Wall clock time and date at job start Tue Mar 31 2020 12:00:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86806 * 119.99487 * 2 1 4 4 H 1.48496 * 109.47331 * 270.00247 * 3 2 1 5 5 H 1.48500 * 109.47111 * 30.01010 * 3 2 1 6 6 H 1.48504 * 109.46843 * 150.00532 * 3 2 1 7 7 C 1.37875 * 120.00353 * 180.02562 * 2 1 3 8 8 H 1.07989 * 120.00053 * 359.97438 * 7 2 1 9 9 C 1.50701 * 119.99708 * 179.97438 * 7 2 1 10 10 N 1.46500 * 109.46863 * 179.97438 * 9 7 2 11 11 C 1.34780 * 119.99837 * 179.97438 * 10 9 7 12 12 O 1.21579 * 120.00036 * 0.02562 * 11 10 9 13 13 N 1.34779 * 119.99379 * 180.02562 * 11 10 9 14 14 C 1.50217 * 122.09218 * 0.02562 * 13 11 10 15 15 C 1.51396 * 109.25592 * 152.01579 * 14 13 11 16 16 C 1.51936 * 113.03282 * 86.88029 * 15 14 13 17 17 N 1.43613 * 113.69239 * 278.63080 * 16 15 14 18 18 C 1.38981 * 117.36385 * 182.14318 * 17 16 15 19 19 C 1.39309 * 131.10959 * 35.59085 * 18 17 16 20 20 C 1.37896 * 120.32008 * 177.53991 * 19 18 17 21 21 C 1.38316 * 120.29127 * 359.97438 * 20 19 18 22 22 C 1.38312 * 119.84789 * 0.39718 * 21 20 19 23 23 C 1.37706 * 120.16642 * 0.02562 * 22 21 20 24 24 C 1.52015 * 131.70106 * 178.95795 * 23 22 21 25 25 C 1.49288 * 108.11557 * 61.12495 * 17 16 15 26 26 H 1.09003 * 113.04595 * 41.93358 * 25 17 16 27 27 C 1.46910 * 122.08201 * 180.02562 * 13 11 10 28 28 H 0.97001 * 120.00103 * 359.97438 * 1 2 3 29 29 H 1.09004 * 109.47328 * 60.00401 * 9 7 2 30 30 H 1.08998 * 109.47348 * 299.99928 * 9 7 2 31 31 H 0.97001 * 120.00315 * 0.02562 * 10 9 7 32 32 H 1.09002 * 109.50517 * 32.08379 * 14 13 11 33 33 H 1.08996 * 109.50987 * 271.95367 * 14 13 11 34 34 H 1.09002 * 108.75281 * 207.76141 * 15 14 13 35 35 H 1.09003 * 108.75693 * 326.00146 * 15 14 13 36 36 H 1.09003 * 108.62497 * 39.85103 * 16 15 14 37 37 H 1.08990 * 108.62941 * 157.64256 * 16 15 14 38 38 H 1.07997 * 119.84042 * 357.54279 * 19 18 17 39 39 H 1.07998 * 119.85566 * 179.97438 * 20 19 18 40 40 H 1.08003 * 120.07586 * 180.37824 * 21 20 19 41 41 H 1.08002 * 119.91840 * 180.02562 * 22 21 20 42 42 H 1.08998 * 110.95459 * 80.85885 * 24 23 22 43 43 H 1.09003 * 110.97759 * 317.15713 * 24 23 22 44 44 H 1.09003 * 109.69030 * 246.87675 * 27 13 11 45 45 H 1.09003 * 109.69299 * 7.45308 * 27 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6179 0.0000 4 1 2.4965 2.0466 -1.4000 5 1 1.4465 2.6527 0.7003 6 1 3.5467 1.4403 0.7000 7 6 2.0046 -1.1940 -0.0005 8 1 1.4647 -2.1292 -0.0005 9 6 3.5116 -1.1938 -0.0011 10 7 4.0000 -2.5750 -0.0010 11 6 5.3252 -2.8212 -0.0020 12 8 6.1152 -1.8970 -0.0025 13 7 5.7744 -4.0919 -0.0024 14 6 4.8406 -5.2685 -0.0024 15 6 5.5186 -6.4441 -0.6735 16 6 6.3604 -7.2707 0.2839 17 7 7.6625 -6.7181 0.5319 18 6 8.5142 -7.4374 1.3619 19 6 8.6943 -8.8095 1.5218 20 6 9.6533 -9.2894 2.3888 21 6 10.4456 -8.4125 3.1074 22 6 10.2697 -7.0483 2.9618 23 6 9.3081 -6.5623 2.1042 24 6 8.8818 -5.1437 1.7624 25 6 7.4850 -5.3713 1.1511 26 1 6.6961 -5.3479 1.9029 27 6 7.2081 -4.4126 -0.0029 28 1 -0.4850 0.8400 0.0004 29 1 3.8753 -0.6802 0.8889 30 1 3.8746 -0.6798 -0.8911 31 1 3.3698 -3.3124 -0.0010 32 1 3.9323 -5.0123 -0.5478 33 1 4.5872 -5.5321 1.0244 34 1 4.7544 -7.0859 -1.1118 35 1 6.1607 -6.0699 -1.4709 36 1 5.8288 -7.3540 1.2318 37 1 6.4813 -8.2704 -0.1330 38 1 8.0800 -9.5007 0.9640 39 1 9.7862 -10.3546 2.5073 40 1 11.1998 -8.7921 3.7809 41 1 10.8880 -6.3626 3.5220 42 1 9.5586 -4.6983 1.0334 43 1 8.8188 -4.5282 2.6598 44 1 7.4782 -4.8859 -0.9469 45 1 7.7888 -3.4998 0.1302 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000335840507.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:00:12 Heat of formation + Delta-G solvation = 8.122737 kcal Electronic energy + Delta-G solvation = -26244.082335 eV Core-core repulsion = 22647.119073 eV Total energy + Delta-G solvation = -3596.963262 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 315.169 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -42.32666 -40.86258 -38.76074 -36.37957 -36.22590 -34.80082 -34.39079 -32.28697 -31.28511 -30.08376 -29.44247 -27.08606 -26.41508 -24.04402 -23.50470 -22.26649 -22.25244 -21.54670 -20.65662 -19.57822 -18.42519 -18.17175 -17.49905 -17.06978 -16.76891 -16.60185 -16.24705 -15.89794 -15.48367 -15.20506 -15.06236 -14.85352 -14.43498 -14.36830 -14.25451 -14.16133 -13.75042 -13.46386 -13.33427 -13.11577 -12.99693 -12.88543 -12.70665 -12.39141 -12.32157 -12.11747 -11.91933 -11.89452 -11.64053 -11.63552 -11.15676 -10.94873 -10.91335 -10.12707 -9.72078 -9.48565 -8.64625 -8.39526 -6.46211 0.43938 0.50232 1.33762 1.35610 1.49151 1.63588 2.16556 2.29178 2.54169 2.91314 2.96133 3.06624 3.40424 3.60014 3.75004 3.79506 3.93403 4.00669 4.18249 4.23456 4.26610 4.34638 4.47568 4.53277 4.56730 4.61872 4.66670 4.70422 4.77817 4.79419 4.87704 4.96490 5.00891 5.05173 5.08873 5.21436 5.23021 5.29931 5.47424 5.53995 5.55876 5.66778 5.74477 5.95062 6.07139 6.19031 6.40123 6.54858 7.06471 7.19136 7.62576 8.75050 Molecular weight = 315.17amu Principal moments of inertia in cm(-1) A = 0.029065 B = 0.002724 C = 0.002589 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 963.115206 B =10276.548563 C =10812.572403 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.930 5.930 2 C 0.028 3.972 3 Si 0.937 3.063 4 H -0.265 1.265 5 H -0.273 1.273 6 H -0.261 1.261 7 C -0.544 4.544 8 H 0.059 0.941 9 C 0.252 3.748 10 N -0.721 5.721 11 C 0.702 3.298 12 O -0.642 6.642 13 N -0.637 5.637 14 C 0.104 3.896 15 C -0.123 4.123 16 C 0.056 3.944 17 N -0.480 5.480 18 C 0.092 3.908 19 C -0.153 4.153 20 C -0.096 4.096 21 C -0.152 4.152 22 C -0.089 4.089 23 C -0.158 4.158 24 C -0.073 4.073 25 C 0.067 3.933 26 H 0.076 0.924 27 C 0.143 3.857 28 H 0.273 0.727 29 H 0.009 0.991 30 H 0.009 0.991 31 H 0.403 0.597 32 H 0.084 0.916 33 H 0.072 0.928 34 H 0.116 0.884 35 H 0.077 0.923 36 H 0.041 0.959 37 H 0.094 0.906 38 H 0.131 0.869 39 H 0.148 0.852 40 H 0.145 0.855 41 H 0.133 0.867 42 H 0.092 0.908 43 H 0.085 0.915 44 H 0.090 0.910 45 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.950 -21.947 3.814 29.246 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.569 5.569 2 C -0.173 4.173 3 Si 0.760 3.240 4 H -0.190 1.190 5 H -0.198 1.198 6 H -0.186 1.186 7 C -0.582 4.582 8 H 0.077 0.923 9 C 0.127 3.873 10 N -0.375 5.375 11 C 0.403 3.597 12 O -0.525 6.525 13 N -0.376 5.376 14 C -0.017 4.017 15 C -0.161 4.161 16 C -0.071 4.071 17 N -0.194 5.194 18 C -0.007 4.007 19 C -0.174 4.174 20 C -0.114 4.114 21 C -0.171 4.171 22 C -0.108 4.108 23 C -0.160 4.160 24 C -0.111 4.111 25 C -0.040 4.040 26 H 0.094 0.906 27 C 0.020 3.980 28 H 0.082 0.918 29 H 0.027 0.973 30 H 0.027 0.973 31 H 0.239 0.761 32 H 0.103 0.897 33 H 0.091 0.909 34 H 0.135 0.865 35 H 0.096 0.904 36 H 0.059 0.941 37 H 0.112 0.888 38 H 0.149 0.851 39 H 0.166 0.834 40 H 0.163 0.837 41 H 0.151 0.849 42 H 0.110 0.890 43 H 0.103 0.897 44 H 0.108 0.892 45 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges 19.435 -21.098 3.256 28.869 hybrid contribution -0.759 0.646 0.505 1.117 sum 18.676 -20.451 3.760 27.950 Atomic orbital electron populations 1.69974 1.07609 1.28610 1.50696 1.25560 0.95536 1.02575 0.93579 0.85869 0.79255 0.79368 0.79472 1.18982 1.19751 1.18559 1.21240 0.89767 0.94570 1.52634 0.92275 1.18952 0.93107 0.79765 0.95446 1.45191 1.04558 1.09896 1.77838 1.16007 0.82775 0.83060 0.77840 1.90819 1.56188 1.44393 1.61118 1.48276 1.07802 1.03370 1.78172 1.22198 0.92678 0.84960 1.01830 1.21310 1.00141 0.95997 0.98665 1.21380 0.86949 0.99416 0.99347 1.59263 1.14391 1.04001 1.41714 1.19552 0.95930 0.93582 0.91609 1.20639 1.02256 0.92046 1.02475 1.21205 0.94256 1.00971 0.94992 1.21319 1.01428 0.92546 1.01786 1.20629 0.96609 0.96372 0.97172 1.20821 1.00178 0.95145 0.99906 1.21244 0.94532 0.93889 1.01387 1.23372 0.97935 0.87731 0.94954 0.90589 1.21488 0.79918 0.98271 0.98323 0.91825 0.97267 0.97346 0.76103 0.89722 0.90944 0.86546 0.90405 0.94089 0.88804 0.85089 0.83414 0.83698 0.84862 0.88950 0.89674 0.89163 0.90345 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.54 13.96 21.45 0.30 -55.24 16 2 C 0.03 1.59 5.47 84.65 0.46 2.05 16 3 Si 0.94 44.48 27.47 68.60 1.88 46.36 16 4 H -0.26 -12.18 7.11 99.48 0.71 -11.47 16 5 H -0.27 -12.36 7.11 99.48 0.71 -11.65 16 6 H -0.26 -12.39 6.54 99.48 0.65 -11.74 16 7 C -0.54 -30.29 9.83 25.60 0.25 -30.04 16 8 H 0.06 3.44 7.84 -2.92 -0.02 3.42 16 9 C 0.25 12.69 4.50 85.63 0.38 13.07 16 10 N -0.72 -30.25 5.46 -482.30 -2.64 -32.88 16 11 C 0.70 28.25 8.38 179.05 1.50 29.75 16 12 O -0.64 -31.01 15.90 -3.97 -0.06 -31.07 16 13 N -0.64 -18.68 3.06 -832.73 -2.55 -21.23 16 14 C 0.10 2.19 5.45 85.13 0.46 2.65 16 15 C -0.12 -1.90 5.25 29.72 0.16 -1.74 16 16 C 0.06 0.86 4.96 86.56 0.43 1.29 16 17 N -0.48 -9.31 4.28 -673.99 -2.89 -12.20 16 18 C 0.09 1.82 6.13 38.58 0.24 2.06 16 19 C -0.15 -2.50 9.73 22.45 0.22 -2.29 16 20 C -0.10 -1.32 10.02 22.21 0.22 -1.09 16 21 C -0.15 -2.14 10.06 22.31 0.22 -1.91 16 22 C -0.09 -1.51 10.02 22.16 0.22 -1.29 16 23 C -0.16 -3.17 6.23 -19.26 -0.12 -3.29 16 24 C -0.07 -1.48 6.48 30.66 0.20 -1.29 16 25 C 0.07 1.46 2.62 44.70 0.12 1.58 16 26 H 0.08 1.80 7.28 -2.39 -0.02 1.79 16 27 C 0.14 3.68 5.29 86.16 0.46 4.14 16 28 H 0.27 15.16 8.31 -92.71 -0.77 14.39 16 29 H 0.01 0.50 7.20 -2.38 -0.02 0.48 16 30 H 0.01 0.45 7.57 -2.39 -0.02 0.43 16 31 H 0.40 14.84 6.32 -92.71 -0.59 14.25 16 32 H 0.08 1.77 6.75 -2.39 -0.02 1.76 16 33 H 0.07 1.43 7.50 -2.39 -0.02 1.41 16 34 H 0.12 1.21 8.14 -2.39 -0.02 1.19 16 35 H 0.08 1.39 6.42 -2.39 -0.02 1.38 16 36 H 0.04 0.65 7.63 -2.39 -0.02 0.63 16 37 H 0.09 1.17 7.71 -2.39 -0.02 1.15 16 38 H 0.13 1.69 7.71 -2.91 -0.02 1.67 16 39 H 0.15 1.22 8.06 -2.91 -0.02 1.20 16 40 H 0.15 1.31 8.06 -2.91 -0.02 1.28 16 41 H 0.13 1.79 8.06 -2.91 -0.02 1.77 16 42 H 0.09 1.84 7.92 -2.39 -0.02 1.82 16 43 H 0.08 1.66 8.14 -2.39 -0.02 1.64 16 44 H 0.09 2.16 6.29 -2.39 -0.01 2.14 16 45 H 0.08 2.34 6.87 -2.39 -0.02 2.32 16 Total: -1.00 -71.20 351.08 -0.16 -71.36 By element: Atomic # 1 Polarization: 20.89 SS G_CDS: 0.37 Total: 21.25 kcal Atomic # 6 Polarization: 8.24 SS G_CDS: 5.42 Total: 13.66 kcal Atomic # 7 Polarization: -113.78 SS G_CDS: -7.77 Total: -121.55 kcal Atomic # 8 Polarization: -31.01 SS G_CDS: -0.06 Total: -31.07 kcal Atomic # 14 Polarization: 44.48 SS G_CDS: 1.88 Total: 46.36 kcal Total: -71.20 -0.16 -71.36 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000335840507.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.478 kcal (2) G-P(sol) polarization free energy of solvation -71.198 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.280 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.158 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.355 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.123 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds