Wall clock time and date at job start Tue Mar 31 2020 12:00:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86806 * 119.99487 * 2 1 4 4 H 1.48496 * 109.47331 * 270.00247 * 3 2 1 5 5 H 1.48500 * 109.47111 * 30.01010 * 3 2 1 6 6 H 1.48504 * 109.46843 * 150.00532 * 3 2 1 7 7 C 1.37875 * 120.00353 * 180.02562 * 2 1 3 8 8 H 1.07989 * 120.00053 * 359.97438 * 7 2 1 9 9 C 1.50701 * 119.99708 * 179.97438 * 7 2 1 10 10 N 1.46500 * 109.46863 * 179.97438 * 9 7 2 11 11 C 1.34780 * 119.99837 * 179.97438 * 10 9 7 12 12 O 1.21579 * 120.00036 * 0.02562 * 11 10 9 13 13 N 1.34779 * 119.99379 * 180.02562 * 11 10 9 14 14 C 1.50217 * 122.09218 * 0.02562 * 13 11 10 15 15 C 1.51396 * 109.25592 * 152.01579 * 14 13 11 16 16 C 1.51936 * 113.03282 * 86.88029 * 15 14 13 17 17 N 1.43613 * 113.69239 * 278.63080 * 16 15 14 18 18 C 1.38981 * 117.36385 * 182.14318 * 17 16 15 19 19 C 1.39309 * 131.10959 * 35.59085 * 18 17 16 20 20 C 1.37896 * 120.32008 * 177.53991 * 19 18 17 21 21 C 1.38316 * 120.29127 * 359.97438 * 20 19 18 22 22 C 1.38312 * 119.84789 * 0.39718 * 21 20 19 23 23 C 1.37706 * 120.16642 * 0.02562 * 22 21 20 24 24 C 1.52015 * 131.70106 * 178.95795 * 23 22 21 25 25 C 1.49288 * 108.11557 * 61.12495 * 17 16 15 26 26 H 1.09003 * 113.04595 * 41.93358 * 25 17 16 27 27 C 1.46910 * 122.08201 * 180.02562 * 13 11 10 28 28 H 0.97001 * 120.00103 * 359.97438 * 1 2 3 29 29 H 1.09004 * 109.47328 * 60.00401 * 9 7 2 30 30 H 1.08998 * 109.47348 * 299.99928 * 9 7 2 31 31 H 0.97001 * 120.00315 * 0.02562 * 10 9 7 32 32 H 1.09002 * 109.50517 * 32.08379 * 14 13 11 33 33 H 1.08996 * 109.50987 * 271.95367 * 14 13 11 34 34 H 1.09002 * 108.75281 * 207.76141 * 15 14 13 35 35 H 1.09003 * 108.75693 * 326.00146 * 15 14 13 36 36 H 1.09003 * 108.62497 * 39.85103 * 16 15 14 37 37 H 1.08990 * 108.62941 * 157.64256 * 16 15 14 38 38 H 1.07997 * 119.84042 * 357.54279 * 19 18 17 39 39 H 1.07998 * 119.85566 * 179.97438 * 20 19 18 40 40 H 1.08003 * 120.07586 * 180.37824 * 21 20 19 41 41 H 1.08002 * 119.91840 * 180.02562 * 22 21 20 42 42 H 1.08998 * 110.95459 * 80.85885 * 24 23 22 43 43 H 1.09003 * 110.97759 * 317.15713 * 24 23 22 44 44 H 1.09003 * 109.69030 * 246.87675 * 27 13 11 45 45 H 1.09003 * 109.69299 * 7.45308 * 27 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6179 0.0000 4 1 2.4965 2.0466 -1.4000 5 1 1.4465 2.6527 0.7003 6 1 3.5467 1.4403 0.7000 7 6 2.0046 -1.1940 -0.0005 8 1 1.4647 -2.1292 -0.0005 9 6 3.5116 -1.1938 -0.0011 10 7 4.0000 -2.5750 -0.0010 11 6 5.3252 -2.8212 -0.0020 12 8 6.1152 -1.8970 -0.0025 13 7 5.7744 -4.0919 -0.0024 14 6 4.8406 -5.2685 -0.0024 15 6 5.5186 -6.4441 -0.6735 16 6 6.3604 -7.2707 0.2839 17 7 7.6625 -6.7181 0.5319 18 6 8.5142 -7.4374 1.3619 19 6 8.6943 -8.8095 1.5218 20 6 9.6533 -9.2894 2.3888 21 6 10.4456 -8.4125 3.1074 22 6 10.2697 -7.0483 2.9618 23 6 9.3081 -6.5623 2.1042 24 6 8.8818 -5.1437 1.7624 25 6 7.4850 -5.3713 1.1511 26 1 6.6961 -5.3479 1.9029 27 6 7.2081 -4.4126 -0.0029 28 1 -0.4850 0.8400 0.0004 29 1 3.8753 -0.6802 0.8889 30 1 3.8746 -0.6798 -0.8911 31 1 3.3698 -3.3124 -0.0010 32 1 3.9323 -5.0123 -0.5478 33 1 4.5872 -5.5321 1.0244 34 1 4.7544 -7.0859 -1.1118 35 1 6.1607 -6.0699 -1.4709 36 1 5.8288 -7.3540 1.2318 37 1 6.4813 -8.2704 -0.1330 38 1 8.0800 -9.5007 0.9640 39 1 9.7862 -10.3546 2.5073 40 1 11.1998 -8.7921 3.7809 41 1 10.8880 -6.3626 3.5220 42 1 9.5586 -4.6983 1.0334 43 1 8.8188 -4.5282 2.6598 44 1 7.4782 -4.8859 -0.9469 45 1 7.7888 -3.4998 0.1302 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000335840507.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:00:13 Heat of formation + Delta-G solvation = 29.217964 kcal Electronic energy + Delta-G solvation = -26243.167577 eV Core-core repulsion = 22647.119073 eV Total energy + Delta-G solvation = -3596.048504 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 315.169 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.49457 -39.48485 -37.82280 -35.35599 -34.42972 -33.85630 -32.35224 -31.47145 -30.25828 -29.14032 -27.82062 -26.15575 -25.36003 -22.74465 -22.18573 -21.56574 -20.98750 -20.76245 -19.23682 -18.15880 -17.34677 -16.55441 -16.40248 -16.10752 -15.72238 -15.44689 -14.76713 -14.57920 -14.34145 -14.24541 -13.87581 -13.53692 -13.51438 -13.24649 -13.00509 -12.72164 -12.53582 -12.35210 -12.29243 -12.09646 -11.88487 -11.63645 -11.54193 -11.26937 -11.08404 -10.98736 -10.87018 -10.74019 -10.22230 -9.95586 -9.55656 -9.44903 -9.04230 -8.77416 -8.55405 -7.98128 -7.91199 -6.20664 -4.22552 1.12945 1.17790 2.94947 3.27065 3.28377 3.35226 3.44087 3.59792 3.77586 4.15625 4.34557 4.41823 4.50512 4.55768 4.58915 4.75656 4.79757 4.86962 4.97287 5.03445 5.12271 5.15095 5.23789 5.25869 5.31360 5.43032 5.52429 5.58489 5.61580 5.65430 5.73998 5.77316 5.89875 5.99172 6.09881 6.22741 6.31607 6.37635 6.52780 6.75649 6.83055 7.11648 7.12279 7.25814 7.39215 7.50727 8.25294 8.65510 8.79331 9.19032 9.40965 10.91256 Molecular weight = 315.17amu Principal moments of inertia in cm(-1) A = 0.029065 B = 0.002724 C = 0.002589 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 963.115206 B =10276.548563 C =10812.572403 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.893 5.893 2 C 0.077 3.923 3 Si 0.877 3.123 4 H -0.273 1.273 5 H -0.284 1.284 6 H -0.260 1.260 7 C -0.542 4.542 8 H 0.078 0.922 9 C 0.238 3.762 10 N -0.721 5.721 11 C 0.704 3.296 12 O -0.601 6.601 13 N -0.646 5.646 14 C 0.109 3.891 15 C -0.133 4.133 16 C 0.057 3.943 