Wall clock time and date at job start Tue Mar 31 2020 12:07:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86800 * 119.99641 * 2 1 4 4 H 1.48507 * 109.46900 * 275.10466 * 3 2 1 5 5 H 1.48500 * 109.47535 * 35.10617 * 3 2 1 6 6 H 1.48496 * 109.47227 * 155.11086 * 3 2 1 7 7 C 1.38803 * 120.00246 * 180.02562 * 2 1 3 8 8 H 1.08005 * 119.99760 * 336.55020 * 7 2 1 9 9 N 1.36937 * 120.00217 * 156.55285 * 7 2 1 10 10 C 1.46494 * 120.00194 * 127.01272 * 9 7 2 11 11 C 1.54273 * 110.03008 * 308.00740 * 10 9 7 12 12 C 1.54962 * 104.15738 * 95.75778 * 11 10 9 13 13 C 1.54886 * 102.77653 * 37.88898 * 12 11 10 14 14 C 1.53871 * 110.03712 * 65.22733 * 10 9 7 15 15 S 1.65601 * 119.99652 * 307.00538 * 9 7 2 16 16 O 1.42099 * 104.27863 * 19.88892 * 15 9 7 17 17 O 1.42099 * 104.27507 * 147.74541 * 15 9 7 18 18 C 1.81404 * 104.45252 * 263.81657 * 15 9 7 19 19 C 1.53000 * 109.47052 * 180.02562 * 18 15 9 20 20 C 1.53006 * 109.46844 * 179.97438 * 19 18 15 21 21 C 1.54269 * 110.03343 * 292.90968 * 20 19 18 22 22 C 1.54958 * 104.15740 * 217.13772 * 21 20 19 23 23 C 1.54893 * 102.77953 * 37.88602 * 22 21 20 24 24 C 1.53871 * 110.03154 * 175.68761 * 20 19 18 25 25 H 0.97000 * 120.00233 * 359.97438 * 1 2 3 26 26 H 1.09001 * 110.01318 * 186.62505 * 10 9 7 27 27 H 1.08992 * 110.48601 * 214.40638 * 11 10 9 28 28 H 1.09003 * 110.48554 * 337.05166 * 11 10 9 29 29 H 1.09007 * 110.71921 * 279.57585 * 12 11 10 30 30 H 1.08996 * 110.92249 * 156.30158 * 12 11 10 31 31 H 1.09010 * 110.48543 * 203.40188 * 13 12 11 32 32 H 1.08997 * 110.60323 * 80.81885 * 13 12 11 33 33 H 1.09003 * 110.03142 * 359.95449 * 14 10 9 34 34 H 1.09000 * 110.03302 * 121.38616 * 14 10 9 35 35 H 1.09002 * 109.46704 * 299.99931 * 18 15 9 36 36 H 1.08996 * 109.46971 * 60.00178 * 18 15 9 37 37 H 1.08996 * 109.47446 * 299.99794 * 19 18 15 38 38 H 1.08996 * 109.47230 * 60.00161 * 19 18 15 39 39 H 1.09000 * 110.01438 * 54.30265 * 20 19 18 40 40 H 1.08999 * 110.48735 * 335.78269 * 21 20 19 41 41 H 1.09000 * 110.48653 * 98.42597 * 21 20 19 42 42 H 1.09003 * 110.72165 * 279.57637 * 22 21 20 43 43 H 1.08994 * 110.92511 * 156.30013 * 22 21 20 44 44 H 1.09002 * 110.48656 * 203.40943 * 23 22 21 45 45 H 1.08999 * 110.59473 * 80.82133 * 23 22 21 46 46 H 1.08993 * 110.03430 * 238.57276 * 24 20 19 47 47 H 1.08998 * 110.03177 * 359.95732 * 24 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.3897 2.1087 -1.3946 5 1 1.5057 2.6192 0.8052 6 1 3.5975 1.4116 0.5892 7 6 2.0103 -1.2020 -0.0005 8 1 1.5372 -2.0989 0.3713 9 7 3.2949 -1.2508 -0.4724 10 6 4.3584 -1.8237 0.3562 11 6 4.3537 -1.1656 1.7515 12 6 3.5223 -2.1377 2.6263 13 6 3.9542 -3.5282 2.0983 14 6 4.1042 -3.3252 0.5764 15 16 3.6460 -0.6622 -1.9799 16 8 2.5599 0.2037 -2.2798 17 8 4.9706 -0.1618 -1.8610 18 6 3.6114 -2.1226 -3.0555 19 6 3.9253 -1.7044 -4.4934 20 6 3.8967 -2.9363 -5.4005 21 6 5.0612 -3.8829 -5.0430 22 6 5.5252 -4.4461 -6.4100 23 6 5.3882 -3.2220 -7.3492 24 6 4.1041 -2.5165 -6.8662 25 1 -0.4850 0.8400 0.0004 26 1 5.3259 -1.6752 -0.1233 27 1 5.3698 -1.0803 2.1365 28 1 3.8770 -0.1862 1.7097 29 1 2.4550 -1.9797 2.4706 30 1 3.7778 -2.0282 3.6802 31 1 3.1860 -4.2721 2.3101 32 1 4.9052 -3.8273 2.5388 33 1 3.1889 -3.6275 0.0673 34 1 4.9483 -3.9055 0.2038 35 1 4.3568 -2.8417 -2.7157 36 1 2.6223 -2.5787 -3.0171 37 1 3.1803 -0.9851 -4.8335 38 1 4.9146 -1.2485 -4.5315 39 1 2.9454 -3.4573 -5.2924 40 1 5.8693 -3.3298 -4.5643 41 1 4.7134 -4.6882 -4.3959 42 1 4.8730 -5.2568 -6.7346 43 1 6.5611 -4.7817 -6.3614 44 1 5.2793 -3.5456 -8.3843 45 1 6.2487 -2.5610 -7.2456 46 1 3.2539 -2.8345 -7.4696 47 1 4.2243 -1.4352 -6.9315 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000333650608.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:07:56 Heat of formation + Delta-G solvation = -109.234075 kcal Electronic energy + Delta-G solvation = -26409.602071 eV Core-core repulsion = 22910.701036 eV Total energy + Delta-G solvation = -3498.901035 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 315.166 amu Computer time = 1.73 seconds Orbital eigenvalues (eV) -39.55335 -39.44442 -37.87464 -36.70002 -35.54536 -34.25813 -33.58366 -29.67829 -29.40270 -28.76357 -28.68396 -25.76163 -24.03542 -21.54265 -21.51987 -20.95472 -20.73182 -20.51395 -19.15553 -17.77176 -17.41237 -16.94774 -16.77146 -16.42719 -15.94257 -15.85697 -15.77315 -15.32407 -15.06618 -14.28116 -14.23587 -14.06455 -13.91180 -13.68985 -13.42389 -13.39453 -12.94788 -12.82670 -12.72120 -12.63783 -12.33131 -12.14572 -11.98349 -11.88715 -11.79596 -11.76268 -11.66057 -11.62216 -11.54243 -11.48708 -11.48008 -11.30413 -11.12532 -10.92283 -10.64850 -9.58746 -8.54458 -6.16368 -0.33324 1.24931 1.35605 1.49424 2.12989 2.38920 2.94042 3.15250 3.49370 3.59136 3.69695 3.75587 3.88185 3.98689 3.99783 4.07801 4.23084 4.37136 4.52467 4.57988 4.59445 4.64157 4.71135 4.73185 4.78286 4.83394 4.84936 4.91697 4.93445 4.98726 5.03088 5.06335 5.08484 5.11458 5.18641 5.25063 5.29995 5.35573 5.40303 5.46354 5.50562 5.54720 5.62988 5.79088 6.02907 6.23794 7.05252 7.25873 8.52178 Molecular weight = 315.17amu Principal moments of inertia in cm(-1) A = 0.015615 B = 0.005177 C = 0.004366 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1792.720933 B = 5406.813285 C = 6410.995051 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.862 5.862 2 C 0.076 3.924 3 Si 0.861 3.139 4 H -0.267 1.267 5 H -0.283 1.283 6 H -0.249 1.249 7 C -0.256 4.256 8 H 0.088 0.912 9 N -0.844 5.844 10 C 0.135 3.865 11 C -0.128 4.128 12 C -0.116 4.116 13 C -0.109 4.109 14 C -0.132 4.132 15 S 2.474 3.526 16 O -0.989 6.989 17 O -1.019 7.019 18 C -0.615 4.615 19 C -0.107 4.107 20 C -0.084 4.084 21 C -0.126 4.126 22 C -0.121 4.121 23 C -0.124 4.124 24 C -0.129 4.129 25 H 0.278 0.722 26 H 0.082 0.918 27 H 0.081 0.919 28 H 0.044 0.956 29 H 0.054 0.946 30 H 0.073 0.927 31 H 0.066 0.934 32 H 0.081 0.919 33 H 0.065 0.935 34 H 0.083 0.917 35 H 0.138 0.862 36 H 0.128 0.872 37 H 0.060 0.940 38 H 0.068 0.932 39 H 0.075 0.925 40 H 0.062 0.938 41 H 0.071 0.929 42 H 0.073 0.927 43 H 0.075 0.925 44 H 0.077 0.923 45 H 0.063 0.937 46 H 0.072 0.928 47 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.077 -11.004 -5.922 16.053 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.500 5.500 2 C -0.136 4.136 3 Si 0.688 3.312 4 H -0.194 1.194 5 H -0.210 1.210 6 H -0.173 1.173 7 C -0.399 4.399 8 H 0.105 0.895 9 N -0.670 5.670 10 C 0.028 3.972 11 C -0.168 4.168 12 C -0.154 4.154 13 C -0.147 4.147 14 C -0.171 4.171 15 S 2.582 3.418 16 O -0.978 6.978 17 O -1.009 7.009 18 C -0.744 4.744 19 C -0.146 4.146 20 C -0.104 4.104 21 C -0.163 4.163 22 C -0.159 4.159 23 C -0.162 4.162 24 C -0.166 4.166 25 H 0.088 0.912 26 H 0.100 0.900 27 H 0.100 0.900 28 H 0.063 0.937 29 H 0.073 0.927 30 H 0.091 0.909 31 H 0.085 0.915 32 H 0.100 0.900 33 H 0.083 0.917 34 H 0.102 0.898 35 H 0.156 0.844 36 H 0.146 0.854 37 H 0.079 0.921 38 H 0.086 0.914 39 H 0.093 0.907 40 H 0.080 0.920 41 H 0.090 0.910 42 H 0.092 0.908 43 H 0.094 0.906 44 H 0.096 0.904 45 H 0.082 0.918 46 H 0.091 0.909 47 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 10.243 -10.002 -6.290 15.637 hybrid contribution -0.373 0.924 -0.196 1.016 sum 9.870 -9.078 -6.487 14.896 Atomic orbital electron populations 1.69830 1.07437 1.29072 1.43635 1.26042 0.95200 1.00157 0.92196 0.87108 0.81377 0.84272 0.78404 1.19399 1.21045 1.17302 1.18386 0.87611 0.94736 1.39169 0.89472 1.53023 1.13421 1.76664 1.23913 1.21780 0.88940 0.94160 0.92279 1.22649 1.00176 0.99089 0.94844 1.22429 0.99794 0.94869 0.98305 1.22238 1.01569 0.96466 0.94380 1.22585 1.02288 0.94365 0.97890 1.11221 0.72906 0.80961 0.76699 1.93458 1.55704 1.64318 1.84363 1.93367 1.40272 1.80988 1.86279 1.30508 1.10859 1.22490 1.10493 1.21515 1.01599 0.99533 0.91977 1.21767 0.99967 0.94472 0.94193 1.22528 0.97141 0.98459 0.98217 1.22509 1.01700 0.97550 0.94096 1.22377 0.97038 0.97036 0.99701 1.22300 0.99078 1.00459 0.94797 0.91163 0.90035 0.90021 0.93698 0.92705 0.90874 0.91508 0.89994 0.91653 0.89807 0.84412 0.85382 0.92133 0.91351 0.90694 0.91954 0.91009 0.90788 0.90604 0.90411 0.91806 0.90878 0.92258 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 33. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -49.46 13.97 21.65 0.30 -49.16 16 2 C 0.08 4.23 4.51 84.86 0.38 4.61 16 3 Si 0.86 46.29 24.31 68.60 1.67 47.96 16 4 H -0.27 -15.54 6.05 99.48 0.60 -14.93 16 5 H -0.28 -14.56 7.11 99.48 0.71 -13.85 16 6 H -0.25 -12.88 5.89 99.48 0.59 -12.30 16 7 C -0.26 -12.85 6.99 84.03 0.59 -12.26 16 8 H 0.09 4.46 7.54 -2.91 -0.02 4.44 16 9 N -0.84 -37.69 1.90 -319.52 -0.61 -38.29 16 10 C 0.13 4.99 3.31 45.72 0.15 5.14 16 11 C -0.13 -4.63 6.04 31.70 0.19 -4.44 16 12 C -0.12 -3.68 6.57 31.91 0.21 -3.47 16 13 C -0.11 -2.84 6.83 31.67 0.22 -2.62 16 14 C -0.13 -3.88 6.31 31.32 0.20 -3.68 16 15 S 2.47 113.34 4.35 -56.49 -0.25 113.10 16 16 O -0.99 -53.75 12.05 -127.65 -1.54 -55.29 16 17 O -1.02 -49.61 16.74 -127.65 -2.14 -51.75 16 18 C -0.62 -20.91 6.02 71.98 0.43 -20.48 16 19 C -0.11 -3.34 4.35 30.60 0.13 -3.21 16 20 C -0.08 -2.07 2.93 -10.07 -0.03 -2.10 16 21 C -0.13 -2.67 5.50 31.69 0.17 -2.50 16 22 C -0.12 -2.05 6.91 31.91 0.22 -1.83 16 23 C -0.12 -2.17 6.83 31.67 0.22 -1.95 16 24 C -0.13 -2.72 6.46 31.32 0.20 -2.51 16 25 H 0.28 15.31 8.31 -92.71 -0.77 14.53 16 26 H 0.08 2.91 7.00 -2.39 -0.02 2.90 16 27 H 0.08 2.48 8.14 -2.39 -0.02 2.46 16 28 H 0.04 1.92 5.46 -2.39 -0.01 1.90 16 29 H 0.05 2.06 7.06 -2.38 -0.02 2.04 16 30 H 0.07 1.95 8.14 -2.39 -0.02 1.93 16 31 H 0.07 1.64 8.14 -2.38 -0.02 1.62 16 32 H 0.08 1.72 8.14 -2.39 -0.02 1.70 16 33 H 0.06 2.09 7.32 -2.39 -0.02 2.07 16 34 H 0.08 1.96 8.14 -2.39 -0.02 1.94 16 35 H 0.14 3.96 7.48 -2.39 -0.02 3.94 16 36 H 0.13 4.29 8.14 -2.39 -0.02 4.28 16 37 H 0.06 1.98 8.14 -2.39 -0.02 1.96 16 38 H 0.07 2.10 8.02 -2.39 -0.02 2.08 16 39 H 0.07 1.82 8.14 -2.39 -0.02 1.80 16 40 H 0.06 1.39 7.77 -2.39 -0.02 1.38 16 41 H 0.07 1.42 8.14 -2.39 -0.02 1.40 16 42 H 0.07 1.13 8.14 -2.39 -0.02 1.11 16 43 H 0.08 1.12 8.14 -2.39 -0.02 1.10 16 44 H 0.08 1.12 8.14 -2.39 -0.02 1.10 16 45 H 0.06 1.12 8.14 -2.39 -0.02 1.11 16 46 H 0.07 1.39 8.14 -2.39 -0.02 1.37 16 47 H 0.06 1.32 7.67 -2.39 -0.02 1.30 16 Total: -1.00 -65.78 359.55 1.42 -64.36 By element: Atomic # 1 Polarization: 19.69 SS G_CDS: 0.69 Total: 20.38 kcal Atomic # 6 Polarization: -54.59 SS G_CDS: 3.29 Total: -51.30 kcal Atomic # 7 Polarization: -87.15 SS G_CDS: -0.30 Total: -87.46 kcal Atomic # 8 Polarization: -103.36 SS G_CDS: -3.68 Total: -107.04 kcal Atomic # 14 Polarization: 46.29 SS G_CDS: 1.67 Total: 47.96 kcal Atomic # 16 Polarization: 113.34 SS G_CDS: -0.25 Total: 113.10 kcal Total: -65.78 1.42 -64.36 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000333650608.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.874 kcal (2) G-P(sol) polarization free energy of solvation -65.782 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -110.656 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.422 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.360 kcal (6) G-S(sol) free energy of system = (1) + (5) -109.234 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.73 seconds