Wall clock time and date at job start Tue Mar 31 2020 12:07:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86800 * 119.99641 * 2 1 4 4 H 1.48507 * 109.46900 * 275.10466 * 3 2 1 5 5 H 1.48500 * 109.47535 * 35.10617 * 3 2 1 6 6 H 1.48496 * 109.47227 * 155.11086 * 3 2 1 7 7 C 1.38803 * 120.00246 * 180.02562 * 2 1 3 8 8 H 1.08005 * 119.99760 * 336.55020 * 7 2 1 9 9 N 1.36937 * 120.00217 * 156.55285 * 7 2 1 10 10 C 1.46494 * 120.00194 * 127.01272 * 9 7 2 11 11 C 1.54273 * 110.03008 * 308.00740 * 10 9 7 12 12 C 1.54962 * 104.15738 * 95.75778 * 11 10 9 13 13 C 1.54886 * 102.77653 * 37.88898 * 12 11 10 14 14 C 1.53871 * 110.03712 * 65.22733 * 10 9 7 15 15 S 1.65601 * 119.99652 * 307.00538 * 9 7 2 16 16 O 1.42099 * 104.27863 * 19.88892 * 15 9 7 17 17 O 1.42099 * 104.27507 * 147.74541 * 15 9 7 18 18 C 1.81404 * 104.45252 * 263.81657 * 15 9 7 19 19 C 1.53000 * 109.47052 * 180.02562 * 18 15 9 20 20 C 1.53006 * 109.46844 * 179.97438 * 19 18 15 21 21 C 1.54269 * 110.03343 * 292.90968 * 20 19 18 22 22 C 1.54958 * 104.15740 * 217.13772 * 21 20 19 23 23 C 1.54893 * 102.77953 * 37.88602 * 22 21 20 24 24 C 1.53871 * 110.03154 * 175.68761 * 20 19 18 25 25 H 0.97000 * 120.00233 * 359.97438 * 1 2 3 26 26 H 1.09001 * 110.01318 * 186.62505 * 10 9 7 27 27 H 1.08992 * 110.48601 * 214.40638 * 11 10 9 28 28 H 1.09003 * 110.48554 * 337.05166 * 11 10 9 29 29 H 1.09007 * 110.71921 * 279.57585 * 12 11 10 30 30 H 1.08996 * 110.92249 * 156.30158 * 12 11 10 31 31 H 1.09010 * 110.48543 * 203.40188 * 13 12 11 32 32 H 1.08997 * 110.60323 * 80.81885 * 13 12 11 33 33 H 1.09003 * 110.03142 * 359.95449 * 14 10 9 34 34 H 1.09000 * 110.03302 * 121.38616 * 14 10 9 35 35 H 1.09002 * 109.46704 * 299.99931 * 18 15 9 36 36 H 1.08996 * 109.46971 * 60.00178 * 18 15 9 37 37 H 1.08996 * 109.47446 * 299.99794 * 19 18 15 38 38 H 1.08996 * 109.47230 * 60.00161 * 19 18 15 39 39 H 1.09000 * 110.01438 * 54.30265 * 20 19 18 40 40 H 1.08999 * 110.48735 * 335.78269 * 21 20 19 41 41 H 1.09000 * 110.48653 * 98.42597 * 21 20 19 42 42 H 1.09003 * 110.72165 * 279.57637 * 22 21 20 43 43 H 1.08994 * 110.92511 * 156.30013 * 22 21 20 44 44 H 1.09002 * 110.48656 * 203.40943 * 23 22 21 45 45 H 1.08999 * 110.59473 * 80.82133 * 23 22 21 46 46 H 1.08993 * 110.03430 * 238.57276 * 24 20 19 47 47 H 1.08998 * 110.03177 * 359.95732 * 24 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.3897 2.1087 -1.3946 5 1 1.5057 2.6192 0.8052 6 1 3.5975 1.4116 0.5892 7 6 2.0103 -1.2020 -0.0005 8 1 1.5372 -2.0989 0.3713 9 7 3.2949 -1.2508 -0.4724 10 6 4.3584 -1.8237 0.3562 11 6 4.3537 -1.1656 1.7515 12 6 3.5223 -2.1377 2.6263 13 6 3.9542 -3.5282 2.0983 14 6 4.1042 -3.3252 0.5764 15 16 3.6460 -0.6622 -1.9799 16 8 2.5599 0.2037 -2.2798 17 8 4.9706 -0.1618 -1.8610 18 6 3.6114 -2.1226 -3.0555 19 6 3.9253 -1.7044 -4.4934 20 6 3.8967 -2.9363 -5.4005 21 6 5.0612 -3.8829 -5.0430 22 6 5.5252 -4.4461 -6.4100 23 6 5.3882 -3.2220 -7.3492 24 6 4.1041 -2.5165 -6.8662 25 1 -0.4850 0.8400 0.0004 26 1 5.3259 -1.6752 -0.1233 27 1 5.3698 -1.0803 2.1365 28 1 3.8770 -0.1862 1.7097 29 1 2.4550 -1.9797 2.4706 30 1 3.7778 -2.0282 3.6802 31 1 3.1860 -4.2721 2.3101 32 1 4.9052 -3.8273 2.5388 33 1 3.1889 -3.6275 0.0673 34 1 4.9483 -3.9055 0.2038 35 1 4.3568 -2.8417 -2.7157 36 1 2.6223 -2.5787 -3.0171 37 1 3.1803 -0.9851 -4.8335 38 1 4.9146 -1.2485 -4.5315 39 1 2.9454 -3.4573 -5.2924 40 1 5.8693 -3.3298 -4.5643 41 1 4.7134 -4.6882 -4.3959 42 1 4.8730 -5.2568 -6.7346 43 1 6.5611 -4.7817 -6.3614 44 1 5.2793 -3.5456 -8.3843 45 1 6.2487 -2.5610 -7.2456 46 1 3.2539 -2.8345 -7.4696 47 1 4.2243 -1.4352 -6.9315 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000333650608.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:07:58 Heat of formation + Delta-G solvation = -92.421813 kcal Electronic energy + Delta-G solvation = -26408.873037 eV Core-core repulsion = 22910.701036 eV Total energy + Delta-G solvation = -3498.172001 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 315.166 amu Computer time = 1.26 seconds Orbital eigenvalues (eV) -38.44883 -38.06645 -35.83251 -34.67845 -33.81185 -32.97349 -31.75541 -28.76224 -28.07629 -27.53089 -27.20364 -23.97153 -22.67851 -20.67479 -20.13420 -19.57684 -19.37034 -18.85487 -17.26261 -16.06917 -15.91493 -15.40630 -15.17673 -15.07275 -14.55160 -14.46803 -14.12696 -13.86032 -13.35853 -13.20939 -12.85091 -12.64612 -12.33138 -12.25351 -11.70345 -11.55563 -11.27329 -11.18514 -11.15209 -11.04226 -11.02437 -10.90941 -10.74507 -10.68006 -10.56049 -10.53558 -10.50836 -10.25533 -10.15461 -10.00634 -9.98992 -9.79568 -9.75412 -9.13467 -8.66216 -7.78985 -6.54880 -4.19329 1.53517 3.35192 3.46300 3.60916 3.98981 4.41647 4.56837 4.63557 4.73138 4.91581 4.99199 5.17961 5.23689 5.29381 5.36015 5.38842 5.42732 5.49747 5.54664 5.63064 5.66790 5.75027 5.79992 5.89169 5.96407 6.00056 6.04323 6.07558 6.13644 6.20040 6.21217 6.23719 6.28786 6.32814 6.36762 6.43730 6.46061 6.49897 6.53909 6.58226 6.77015 6.96723 7.08305 7.28869 7.75444 8.18990 8.98313 9.13287 10.46258 Molecular weight = 315.17amu Principal moments of inertia in cm(-1) A = 0.015615 B = 0.005177 C = 0.004366 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1792.720933 B = 5406.813285 C = 6410.995051 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.817 5.817 2 C 0.102 3.898 3 Si 0.854 3.146 4 H -0.237 1.237 5 H -0.291 1.291 6 H -0.255 1.255 7 C -0.258 4.258 8 H 0.094 0.906 9 N -0.829 5.829 10 C 0.152 3.848 11 C -0.121 4.121 12 C -0.119 4.119 13 C -0.117 4.117 14 C -0.137 4.137 15 S 2.453 3.547 16 O -0.952 6.952 17 O -1.004 7.004 18 C -0.647 4.647 19 C -0.098 4.098 20 C -0.085 4.085 21 C -0.121 4.121 22 C -0.126 4.126 23 C -0.125 4.125 24 C -0.125 4.125 25 H 0.281 0.719 26 H 0.078 0.922 27 H 0.056 0.944 28 H 0.079 0.921 29 H 0.084 0.916 30 H 0.050 0.950 31 H 0.057 0.943 32 H 0.053 0.947 33 H 0.077 0.923 34 H 0.053 0.947 35 H 0.106 0.894 36 H 0.117 0.883 37 H 0.068 0.932 38 H 0.065 0.935 39 H 0.073 0.927 40 H 0.068 0.932 41 H 0.064 0.936 42 H 0.064 0.936 43 H 0.063 0.937 44 H 0.061 0.939 45 H 0.064 0.936 46 H 0.062 0.938 47 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.661 -8.000 -4.820 12.080 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.451 5.451 2 C -0.116 4.116 3 Si 0.681 3.319 4 H -0.162 1.162 5 H -0.219 1.219 6 H -0.179 1.179 7 C -0.406 4.406 8 H 0.112 0.888 9 N -0.653 5.653 10 C 0.044 3.956 11 C -0.160 4.160 12 C -0.156 4.156 13 C -0.155 4.155 14 C -0.176 4.176 15 S 2.559 3.441 16 O -0.941 6.941 17 O -0.993 6.993 18 C -0.768 4.768 19 C -0.137 4.137 20 C -0.105 4.105 21 C -0.158 4.158 22 C -0.163 4.163 23 C -0.162 4.162 24 C -0.163 4.163 25 H 0.091 0.909 26 H 0.096 0.904 27 H 0.075 0.925 28 H 0.097 0.903 29 H 0.103 0.897 30 H 0.069 0.931 31 H 0.076 0.924 32 H 0.072 0.928 33 H 0.096 0.904 34 H 0.072 0.928 35 H 0.125 0.875 36 H 0.136 0.864 37 H 0.087 0.913 38 H 0.084 0.916 39 H 0.091 0.909 40 H 0.086 0.914 41 H 0.083 0.917 42 H 0.083 0.917 43 H 0.081 0.919 44 H 0.080 0.920 45 H 0.083 0.917 46 H 0.081 0.919 47 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 7.878 -7.049 -5.329 11.838 hybrid contribution 0.097 0.075 -0.316 0.339 sum 7.975 -6.973 -5.645 12.004 Atomic orbital electron populations 1.69810 1.07138 1.29378 1.38821 1.25810 0.95071 0.99557 0.91166 0.87239 0.80909 0.83618 0.80168 1.16197 1.21859 1.17922 1.18689 0.87538 0.95856 1.38512 0.88844 1.53151 1.13352 1.75757 1.23027 1.21399 0.89849 0.91959 0.92410 1.22580 0.98728 1.00387 0.94291 1.22491 1.01940 0.93973 0.97206 1.22250 0.99892 0.97712 0.95639 1.22626 1.01661 0.96734 0.96606 1.13700 0.73909 0.80677 0.75831 1.93464 1.54750 1.62340 1.83574 1.93360 1.40190 1.80281 1.85513 1.30884 1.08871 1.26206 1.10821 1.21355 1.01660 0.97865 0.92821 1.21760 0.99069 0.95839 0.93792 1.22475 0.97955 0.98616 0.96791 1.22513 1.00742 0.97482 0.95582 1.22358 0.98037 0.97139 0.98709 1.22268 0.97651 1.00549 0.95835 0.90861 0.90358 0.92517 0.90284 0.89697 0.93101 0.92440 0.92781 0.90440 0.92825 0.87508 0.86428 0.91328 0.91642 0.90870 0.91374 0.91674 0.91740 0.91851 0.92043 0.91732 0.91915 0.91635 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -22.31 13.97 55.49 0.78 -21.53 16 2 C 0.10 2.71 4.51 -17.43 -0.08 2.63 16 3 Si 0.85 22.06 24.31 -169.99 -4.13 17.93 16 4 H -0.24 -6.54 6.05 56.52 0.34 -6.20 16 5 H -0.29 -7.21 7.11 56.52 0.40 -6.81 16 6 H -0.25 -6.38 5.89 56.52 0.33 -6.04 16 7 C -0.26 -6.31 6.99 -15.06 -0.11 -6.42 16 8 H 0.09 2.32 7.54 -52.48 -0.40 1.93 16 9 N -0.83 -18.61 1.90 -52.34 -0.10 -18.71 16 10 C 0.15 2.92 3.31 -66.81 -0.22 2.70 16 11 C -0.12 -2.23 6.04 -25.03 -0.15 -2.38 16 12 C -0.12 -1.95 6.57 -24.70 -0.16 -2.11 16 13 C -0.12 -1.72 6.83 -25.07 -0.17 -1.89 16 14 C -0.14 -2.22 6.31 -25.62 -0.16 -2.38 16 15 S 2.45 56.85 4.35 -107.50 -0.47 56.38 16 16 O -0.95 -25.37 12.05 -57.54 -0.69 -26.06 16 17 O -1.00 -24.88 16.74 -57.54 -0.96 -25.85 16 18 C -0.65 -11.83 6.02 37.16 0.22 -11.61 16 19 C -0.10 -1.64 4.35 -26.73 -0.12 -1.76 16 20 C -0.09 -1.18 2.93 -89.50 -0.26 -1.44 16 21 C -0.12 -1.51 5.50 -25.03 -0.14 -1.65 16 22 C -0.13 -1.32 6.91 -24.70 -0.17 -1.49 16 23 C -0.12 -1.31 6.83 -25.07 -0.17 -1.48 16 24 C -0.13 -1.50 6.46 -25.62 -0.17 -1.67 16 25 H 0.28 7.28 8.31 -40.82 -0.34 6.94 16 26 H 0.08 1.49 7.00 -51.93 -0.36 1.12 16 27 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 28 H 0.08 1.66 5.46 -51.93 -0.28 1.38 16 29 H 0.08 1.58 7.06 -51.92 -0.37 1.21 16 30 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 31 H 0.06 0.79 8.14 -51.92 -0.42 0.37 16 32 H 0.05 0.70 8.14 -51.93 -0.42 0.27 16 33 H 0.08 1.33 7.32 -51.93 -0.38 0.95 16 34 H 0.05 0.75 8.14 -51.93 -0.42 0.33 16 35 H 0.11 1.75 7.48 -51.92 -0.39 1.37 16 36 H 0.12 2.13 8.14 -51.93 -0.42 1.71 16 37 H 0.07 1.17 8.14 -51.93 -0.42 0.74 16 38 H 0.06 1.08 8.02 -51.93 -0.42 0.66 16 39 H 0.07 1.01 8.14 -51.93 -0.42 0.59 16 40 H 0.07 0.89 7.77 -51.93 -0.40 0.48 16 41 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 42 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 43 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 44 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 45 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 46 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 47 H 0.06 0.79 7.67 -51.93 -0.40 0.39 16 LS Contribution 359.55 15.07 5.42 5.42 Total: -1.00 -29.18 359.55 -10.59 -39.77 By element: Atomic # 1 Polarization: 12.17 SS G_CDS: -8.58 Total: 3.59 kcal Atomic # 6 Polarization: -29.09 SS G_CDS: -1.85 Total: -30.94 kcal Atomic # 7 Polarization: -40.92 SS G_CDS: 0.68 Total: -40.24 kcal Atomic # 8 Polarization: -50.25 SS G_CDS: -1.66 Total: -51.91 kcal Atomic # 14 Polarization: 22.06 SS G_CDS: -4.13 Total: 17.93 kcal Atomic # 16 Polarization: 56.85 SS G_CDS: -0.47 Total: 56.38 kcal Total LS contribution 5.42 Total: 5.42 kcal Total: -29.18 -10.59 -39.77 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000333650608.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -52.653 kcal (2) G-P(sol) polarization free energy of solvation -29.176 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.830 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.592 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.768 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.422 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.26 seconds