17 N -0.478 5.478 18 C 0.112 3.888 19 C -0.147 4.147 20 C -0.094 4.094 21 C -0.150 4.150 22 C -0.079 4.079 23 C -0.139 4.139 24 C -0.074 4.074 25 C 0.059 3.941 26 H 0.086 0.914 27 C 0.140 3.860 28 H 0.267 0.733 29 H 0.023 0.977 30 H 0.019 0.981 31 H 0.391 0.609 32 H 0.083 0.917 33 H 0.063 0.937 34 H 0.088 0.912 35 H 0.086 0.914 36 H 0.041 0.959 37 H 0.076 0.924 38 H 0.118 0.882 39 H 0.123 0.877 40 H 0.122 0.878 41 H 0.121 0.879 42 H 0.093 0.907 43 H 0.084 0.916 44 H 0.081 0.919 45 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.723 -20.049 3.600 27.000 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.531 5.531 2 C -0.126 4.126 3 Si 0.703 3.297 4 H -0.198 1.198 5 H -0.210 1.210 6 H -0.184 1.184 7 C -0.580 4.580 8 H 0.096 0.904 9 C 0.115 3.885 10 N -0.374 5.374 11 C 0.406 3.594 12 O -0.481 6.481 13 N -0.387 5.387 14 C -0.013 4.013 15 C -0.171 4.171 16 C -0.070 4.070 17 N -0.191 5.191 18 C 0.013 3.987 19 C -0.168 4.168 20 C -0.112 4.112 21 C -0.170 4.170 22 C -0.098 4.098 23 C -0.141 4.141 24 C -0.111 4.111 25 C -0.047 4.047 26 H 0.104 0.896 27 C 0.016 3.984 28 H 0.077 0.923 29 H 0.041 0.959 30 H 0.036 0.964 31 H 0.226 0.774 32 H 0.101 0.899 33 H 0.081 0.919 34 H 0.106 0.894 35 H 0.105 0.895 36 H 0.060 0.940 37 H 0.095 0.905 38 H 0.136 0.864 39 H 0.141 0.859 40 H 0.140 0.860 41 H 0.139 0.861 42 H 0.111 0.889 43 H 0.102 0.898 44 H 0.099 0.901 45 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges 18.199 -19.118 3.040 26.570 hybrid contribution -0.412 0.220 0.539 0.713 sum 17.788 -18.898 3.579 26.198 Atomic orbital electron populations 1.69881 1.06207 1.27412 1.49570 1.24781 0.94787 0.99169 0.93884 0.86810 0.80610 0.83169 0.79068 1.19850 1.20952 1.18417 1.21077 0.88550 0.95143 1.53200 0.90385 1.19368 0.94817 0.77675 0.96647 1.45479 1.03693 1.11044 1.77175 1.15906 0.83630 0.81804 0.78101 1.90856 1.55425 1.42410 1.59368 1.48253 1.06275 1.04142 1.80029 1.21905 0.93070 0.85595 1.00750 1.21348 0.99715 0.96740 0.99302 1.21312 0.87625 0.98757 0.99310 1.59260 1.13671 1.04474 1.41720 1.19361 0.95549 0.92853 0.90938 1.20373 1.01803 0.92414 1.02195 1.20838 0.95015 0.99553 0.95825 1.20969 1.01213 0.92939 1.01831 1.20356 0.96697 0.95407 0.97307 1.20684 0.99229 0.95343 0.98889 1.21279 0.95050 0.93415 1.01392 1.23607 0.97755 0.87304 0.96047 0.89611 1.21420 0.81458 0.98617 0.96952 0.92282 0.95911 0.96356 0.77439 0.89907 0.91893 0.89358 0.89532 0.94049 0.90515 0.86446 0.85934 0.85991 0.86113 0.88923 0.89766 0.90131 0.88400 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.50 13.96 55.43 0.77 -25.73 16 2 C 0.08 2.19 5.47 -17.82 -0.10 2.10 16 3 Si 0.88 21.55 27.47 -169.99 -4.67 16.88 16 4 H -0.27 -6.61 7.11 56.52 0.40 -6.21 16 5 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 6 H -0.26 -6.37 6.54 56.52 0.37 -6.00 16 7 C -0.54 -14.90 9.83 -34.44 -0.34 -15.24 16 8 H 0.08 2.22 7.84 -52.49 -0.41 1.81 16 9 C 0.24 5.93 4.50 -5.19 -0.02 5.91 16 10 N -0.72 -15.03 5.46 -66.41 -0.36 -15.39 16 11 C 0.70 14.05 8.38 -86.91 -0.73 13.32 16 12 O -0.60 -14.23 15.90 5.30 0.08 -14.14 16 13 N -0.65 -9.56 3.06 -177.18 -0.54 -10.10 16 14 C 0.11 1.22 5.45 -2.77 -0.02 1.20 16 15 C -0.13 -1.17 5.25 -28.08 -0.15 -1.32 16 16 C 0.06 0.50 4.96 -6.11 -0.03 0.47 16 17 N -0.48 -4.96 4.28 -164.38 -0.70 -5.66 16 18 C 0.11 1.19 6.13 -83.74 -0.51 0.68 16 19 C -0.15 -1.37 9.73 -39.31 -0.38 -1.75 16 20 C -0.09 -0.77 10.02 -39.68 -0.40 -1.17 16 21 C -0.15 -1.24 10.06 -39.53 -0.40 -1.64 16 22 C -0.08 -0.73 10.02 -39.75 -0.40 -1.13 16 23 C -0.14 -1.45 6.23 -103.68 -0.65 -2.10 16 24 C -0.07 -0.75 6.48 -26.63 -0.17 -0.93 16 25 C 0.06 0.66 2.62 -66.00 -0.17 0.49 16 26 H 0.09 1.03 7.28 -51.93 -0.38 0.65 16 27 C 0.14 1.80 5.29 -4.04 -0.02 1.77 16 28 H 0.27 7.42 8.31 -40.82 -0.34 7.09 16 29 H 0.02 0.60 7.20 -51.93 -0.37 0.23 16 30 H 0.02 0.48 7.57 -51.93 -0.39 0.09 16 31 H 0.39 7.21 6.32 -40.82 -0.26 6.95 16 32 H 0.08 0.92 6.75 -51.93 -0.35 0.57 16 33 H 0.06 0.67 7.50 -51.93 -0.39 0.28 16 34 H 0.09 0.60 8.14 -51.93 -0.42 0.18 16 35 H 0.09 0.86 6.42 -51.93 -0.33 0.53 16 36 H 0.04 0.37 7.63 -51.93 -0.40 -0.02 16 37 H 0.08 0.59 7.71 -51.93 -0.40 0.19 16 38 H 0.12 0.92 7.71 -52.49 -0.40 0.52 16 39 H 0.12 0.73 8.06 -52.49 -0.42 0.30 16 40 H 0.12 0.74 8.06 -52.48 -0.42 0.32 16 41 H 0.12 0.90 8.06 -52.49 -0.42 0.47 16 42 H 0.09 0.91 7.92 -51.93 -0.41 0.50 16 43 H 0.08 0.81 8.14 -51.93 -0.42 0.39 16 44 H 0.08 0.99 6.29 -51.93 -0.33 0.66 16 45 H 0.10 1.42 6.87 -51.93 -0.36 1.06 16 LS Contribution 351.08 15.07 5.29 5.29 Total: -1.00 -32.96 351.08 -11.08 -44.04 By element: Atomic # 1 Polarization: 10.60 SS G_CDS: -6.46 Total: 4.13 kcal Atomic # 6 Polarization: 5.16 SS G_CDS: -4.48 Total: 0.67 kcal Atomic # 7 Polarization: -56.05 SS G_CDS: -0.84 Total: -56.88 kcal Atomic # 8 Polarization: -14.23 SS G_CDS: 0.08 Total: -14.14 kcal Atomic # 14 Polarization: 21.55 SS G_CDS: -4.67 Total: 16.88 kcal Total LS contribution 5.29 Total: 5.29 kcal Total: -32.96 -11.08 -44.04 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000335840507.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.259 kcal (2) G-P(sol) polarization free energy of solvation -32.965 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.294 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.076 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.041 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.218 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds