Wall clock time and date at job start Tue Mar 31 2020 12:00:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86800 * 120.00125 * 2 1 4 4 H 1.48503 * 109.46845 * 269.99927 * 3 2 1 5 5 H 1.48503 * 109.47399 * 29.99417 * 3 2 1 6 6 H 1.48498 * 109.47295 * 150.00023 * 3 2 1 7 7 C 1.37877 * 120.00069 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00146 * 180.02562 * 7 2 1 9 9 C 1.50696 * 119.99842 * 0.02562 * 7 2 1 10 10 N 1.46505 * 109.47011 * 179.97438 * 9 7 2 11 11 C 1.34780 * 119.99588 * 179.97438 * 10 9 7 12 12 O 1.21579 * 120.00272 * 0.02562 * 11 10 9 13 13 N 1.34781 * 119.99440 * 180.02562 * 11 10 9 14 14 C 1.48538 * 122.03579 * 359.71585 * 13 11 10 15 15 C 1.53091 * 104.44026 * 106.41669 * 14 13 11 16 16 C 1.53590 * 110.94887 * 102.24177 * 15 14 13 17 17 N 1.48358 * 107.51844 * 302.79967 * 16 15 14 18 18 C 1.40276 * 109.72547 * 205.97770 * 17 16 15 19 19 C 1.39265 * 130.23837 * 323.87853 * 18 17 16 20 20 C 1.37950 * 120.13336 * 180.02562 * 19 18 17 21 21 C 1.38310 * 120.24894 * 359.97438 * 20 19 18 22 22 C 1.38318 * 119.93605 * 0.02562 * 21 20 19 23 23 C 1.37874 * 120.06137 * 359.97438 * 22 21 20 24 24 C 1.51652 * 131.74137 * 180.02562 * 23 22 21 25 25 C 1.44057 * 115.62326 * 329.75563 * 17 16 15 26 26 H 1.08997 * 110.60814 * 328.90615 * 25 17 16 27 27 C 1.44753 * 122.03345 * 180.02562 * 13 11 10 28 28 H 0.97000 * 119.99838 * 179.97438 * 1 2 3 29 29 H 1.09008 * 109.47053 * 299.99554 * 9 7 2 30 30 H 1.08991 * 109.47398 * 59.99511 * 9 7 2 31 31 H 0.97000 * 120.00105 * 359.97438 * 10 9 7 32 32 H 1.09007 * 110.37609 * 225.13970 * 14 13 11 33 33 H 1.08999 * 110.38137 * 347.54464 * 14 13 11 34 34 H 1.09004 * 109.24089 * 341.84162 * 15 14 13 35 35 H 1.09004 * 109.16884 * 222.59506 * 15 14 13 36 36 H 1.09005 * 109.85185 * 183.29695 * 16 15 14 37 37 H 1.09003 * 109.90575 * 62.33502 * 16 15 14 38 38 H 1.07998 * 119.93391 * 0.07612 * 19 18 17 39 39 H 1.08001 * 119.87556 * 179.97438 * 20 19 18 40 40 H 1.07995 * 120.02998 * 180.02562 * 21 20 19 41 41 H 1.07996 * 119.97044 * 180.02562 * 22 21 20 42 42 H 1.09003 * 110.79740 * 47.04644 * 24 23 22 43 43 H 1.09006 * 110.79424 * 283.57618 * 24 23 22 44 44 H 1.08999 * 109.10431 * 354.99893 * 27 13 11 45 45 H 1.08997 * 109.10554 * 114.03974 * 27 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 1.4466 2.6528 0.6999 6 1 3.5467 1.4402 0.7000 7 6 2.0046 -1.1940 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2511 -2.4991 0.0005 10 7 2.2031 -3.6126 0.0005 11 6 1.7537 -4.8833 0.0011 12 8 0.5584 -5.1055 0.0011 13 7 2.6296 -5.9078 0.0016 14 6 4.0987 -5.6883 -0.0046 15 6 4.5434 -6.0411 1.4171 16 6 5.1880 -7.4346 1.4611 17 7 4.1956 -8.4025 0.9325 18 6 4.4446 -9.6753 1.4670 19 6 5.6498 -10.3033 1.7710 20 6 5.6528 -11.5787 2.2969 21 6 4.4603 -12.2408 2.5258 22 6 3.2594 -11.6232 2.2263 23 6 3.2505 -10.3487 1.7006 24 6 2.1130 -9.4368 1.2827 25 6 2.8136 -8.0620 1.1549 26 1 2.7014 -7.5001 2.0822 27 6 2.1959 -7.2888 0.0016 28 1 -0.4850 -0.8401 -0.0004 29 1 0.6241 -2.5567 0.8904 30 1 0.6247 -2.5570 -0.8895 31 1 3.1568 -3.4354 0.0002 32 1 4.5779 -6.3478 -0.7283 33 1 4.3259 -4.6463 -0.2297 34 1 3.6771 -6.0265 2.0785 35 1 5.2667 -5.3012 1.7599 36 1 5.4445 -7.6915 2.4889 37 1 6.0847 -7.4484 0.8415 38 1 6.5840 -9.7906 1.5955 39 1 6.5900 -12.0620 2.5307 40 1 4.4667 -13.2389 2.9380 41 1 2.3279 -12.1395 2.4052 42 1 1.3387 -9.4077 2.0493 43 1 1.6986 -9.7495 0.3242 44 1 1.1101 -7.3217 0.0909 45 1 2.4897 -7.7550 -0.9388 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000335840508.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:00:16 Heat of formation + Delta-G solvation = -0.146524 kcal Electronic energy + Delta-G solvation = -26351.381969 eV Core-core repulsion = 22754.060124 eV Total energy + Delta-G solvation = -3597.321844 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 315.169 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -42.39249 -41.01924 -38.69287 -36.55536 -36.43703 -34.93507 -34.41292 -32.20486 -31.17550 -29.69499 -28.81743 -27.08808 -26.35802 -24.72042 -23.47672 -22.98047 -22.29107 -21.07273 -20.67487 -19.85976 -18.53068 -17.78515 -17.68466 -17.52418 -16.69944 -16.40272 -15.93111 -15.73085 -15.64470 -15.21487 -15.09021 -15.06307 -14.52577 -14.32116 -14.22984 -14.06617 -13.82301 -13.58118 -13.12006 -13.10988 -13.00138 -12.87831 -12.56071 -12.47200 -12.43776 -12.30869 -11.97364 -11.88658 -11.69933 -11.31647 -10.92544 -10.77727 -10.72985 -10.20784 -9.71532 -9.55048 -8.80048 -8.62838 -6.55232 0.44858 0.49874 1.54879 1.61905 1.65494 1.82769 2.05270 2.49893 2.54851 2.90103 3.01023 3.08451 3.43607 3.51209 3.74928 3.80981 3.92023 4.04521 4.09062 4.17910 4.23452 4.35975 4.43772 4.53455 4.54747 4.60164 4.66024 4.67955 4.69206 4.75274 4.85512 4.90969 4.96773 5.00708 5.08167 5.12586 5.33851 5.42657 5.44685 5.53585 5.60462 5.66089 5.81485 5.95979 6.06596 6.10161 6.28897 6.33459 7.00659 7.28253 7.55887 8.59507 Molecular weight = 315.17amu Principal moments of inertia in cm(-1) A = 0.031918 B = 0.002676 C = 0.002524 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 877.050739 B =10461.153565 C =11092.382353 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.930 5.930 2 C -0.032 4.032 3 Si 1.133 2.867 4 H -0.270 1.270 5 H -0.285 1.285 6 H -0.259 1.259 7 C -0.627 4.627 8 H 0.076 0.924 9 C 0.273 3.727 10 N -0.717 5.717 11 C 0.698 3.302 12 O -0.647 6.647 13 N -0.627 5.627 14 C 0.114 3.886 15 C -0.149 4.149 16 C 0.065 3.935 17 N -0.491 5.491 18 C 0.088 3.912 19 C -0.147 4.147 20 C -0.096 4.096 21 C -0.152 4.152 22 C -0.089 4.089 23 C -0.164 4.164 24 C -0.077 4.077 25 C 0.088 3.912 26 H 0.053 0.947 27 C 0.144 3.856 28 H 0.254 0.746 29 H -0.019 1.019 30 H -0.019 1.019 31 H 0.403 0.597 32 H 0.105 0.895 33 H 0.086 0.914 34 H 0.053 0.947 35 H 0.101 0.899 36 H 0.059 0.941 37 H 0.108 0.892 38 H 0.135 0.865 39 H 0.149 0.851 40 H 0.145 0.855 41 H 0.133 0.867 42 H 0.087 0.913 43 H 0.095 0.905 44 H 0.078 0.922 45 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.093 -23.656 4.766 29.572 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.565 5.565 2 C -0.231 4.231 3 Si 0.952 3.048 4 H -0.196 1.196 5 H -0.211 1.211 6 H -0.184 1.184 7 C -0.664 4.664 8 H 0.094 0.906 9 C 0.149 3.851 10 N -0.372 5.372 11 C 0.399 3.601 12 O -0.529 6.529 13 N -0.364 5.364 14 C -0.007 4.007 15 C -0.188 4.188 16 C -0.059 4.059 17 N -0.206 5.206 18 C -0.011 4.011 19 C -0.168 4.168 20 C -0.115 4.115 21 C -0.171 4.171 22 C -0.108 4.108 23 C -0.167 4.167 24 C -0.115 4.115 25 C -0.021 4.021 26 H 0.071 0.929 27 C 0.019 3.981 28 H 0.063 0.937 29 H -0.001 1.001 30 H -0.001 1.001 31 H 0.241 0.759 32 H 0.123 0.877 33 H 0.104 0.896 34 H 0.071 0.929 35 H 0.119 0.881 36 H 0.077 0.923 37 H 0.126 0.874 38 H 0.153 0.847 39 H 0.167 0.833 40 H 0.163 0.837 41 H 0.151 0.849 42 H 0.106 0.894 43 H 0.113 0.887 44 H 0.096 0.904 45 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 16.068 -22.010 4.234 27.579 hybrid contribution -0.372 -1.509 0.572 1.656 sum 15.696 -23.519 4.806 28.682 Atomic orbital electron populations 1.70871 1.08282 1.29969 1.47419 1.27666 0.96347 1.07125 0.91959 0.82759 0.74175 0.69909 0.77964 1.19580 1.21089 1.18357 1.22400 0.95506 0.91524 1.56990 0.90633 1.18545 0.88762 0.84587 0.93193 1.45231 1.10747 1.03507 1.77738 1.16107 0.84622 0.81511 0.77811 1.90820 1.16405 1.84642 1.61079 1.47244 1.06819 1.04604 1.77749 1.22310 0.77833 1.02626 0.97977 1.22506 1.01543 0.97836 0.96897 1.22822 0.94503 0.89019 0.99554 1.58419 1.03885 1.01782 1.56466 1.19879 0.94914 0.91376 0.94902 1.20647 0.95799 0.96628 1.03709 1.21240 0.99321 0.93660 0.97237 1.21316 0.91845 1.01211 1.02708 1.20649 0.99499 0.92964 0.97659 1.20698 0.94776 0.96990 1.04207 1.21399 0.96336 0.90774 1.02977 1.21758 0.86306 0.96469 0.97543 0.92908 1.20819 0.99643 0.79371 0.98251 0.93676 1.00142 1.00146 0.75908 0.87655 0.89605 0.92856 0.88107 0.92278 0.87423 0.84708 0.83311 0.83738 0.84921 0.89419 0.88705 0.90390 0.90400 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -58.09 13.65 21.45 0.29 -57.80 16 2 C -0.03 -1.84 5.46 84.65 0.46 -1.38 16 3 Si 1.13 48.00 29.90 68.60 2.05 50.05 16 4 H -0.27 -10.75 7.11 99.48 0.71 -10.04 16 5 H -0.29 -12.17 7.11 99.48 0.71 -11.46 16 6 H -0.26 -9.74 7.11 99.48 0.71 -9.03 16 7 C -0.63 -34.70 9.28 25.60 0.24 -34.46 16 8 H 0.08 3.82 7.60 -2.91 -0.02 3.80 16 9 C 0.27 15.27 4.74 85.63 0.41 15.67 16 10 N -0.72 -32.00 5.48 -482.29 -2.64 -34.64 16 11 C 0.70 30.26 8.36 179.05 1.50 31.76 16 12 O -0.65 -34.02 15.84 -3.97 -0.06 -34.09 16 13 N -0.63 -19.72 2.50 -840.70 -2.10 -21.82 16 14 C 0.11 2.56 6.07 86.02 0.52 3.08 16 15 C -0.15 -2.88 5.45 30.82 0.17 -2.71 16 16 C 0.07 1.06 5.32 86.22 0.46 1.52 16 17 N -0.49 -9.90 4.41 -670.32 -2.96 -12.86 16 18 C 0.09 1.74 5.86 38.23 0.22 1.97 16 19 C -0.15 -2.36 9.35 22.45 0.21 -2.15 16 20 C -0.10 -1.29 10.02 22.22 0.22 -1.07 16 21 C -0.15 -2.11 10.06 22.31 0.22 -1.89 16 22 C -0.09 -1.50 10.03 22.20 0.22 -1.28 16 23 C -0.16 -3.31 6.25 -19.45 -0.12 -3.43 16 24 C -0.08 -1.58 6.53 30.78 0.20 -1.38 16 25 C 0.09 2.04 2.37 45.73 0.11 2.15 16 26 H 0.05 1.40 6.35 -2.39 -0.02 1.38 16 27 C 0.14 3.98 5.33 86.37 0.46 4.44 16 28 H 0.25 16.53 7.22 -92.71 -0.67 15.86 16 29 H -0.02 -1.20 8.01 -2.38 -0.02 -1.21 16 30 H -0.02 -1.20 8.01 -2.39 -0.02 -1.22 16 31 H 0.40 15.17 5.99 -92.71 -0.56 14.61 16 32 H 0.11 2.01 7.74 -2.38 -0.02 1.99 16 33 H 0.09 1.89 5.98 -2.39 -0.01 1.88 16 34 H 0.05 1.34 5.89 -2.39 -0.01 1.32 16 35 H 0.10 1.56 8.14 -2.38 -0.02 1.54 16 36 H 0.06 0.94 7.66 -2.38 -0.02 0.92 16 37 H 0.11 1.32 8.14 -2.39 -0.02 1.30 16 38 H 0.14 1.67 7.85 -2.91 -0.02 1.65 16 39 H 0.15 1.18 8.06 -2.91 -0.02 1.15 16 40 H 0.14 1.28 8.06 -2.91 -0.02 1.26 16 41 H 0.13 1.77 8.06 -2.91 -0.02 1.74 16 42 H 0.09 1.69 8.14 -2.39 -0.02 1.67 16 43 H 0.09 1.83 7.86 -2.38 -0.02 1.81 16 44 H 0.08 2.50 6.97 -2.39 -0.02 2.49 16 45 H 0.08 1.99 8.14 -2.39 -0.02 1.97 16 Total: -1.00 -75.56 353.44 0.64 -74.92 By element: Atomic # 1 Polarization: 24.84 SS G_CDS: 0.55 Total: 25.39 kcal Atomic # 6 Polarization: 5.35 SS G_CDS: 5.50 Total: 10.85 kcal Atomic # 7 Polarization: -119.72 SS G_CDS: -7.40 Total: -127.12 kcal Atomic # 8 Polarization: -34.02 SS G_CDS: -0.06 Total: -34.09 kcal Atomic # 14 Polarization: 48.00 SS G_CDS: 2.05 Total: 50.05 kcal Total: -75.56 0.64 -74.92 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000335840508.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.773 kcal (2) G-P(sol) polarization free energy of solvation -75.555 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.782 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.636 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.920 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.147 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds