Wall clock time and date at job start Tue Mar 31 2020 10:44:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 O 1.21257 * 119.99624 * 2 1 4 4 C 1.47166 * 119.99887 * 179.72328 * 2 1 3 5 5 C 1.39869 * 120.17313 * 359.72083 * 4 2 1 6 6 C 1.37875 * 119.84031 * 179.78085 * 5 4 2 7 7 C 1.38634 * 119.99176 * 0.46646 * 6 5 4 8 8 C 1.37465 * 120.49777 * 359.79906 * 7 6 5 9 9 C 1.38089 * 120.39145 * 359.96189 * 8 7 6 10 10 C 1.51264 * 120.28131 * 179.91216 * 8 7 6 11 11 C 1.53255 * 108.67642 * 70.84556 * 10 8 7 12 12 N 1.45958 * 109.74213 * 279.16343 * 11 10 8 13 13 C 1.34774 * 118.42586 * 245.02089 * 12 11 10 14 14 O 1.21279 * 120.00062 * 359.97438 * 13 12 11 15 15 C 1.50700 * 120.00050 * 179.97438 * 13 12 11 16 16 C 1.52995 * 109.47375 * 179.97438 * 15 13 12 17 17 C 1.50701 * 109.47406 * 180.02562 * 16 15 13 18 18 H 1.08000 * 119.99995 * 359.97438 * 17 16 15 19 19 C 1.37875 * 119.99999 * 180.02562 * 17 16 15 20 20 N 1.31515 * 120.00077 * 359.97438 * 19 17 16 21 21 Si 1.86805 * 120.00096 * 179.97438 * 19 17 16 22 22 H 1.48505 * 109.46659 * 89.99951 * 21 19 17 23 23 H 1.48498 * 109.47345 * 210.00125 * 21 19 17 24 24 H 1.48500 * 109.46864 * 330.00463 * 21 19 17 25 25 C 1.45959 * 123.15259 * 64.99397 * 12 11 10 26 26 C 1.51272 * 119.30260 * 179.79713 * 7 6 5 27 27 H 1.09002 * 109.47260 * 240.27775 * 1 2 3 28 28 H 1.09008 * 109.47154 * 0.27766 * 1 2 3 29 29 H 1.09005 * 109.47238 * 120.27736 * 1 2 3 30 30 H 1.07997 * 120.08037 * 0.02562 * 5 4 2 31 31 H 1.08000 * 120.00408 * 180.21751 * 6 5 4 32 32 H 1.08002 * 120.19197 * 180.02562 * 9 8 7 33 33 H 1.08999 * 109.60474 * 190.60587 * 10 8 7 34 34 H 1.09009 * 109.60285 * 311.08938 * 10 8 7 35 35 H 1.08996 * 109.42972 * 39.25115 * 11 10 8 36 36 H 1.09001 * 109.42346 * 159.08106 * 11 10 8 37 37 H 1.09006 * 109.47440 * 300.00436 * 15 13 12 38 38 H 1.09005 * 109.46905 * 60.00183 * 15 13 12 39 39 H 1.09001 * 109.47075 * 300.00286 * 16 15 13 40 40 H 1.08997 * 109.47012 * 60.00022 * 16 15 13 41 41 H 0.97008 * 120.00009 * 179.97438 * 20 19 17 42 42 H 1.09006 * 109.42425 * 55.05185 * 25 12 11 43 43 H 1.09004 * 109.42688 * 174.93323 * 25 12 11 44 44 H 1.08997 * 109.58726 * 349.51634 * 26 7 6 45 45 H 1.09000 * 109.74128 * 229.11225 * 26 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1132 1.0502 0.0000 4 6 2.2428 -1.2745 0.0062 5 6 1.5471 -2.4878 0.0179 6 6 2.2434 -3.6779 0.0190 7 6 3.6297 -3.6697 0.0183 8 6 4.3203 -2.4811 0.0123 9 6 3.6414 -1.2787 0.0061 10 6 5.8329 -2.4779 0.0136 11 6 6.3259 -2.9608 -1.3548 12 7 6.2796 -4.4186 -1.4092 13 6 7.4407 -5.0935 -1.5231 14 8 8.4906 -4.4890 -1.5784 15 6 7.4343 -6.5994 -1.5818 16 6 8.8704 -7.1109 -1.7107 17 6 8.8640 -8.6167 -1.7700 18 1 7.9291 -9.1551 -1.7203 19 6 10.0517 -9.3071 -1.8866 20 7 11.1902 -8.6515 -1.9467 21 14 10.0439 -11.1737 -1.9594 22 1 9.9366 -11.6134 -3.3738 23 1 11.3034 -11.6973 -1.3724 24 1 8.8852 -11.6941 -1.1901 25 6 5.0364 -5.1808 -1.3455 26 6 4.3778 -4.9844 0.0243 27 1 -0.3634 -0.5095 0.8925 28 1 -0.3634 1.0277 -0.0050 29 1 -0.3634 -0.5182 -0.8875 30 1 0.4672 -2.4926 0.0221 31 1 1.7088 -4.6163 0.0246 32 1 4.1872 -0.3468 0.0010 33 1 6.1963 -1.4668 0.1973 34 1 6.1995 -3.1477 0.7916 35 1 5.6877 -2.5484 -2.1363 36 1 7.3510 -2.6245 -1.5102 37 1 6.9871 -6.9967 -0.6705 38 1 6.8536 -6.9269 -2.4442 39 1 9.3172 -6.7136 -2.6221 40 1 9.4515 -6.7833 -0.8486 41 1 12.0260 -9.1373 -2.0284 42 1 4.3589 -4.8350 -2.1263 43 1 5.2518 -6.2388 -1.4949 44 1 3.6810 -5.8005 0.2154 45 1 5.1440 -4.9686 0.7994 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000331458496.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:44:02 Heat of formation + Delta-G solvation = -82.678686 kcal Electronic energy + Delta-G solvation = -25568.830694 eV Core-core repulsion = 21935.637235 eV Total energy + Delta-G solvation = -3633.193458 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 315.162 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -41.70702 -40.79906 -39.63606 -37.23588 -35.63515 -34.48322 -33.90172 -32.90972 -31.15631 -30.87106 -28.60638 -27.51028 -25.77637 -24.61471 -23.49985 -22.76470 -22.41215 -20.04142 -19.91131 -18.88623 -17.95431 -17.67766 -16.99603 -16.91713 -16.59118 -16.40647 -16.24205 -16.00981 -15.41881 -15.31145 -14.91281 -14.86899 -14.44201 -14.30367 -14.09437 -13.86475 -13.56680 -13.22803 -13.14226 -13.06974 -13.01542 -12.84976 -12.79191 -12.57335 -12.46546 -12.32502 -12.02942 -11.91267 -11.79751 -11.46646 -11.28080 -10.76429 -10.66239 -10.55590 -10.00438 -9.82464 -9.42205 -8.16356 -6.30458 -0.33383 0.39605 1.41055 1.43624 1.46438 1.57226 1.67266 2.04739 2.44584 2.77287 3.09676 3.16824 3.50607 3.74375 3.81102 3.91905 4.07851 4.14164 4.15233 4.24606 4.26857 4.34866 4.37302 4.46122 4.47972 4.54263 4.57280 4.69353 4.72220 4.81067 4.82358 4.89708 4.94991 5.07573 5.13893 5.18441 5.20332 5.33900 5.47056 5.49965 5.57889 5.63806 5.73155 5.86795 5.95078 6.18655 6.36121 6.53874 6.88366 7.25970 7.39984 8.96339 Molecular weight = 315.16amu Principal moments of inertia in cm(-1) A = 0.033243 B = 0.002401 C = 0.002272 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 842.087252 B =11660.844325 C =12323.116724 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C 0.392 3.608 3 O -0.512 6.512 4 C -0.194 4.194 5 C -0.062 4.062 6 C -0.123 4.123 7 C -0.051 4.051 8 C -0.103 4.103 9 C -0.074 4.074 10 C -0.089 4.089 11 C 0.116 3.884 12 N -0.608 5.608 13 C 0.504 3.496 14 O -0.590 6.590 15 C -0.116 4.116 16 C 0.042 3.958 17 C -0.540 4.540 18 H 0.080 0.920 19 C -0.010 4.010 20 N -0.939 5.939 21 Si 0.974 3.026 22 H -0.272 1.272 23 H -0.289 1.289 24 H -0.252 1.252 25 C 0.105 3.895 26 C -0.100 4.100 27 H 0.119 0.881 28 H 0.080 0.920 29 H 0.119 0.881 30 H 0.170 0.830 31 H 0.165 0.835 32 H 0.116 0.884 33 H 0.086 0.914 34 H 0.072 0.928 35 H 0.078 0.922 36 H 0.073 0.927 37 H 0.107 0.893 38 H 0.106 0.894 39 H -0.021 1.021 40 H -0.020 1.020 41 H 0.262 0.738 42 H 0.087 0.913 43 H 0.110 0.890 44 H 0.122 0.878 45 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -29.443 10.521 5.036 31.669 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.250 4.250 2 C 0.274 3.726 3 O -0.391 6.391 4 C -0.194 4.194 5 C -0.079 4.079 6 C -0.140 4.140 7 C -0.051 4.051 8 C -0.103 4.103 9 C -0.092 4.092 10 C -0.127 4.127 11 C -0.007 4.007 12 N -0.341 5.341 13 C 0.295 3.705 14 O -0.469 6.469 15 C -0.155 4.155 16 C 0.004 3.996 17 C -0.577 4.577 18 H 0.098 0.902 19 C -0.207 4.207 20 N -0.579 5.579 21 Si 0.798 3.202 22 H -0.198 1.198 23 H -0.215 1.215 24 H -0.176 1.176 25 C -0.017 4.017 26 C -0.138 4.138 27 H 0.138 0.862 28 H 0.099 0.901 29 H 0.137 0.863 30 H 0.187 0.813 31 H 0.182 0.818 32 H 0.134 0.866 33 H 0.105 0.895 34 H 0.090 0.910 35 H 0.096 0.904 36 H 0.091 0.909 37 H 0.125 0.875 38 H 0.124 0.876 39 H -0.002 1.002 40 H -0.002 1.002 41 H 0.070 0.930 42 H 0.106 0.894 43 H 0.128 0.872 44 H 0.140 0.860 45 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -28.457 11.386 4.988 31.054 hybrid contribution 1.229 -0.270 -0.076 1.261 sum -27.228 11.115 4.912 29.817 Atomic orbital electron populations 1.22290 0.90129 1.05794 1.06804 1.23224 0.93658 0.86812 0.68865 1.90536 1.73543 1.35903 1.39151 1.20683 0.94000 0.95976 1.08782 1.21792 1.01765 0.90086 0.94289 1.21513 0.92440 0.99851 1.00199 1.20163 0.94774 0.94376 0.95754 1.19629 0.95322 0.93057 1.02312 1.21400 0.94134 0.97525 0.96133 1.21087 0.91613 1.02692 0.97314 1.21334 1.02259 0.79887 0.97171 1.47882 1.06831 1.06503 1.72886 1.21605 0.83194 0.91627 0.74122 1.90637 1.33354 1.71388 1.51567 1.21668 1.00273 0.88924 1.04675 1.18701 0.91420 0.95008 0.94470 1.21715 0.93666 0.92250 1.50103 0.90238 1.26170 0.95169 1.04570 0.94775 1.70192 0.98518 1.37943 1.51279 0.85313 0.77920 0.78310 0.78644 1.19777 1.21465 1.17578 1.21881 0.84187 0.97838 0.97749 1.21339 1.00077 0.95074 0.97315 0.86244 0.90119 0.86297 0.81258 0.81793 0.86550 0.89517 0.90980 0.90394 0.90877 0.87471 0.87588 1.00249 1.00167 0.92959 0.89450 0.87214 0.85992 0.91068 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.22 8.93 71.24 0.64 -0.59 16 2 C 0.39 6.48 7.23 28.03 0.20 6.68 16 3 O -0.51 -13.21 17.08 -2.96 -0.05 -13.26 16 4 C -0.19 -3.10 5.87 -20.15 -0.12 -3.21 16 5 C -0.06 -0.58 9.47 22.58 0.21 -0.36 16 6 C -0.12 -1.22 9.65 22.28 0.21 -1.00 16 7 C -0.05 -0.78 5.06 -19.77 -0.10 -0.88 16 8 C -0.10 -2.02 5.04 -19.90 -0.10 -2.12 16 9 C -0.07 -1.49 9.21 22.63 0.21 -1.29 16 10 C -0.09 -2.01 5.48 30.11 0.16 -1.85 16 11 C 0.12 3.08 6.06 86.57 0.52 3.61 16 12 N -0.61 -16.99 2.75 -823.54 -2.26 -19.26 16 13 C 0.50 19.62 7.62 87.66 0.67 20.29 16 14 O -0.59 -29.35 15.15 -3.03 -0.05 -29.39 16 15 C -0.12 -4.53 3.90 29.85 0.12 -4.41 16 16 C 0.04 2.31 4.26 29.85 0.13 2.43 16 17 C -0.54 -30.19 9.11 25.60 0.23 -29.96 16 18 H 0.08 3.98 7.74 -2.91 -0.02 3.95 16 19 C -0.01 -0.56 5.46 84.65 0.46 -0.10 16 20 N -0.94 -59.66 13.29 21.45 0.28 -59.38 16 21 Si 0.97 43.73 29.54 68.60 2.03 45.76 16 22 H -0.27 -11.78 7.11 99.48 0.71 -11.08 16 23 H -0.29 -12.95 7.11 99.48 0.71 -12.25 16 24 H -0.25 -10.36 7.11 99.48 0.71 -9.65 16 25 C 0.11 1.94 5.95 86.57 0.52 2.46 16 26 C -0.10 -1.47 5.47 30.11 0.16 -1.31 16 27 H 0.12 0.18 8.08 -2.39 -0.02 0.16 16 28 H 0.08 0.61 8.12 -2.38 -0.02 0.59 16 29 H 0.12 0.20 8.10 -2.38 -0.02 0.18 16 30 H 0.17 0.24 7.05 -2.91 -0.02 0.22 16 31 H 0.16 0.59 7.95 -2.91 -0.02 0.57 16 32 H 0.12 2.63 7.55 -2.91 -0.02 2.61 16 33 H 0.09 1.84 7.89 -2.39 -0.02 1.82 16 34 H 0.07 1.78 7.21 -2.38 -0.02 1.76 16 35 H 0.08 1.84 7.94 -2.39 -0.02 1.82 16 36 H 0.07 2.36 6.75 -2.39 -0.02 2.34 16 37 H 0.11 3.59 7.81 -2.38 -0.02 3.57 16 38 H 0.11 3.58 7.61 -2.38 -0.02 3.56 16 39 H -0.02 -1.33 8.10 -2.39 -0.02 -1.34 16 40 H -0.02 -1.27 8.10 -2.39 -0.02 -1.29 16 41 H 0.26 15.59 8.31 -92.70 -0.77 14.82 16 42 H 0.09 1.35 7.94 -2.38 -0.02 1.33 16 43 H 0.11 1.89 5.52 -2.39 -0.01 1.88 16 44 H 0.12 1.01 7.89 -2.39 -0.02 0.99 16 45 H 0.07 1.32 7.22 -2.39 -0.02 1.31 16 Total: -1.00 -84.33 365.81 5.07 -79.25 By element: Atomic # 1 Polarization: 6.89 SS G_CDS: 0.99 Total: 7.88 kcal Atomic # 6 Polarization: -15.73 SS G_CDS: 4.13 Total: -11.60 kcal Atomic # 7 Polarization: -76.65 SS G_CDS: -1.98 Total: -78.63 kcal Atomic # 8 Polarization: -42.56 SS G_CDS: -0.10 Total: -42.66 kcal Atomic # 14 Polarization: 43.73 SS G_CDS: 2.03 Total: 45.76 kcal Total: -84.33 5.07 -79.25 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000331458496.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.427 kcal (2) G-P(sol) polarization free energy of solvation -84.326 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.753 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.074 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.252 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.679 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds