Wall clock time and date at job start Tue Mar 31 2020 12:00:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86800 * 120.00125 * 2 1 4 4 H 1.48503 * 109.46845 * 269.99927 * 3 2 1 5 5 H 1.48503 * 109.47399 * 29.99417 * 3 2 1 6 6 H 1.48498 * 109.47295 * 150.00023 * 3 2 1 7 7 C 1.37877 * 120.00069 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00146 * 180.02562 * 7 2 1 9 9 C 1.50696 * 119.99842 * 0.02562 * 7 2 1 10 10 N 1.46505 * 109.47011 * 179.97438 * 9 7 2 11 11 C 1.34780 * 119.99588 * 179.97438 * 10 9 7 12 12 O 1.21579 * 120.00272 * 0.02562 * 11 10 9 13 13 N 1.34781 * 119.99440 * 180.02562 * 11 10 9 14 14 C 1.48538 * 122.03579 * 359.71585 * 13 11 10 15 15 C 1.53091 * 104.44026 * 106.41669 * 14 13 11 16 16 C 1.53590 * 110.94887 * 102.24177 * 15 14 13 17 17 N 1.48358 * 107.51844 * 302.79967 * 16 15 14 18 18 C 1.40276 * 109.72547 * 205.97770 * 17 16 15 19 19 C 1.39265 * 130.23837 * 323.87853 * 18 17 16 20 20 C 1.37950 * 120.13336 * 180.02562 * 19 18 17 21 21 C 1.38310 * 120.24894 * 359.97438 * 20 19 18 22 22 C 1.38318 * 119.93605 * 0.02562 * 21 20 19 23 23 C 1.37874 * 120.06137 * 359.97438 * 22 21 20 24 24 C 1.51652 * 131.74137 * 180.02562 * 23 22 21 25 25 C 1.44057 * 115.62326 * 329.75563 * 17 16 15 26 26 H 1.08997 * 110.60814 * 328.90615 * 25 17 16 27 27 C 1.44753 * 122.03345 * 180.02562 * 13 11 10 28 28 H 0.97000 * 119.99838 * 179.97438 * 1 2 3 29 29 H 1.09008 * 109.47053 * 299.99554 * 9 7 2 30 30 H 1.08991 * 109.47398 * 59.99511 * 9 7 2 31 31 H 0.97000 * 120.00105 * 359.97438 * 10 9 7 32 32 H 1.09007 * 110.37609 * 225.13970 * 14 13 11 33 33 H 1.08999 * 110.38137 * 347.54464 * 14 13 11 34 34 H 1.09004 * 109.24089 * 341.84162 * 15 14 13 35 35 H 1.09004 * 109.16884 * 222.59506 * 15 14 13 36 36 H 1.09005 * 109.85185 * 183.29695 * 16 15 14 37 37 H 1.09003 * 109.90575 * 62.33502 * 16 15 14 38 38 H 1.07998 * 119.93391 * 0.07612 * 19 18 17 39 39 H 1.08001 * 119.87556 * 179.97438 * 20 19 18 40 40 H 1.07995 * 120.02998 * 180.02562 * 21 20 19 41 41 H 1.07996 * 119.97044 * 180.02562 * 22 21 20 42 42 H 1.09003 * 110.79740 * 47.04644 * 24 23 22 43 43 H 1.09006 * 110.79424 * 283.57618 * 24 23 22 44 44 H 1.08999 * 109.10431 * 354.99893 * 27 13 11 45 45 H 1.08997 * 109.10554 * 114.03974 * 27 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 1.4466 2.6528 0.6999 6 1 3.5467 1.4402 0.7000 7 6 2.0046 -1.1940 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2511 -2.4991 0.0005 10 7 2.2031 -3.6126 0.0005 11 6 1.7537 -4.8833 0.0011 12 8 0.5584 -5.1055 0.0011 13 7 2.6296 -5.9078 0.0016 14 6 4.0987 -5.6883 -0.0046 15 6 4.5434 -6.0411 1.4171 16 6 5.1880 -7.4346 1.4611 17 7 4.1956 -8.4025 0.9325 18 6 4.4446 -9.6753 1.4670 19 6 5.6498 -10.3033 1.7710 20 6 5.6528 -11.5787 2.2969 21 6 4.4603 -12.2408 2.5258 22 6 3.2594 -11.6232 2.2263 23 6 3.2505 -10.3487 1.7006 24 6 2.1130 -9.4368 1.2827 25 6 2.8136 -8.0620 1.1549 26 1 2.7014 -7.5001 2.0822 27 6 2.1959 -7.2888 0.0016 28 1 -0.4850 -0.8401 -0.0004 29 1 0.6241 -2.5567 0.8904 30 1 0.6247 -2.5570 -0.8895 31 1 3.1568 -3.4354 0.0002 32 1 4.5779 -6.3478 -0.7283 33 1 4.3259 -4.6463 -0.2297 34 1 3.6771 -6.0265 2.0785 35 1 5.2667 -5.3012 1.7599 36 1 5.4445 -7.6915 2.4889 37 1 6.0847 -7.4484 0.8415 38 1 6.5840 -9.7906 1.5955 39 1 6.5900 -12.0620 2.5307 40 1 4.4667 -13.2389 2.9380 41 1 2.3279 -12.1395 2.4052 42 1 1.3387 -9.4077 2.0493 43 1 1.6986 -9.7495 0.3242 44 1 1.1101 -7.3217 0.0909 45 1 2.4897 -7.7550 -0.9388 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000335840508.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:00:16 Heat of formation + Delta-G solvation = 21.008904 kcal Electronic energy + Delta-G solvation = -26350.464600 eV Core-core repulsion = 22754.060124 eV Total energy + Delta-G solvation = -3596.404476 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 315.169 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.49413 -39.58292 -37.68595 -35.32188 -34.61460 -33.91274 -32.42983 -31.38192 -30.17028 -28.84716 -27.04770 -26.07568 -25.09199 -22.84641 -22.50498 -22.01346 -21.49756 -19.84502 -19.41196 -18.25972 -17.00092 -16.84847 -16.60113 -16.17417 -15.57651 -15.38668 -14.77352 -14.44815 -14.35336 -14.04399 -13.82604 -13.53442 -13.34594 -13.21004 -13.07750 -12.83593 -12.34158 -12.23993 -12.17463 -11.86586 -11.80883 -11.68225 -11.60620 -11.38384 -11.14370 -11.02961 -10.87434 -10.77758 -10.18756 -9.96141 -9.54646 -9.03409 -8.79573 -8.72004 -8.51167 -7.89840 -7.84122 -6.51714 -4.24918 1.14143 1.18062 3.04806 3.26601 3.36850 3.40152 3.55790 3.59467 3.78505 4.25185 4.30345 4.41508 4.50840 4.66134 4.71079 4.77250 4.79588 4.89387 4.98396 5.07248 5.20671 5.26312 5.27390 5.28071 5.35749 5.42104 5.49936 5.54328 5.62126 5.67279 5.76882 5.79250 5.96936 6.03729 6.10643 6.22486 6.31692 6.52205 6.59358 6.86533 6.95056 7.01429 7.25694 7.34530 7.43585 7.80146 8.28253 8.59597 8.77191 9.21839 9.49503 10.88653 Molecular weight = 315.17amu Principal moments of inertia in cm(-1) A = 0.031918 B = 0.002676 C = 0.002524 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 877.050739 B =10461.153565 C =11092.382353 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.902 5.902 2 C 0.022 3.978 3 Si 1.079 2.921 4 H -0.286 1.286 5 H -0.282 1.282 6 H -0.288 1.288 7 C -0.622 4.622 8 H 0.056 0.944 9 C 0.257 3.743 10 N -0.722 5.722 11 C 0.701 3.299 12 O -0.600 6.600 13 N -0.639 5.639 14 C 0.117 3.883 15 C -0.156 4.156 16 C 0.061 3.939 17 N -0.487 5.487 18 C 0.108 3.892 19 C -0.142 4.142 20 C -0.094 4.094 21 C -0.151 4.151 22 C -0.079 4.079 23 C -0.145 4.145 24 C -0.079 4.079 25 C 0.078 3.922 26 H 0.070 0.930 27 C 0.143 3.857 28 H 0.273 0.727 29 H 0.015 0.985 30 H 0.015 0.985 31 H 0.388 0.612 32 H 0.085 0.915 33 H 0.083 0.917 34 H 0.078 0.922 35 H 0.080 0.920 36 H 0.055 0.945 37 H 0.086 0.914 38 H 0.120 0.880 39 H 0.123 0.877 40 H 0.122 0.878 41 H 0.120 0.880 42 H 0.085 0.915 43 H 0.092 0.908 44 H 0.099 0.901 45 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.418 -22.622 4.438 26.673 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.537 5.537 2 C -0.183 4.183 3 Si 0.906 3.094 4 H -0.213 1.213 5 H -0.208 1.208 6 H -0.214 1.214 7 C -0.660 4.660 8 H 0.074 0.926 9 C 0.135 3.865 10 N -0.376 5.376 11 C 0.403 3.597 12 O -0.479 6.479 13 N -0.377 5.377 14 C -0.007 4.007 15 C -0.195 4.195 16 C -0.064 4.064 17 N -0.201 5.201 18 C 0.010 3.990 19 C -0.164 4.164 20 C -0.113 4.113 21 C -0.170 4.170 22 C -0.098 4.098 23 C -0.148 4.148 24 C -0.116 4.116 25 C -0.031 4.031 26 H 0.087 0.913 27 C 0.017 3.983 28 H 0.084 0.916 29 H 0.032 0.968 30 H 0.033 0.967 31 H 0.223 0.777 32 H 0.104 0.896 33 H 0.101 0.899 34 H 0.096 0.904 35 H 0.098 0.902 36 H 0.073 0.927 37 H 0.104 0.896 38 H 0.138 0.862 39 H 0.141 0.859 40 H 0.140 0.860 41 H 0.138 0.862 42 H 0.103 0.897 43 H 0.110 0.890 44 H 0.117 0.883 45 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 12.311 -20.893 3.902 24.562 hybrid contribution 0.741 -1.647 0.651 1.920 sum 13.051 -22.540 4.554 26.441 Atomic orbital electron populations 1.70722 1.06863 1.31126 1.44981 1.25868 0.96436 1.02679 0.93361 0.83410 0.74485 0.74636 0.76866 1.21267 1.20782 1.21412 1.22066 0.94510 0.91469 1.57951 0.92585 1.19050 0.88507 0.82620 0.96313 1.45621 1.10774 1.04056 1.77109 1.15969 0.84637 0.80984 0.78140 1.90858 1.13968 1.83903 1.59183 1.47256 1.05677 1.05130 1.79636 1.22010 0.80559 1.01870 0.96225 1.22614 1.01958 0.96174 0.98745 1.22754 0.94401 0.90447 0.98774 1.58395 1.04510 1.01212 1.56004 1.19691 0.94174 0.91447 0.93725 1.20377 0.95779 0.96114 1.04088 1.20865 0.98163 0.94019 0.98244 1.20959 0.92202 1.00271 1.03589 1.20379 0.98260 0.93250 0.97862 1.20556 0.94877 0.96208 1.03124 1.21431 0.96130 0.91461 1.02627 1.22040 0.85065 0.96334 0.99612 0.91256 1.20722 1.00539 0.80352 0.96652 0.91615 0.96756 0.96740 0.77749 0.89637 0.89854 0.90361 0.90152 0.92714 0.89583 0.86209 0.85900 0.86041 0.86198 0.89670 0.89018 0.88254 0.91584 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.40 13.65 55.43 0.76 -26.64 16 2 C 0.02 0.63 5.46 -17.82 -0.10 0.54 16 3 Si 1.08 24.44 29.90 -169.99 -5.08 19.36 16 4 H -0.29 -6.25 7.11 56.52 0.40 -5.84 16 5 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 6 H -0.29 -6.12 7.11 56.52 0.40 -5.72 16 7 C -0.62 -17.14 9.28 -34.44 -0.32 -17.46 16 8 H 0.06 1.46 7.60 -52.49 -0.40 1.07 16 9 C 0.26 6.88 4.74 -5.19 -0.02 6.85 16 10 N -0.72 -15.75 5.48 -66.41 -0.36 -16.12 16 11 C 0.70 14.67 8.36 -86.91 -0.73 13.95 16 12 O -0.60 -14.91 15.84 5.30 0.08 -14.83 16 13 N -0.64 -9.96 2.50 -179.70 -0.45 -10.41 16 14 C 0.12 1.40 6.07 -2.87 -0.02 1.38 16 15 C -0.16 -1.64 5.45 -26.38 -0.14 -1.79 16 16 C 0.06 0.57 5.32 -2.71 -0.01 0.55 16 17 N -0.49 -5.28 4.41 -163.22 -0.72 -6.00 16 18 C 0.11 1.17 5.86 -83.30 -0.49 0.68 16 19 C -0.14 -1.33 9.35 -39.31 -0.37 -1.70 16 20 C -0.09 -0.78 10.02 -39.66 -0.40 -1.18 16 21 C -0.15 -1.26 10.06 -39.53 -0.40 -1.65 16 22 C -0.08 -0.73 10.03 -39.69 -0.40 -1.13 16 23 C -0.14 -1.53 6.25 -103.98 -0.65 -2.18 16 24 C -0.08 -0.80 6.53 -26.45 -0.17 -0.98 16 25 C 0.08 0.90 2.37 -68.78 -0.16 0.74 16 26 H 0.07 0.89 6.35 -51.93 -0.33 0.56 16 27 C 0.14 1.94 5.33 -5.50 -0.03 1.91 16 28 H 0.27 8.42 7.22 -40.82 -0.29 8.13 16 29 H 0.01 0.42 8.01 -51.92 -0.42 0.01 16 30 H 0.01 0.43 8.01 -51.93 -0.42 0.01 16 31 H 0.39 7.39 5.99 -40.82 -0.24 7.15 16 32 H 0.09 0.93 7.74 -51.93 -0.40 0.53 16 33 H 0.08 1.00 5.98 -51.93 -0.31 0.69 16 34 H 0.08 1.00 5.89 -51.93 -0.31 0.69 16 35 H 0.08 0.73 8.14 -51.93 -0.42 0.31 16 36 H 0.05 0.50 7.66 -51.93 -0.40 0.10 16 37 H 0.09 0.69 8.14 -51.93 -0.42 0.27 16 38 H 0.12 0.94 7.85 -52.49 -0.41 0.53 16 39 H 0.12 0.73 8.06 -52.49 -0.42 0.31 16 40 H 0.12 0.74 8.06 -52.49 -0.42 0.32 16 41 H 0.12 0.89 8.06 -52.49 -0.42 0.47 16 42 H 0.08 0.80 8.14 -51.93 -0.42 0.38 16 43 H 0.09 0.88 7.86 -51.93 -0.41 0.47 16 44 H 0.10 1.50 6.97 -51.93 -0.36 1.14 16 45 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 LS Contribution 353.44 15.07 5.33 5.33 Total: -1.00 -33.47 353.44 -11.31 -44.78 By element: Atomic # 1 Polarization: 12.44 SS G_CDS: -6.45 Total: 5.99 kcal Atomic # 6 Polarization: 2.96 SS G_CDS: -4.41 Total: -1.45 kcal Atomic # 7 Polarization: -58.40 SS G_CDS: -0.78 Total: -59.17 kcal Atomic # 8 Polarization: -14.91 SS G_CDS: 0.08 Total: -14.83 kcal Atomic # 14 Polarization: 24.44 SS G_CDS: -5.08 Total: 19.36 kcal Total LS contribution 5.33 Total: 5.33 kcal Total: -33.47 -11.31 -44.78 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000335840508.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.786 kcal (2) G-P(sol) polarization free energy of solvation -33.468 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.318 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.309 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.777 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.009 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds