Wall clock time and date at job start Tue Mar 31 2020 11:28:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.42904 * 113.99751 * 2 1 4 4 C 1.53001 * 109.46710 * 180.02562 * 3 2 1 5 5 N 1.46494 * 109.47162 * 66.09617 * 4 3 2 6 6 C 1.36939 * 119.99758 * 275.01577 * 5 4 3 7 7 H 1.08003 * 119.99647 * 142.07340 * 6 5 4 8 8 C 1.38809 * 120.00318 * 322.07270 * 6 5 4 9 9 N 1.31618 * 120.00451 * 155.19871 * 8 6 5 10 10 Si 1.86806 * 119.99899 * 335.19845 * 8 6 5 11 11 H 1.48503 * 109.46971 * 94.96175 * 10 8 6 12 12 H 1.48499 * 109.46971 * 214.96084 * 10 8 6 13 13 H 1.48497 * 109.47201 * 334.96253 * 10 8 6 14 14 C 1.46499 * 120.00124 * 95.02182 * 5 4 3 15 15 C 1.50699 * 109.46881 * 269.99786 * 14 5 4 16 16 C 1.39369 * 119.50674 * 90.00104 * 15 14 5 17 17 C 1.36087 * 120.98394 * 180.02562 * 16 15 14 18 18 C 1.40573 * 119.65733 * 359.97438 * 17 16 15 19 19 C 1.40457 * 121.23692 * 179.97438 * 18 17 16 20 20 C 1.36573 * 119.61989 * 180.02562 * 19 18 17 21 21 O 1.35885 * 119.56713 * 179.97438 * 20 19 18 22 22 C 1.42895 * 117.00200 * 179.97438 * 21 20 19 23 23 C 1.39847 * 120.86805 * 359.97438 * 20 19 18 24 24 C 1.35986 * 120.93131 * 0.02562 * 23 20 19 25 25 C 1.40592 * 119.72864 * 0.02562 * 24 23 20 26 26 C 1.36112 * 119.50188 * 270.25535 * 15 14 5 27 27 H 1.08999 * 109.46644 * 180.02562 * 1 2 3 28 28 H 1.09002 * 109.46521 * 299.99736 * 1 2 3 29 29 H 1.08994 * 109.47457 * 59.99437 * 1 2 3 30 30 H 1.08999 * 109.47075 * 60.00074 * 3 2 1 31 31 H 1.08994 * 109.47242 * 300.00001 * 3 2 1 32 32 H 1.09004 * 109.47132 * 306.08752 * 4 3 2 33 33 H 1.09005 * 109.46706 * 186.09963 * 4 3 2 34 34 H 0.96996 * 120.00173 * 180.02562 * 9 8 6 35 35 H 1.09002 * 109.46998 * 149.99400 * 14 5 4 36 36 H 1.08998 * 109.46859 * 29.99977 * 14 5 4 37 37 H 1.07999 * 119.50557 * 0.02562 * 16 15 14 38 38 H 1.08002 * 120.16851 * 180.02562 * 17 16 15 39 39 H 1.08000 * 120.19207 * 0.04500 * 19 18 17 40 40 H 1.09005 * 109.46881 * 60.00633 * 22 21 20 41 41 H 1.09002 * 109.47393 * 179.97438 * 22 21 20 42 42 H 1.08994 * 109.47685 * 300.00735 * 22 21 20 43 43 H 1.08006 * 119.53881 * 180.02562 * 23 20 19 44 44 H 1.08002 * 120.13456 * 180.02562 * 24 23 20 45 45 H 1.07997 * 120.16295 * 359.73251 * 26 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5355 1.1847 -0.0006 5 7 3.9775 0.5884 -1.2636 6 6 4.0005 -0.7733 -1.4069 7 1 3.7186 -1.2220 -2.3480 8 6 4.3859 -1.5768 -0.3427 9 7 3.9684 -2.8231 -0.2740 10 14 5.4972 -0.8892 0.9922 11 1 4.6682 -0.3987 2.1224 12 1 6.4101 -1.9565 1.4746 13 1 6.2967 0.2341 0.4407 14 6 4.3952 1.4489 -2.3733 15 6 3.2019 1.7721 -3.2349 16 6 2.4353 2.9007 -2.9504 17 6 1.3512 3.2206 -3.7084 18 6 0.9969 2.4029 -4.7956 19 6 -0.1155 2.7016 -5.5994 20 6 -0.4301 1.8840 -6.6472 21 8 -1.5068 2.1737 -7.4239 22 6 -1.7855 1.2821 -8.5052 23 6 0.3413 0.7527 -6.9313 24 6 1.4242 0.4364 -6.1721 25 6 1.7766 1.2552 -5.0849 26 6 2.8858 0.9545 -4.2762 27 1 -0.3632 -1.0277 0.0005 28 1 -0.3632 0.5138 0.8901 29 1 -0.3634 0.5139 -0.8899 30 1 1.6886 1.8464 0.8900 31 1 1.6886 1.8464 -0.8899 32 1 3.8502 0.5524 0.8296 33 1 3.9784 2.1747 0.1086 34 1 4.2375 -3.3844 0.4699 35 1 5.1459 0.9320 -2.9712 36 1 4.8185 2.3721 -1.9777 37 1 2.7056 3.5308 -2.1160 38 1 0.7667 4.0986 -3.4763 39 1 -0.7184 3.5729 -5.3904 40 1 -1.9678 0.2814 -8.1132 41 1 -2.6684 1.6277 -9.0429 42 1 -0.9331 1.2565 -9.1840 43 1 0.0733 0.1212 -7.7655 44 1 2.0112 -0.4402 -6.4033 45 1 3.4893 0.0835 -4.4848 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000343010466.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:28:40 Heat of formation + Delta-G solvation = -24.804377 kcal Electronic energy + Delta-G solvation = -26644.781423 eV Core-core repulsion = 23014.097583 eV Total energy + Delta-G solvation = -3630.683840 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 315.162 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -41.54866 -39.96748 -38.88316 -37.50986 -36.12835 -33.87469 -33.44558 -31.54541 -30.75287 -30.00752 -28.17652 -27.18940 -26.90985 -24.69366 -24.12389 -23.09140 -22.87532 -21.96542 -19.15856 -18.71510 -17.98308 -17.56695 -17.52319 -16.93798 -16.63582 -16.44641 -16.21218 -15.82646 -15.68658 -15.40527 -15.37016 -14.59438 -14.54621 -14.36268 -14.25138 -13.91361 -13.89878 -13.52344 -13.28496 -13.06320 -12.97257 -12.59379 -12.47026 -12.31416 -12.29142 -12.08237 -11.91570 -11.64035 -11.56295 -11.52895 -11.35160 -10.65953 -10.44165 -10.27836 -9.24813 -8.71052 -8.45724 -8.03369 -5.38299 -0.33006 0.14527 1.18893 1.37838 1.46619 1.57027 2.07227 2.39620 2.55909 3.09812 3.17969 3.29012 3.67008 3.68424 3.90485 4.01301 4.07895 4.26619 4.33676 4.36626 4.39623 4.40823 4.43591 4.46621 4.54884 4.56026 4.61905 4.62173 4.68303 4.72554 4.75096 4.85539 4.87562 4.96623 5.08367 5.14331 5.18667 5.30181 5.33493 5.38053 5.64477 5.79149 5.90715 6.09219 6.14946 6.32814 6.44587 6.62538 7.12769 7.79004 8.18113 9.17242 Molecular weight = 315.16amu Principal moments of inertia in cm(-1) A = 0.018546 B = 0.003751 C = 0.003707 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1509.372003 B = 7463.414765 C = 7550.685436 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.393 6.393 3 C 0.044 3.956 4 C 0.125 3.875 5 N -0.598 5.598 6 C -0.228 4.228 7 H 0.030 0.970 8 C -0.007 4.007 9 N -0.946 5.946 10 Si 0.932 3.068 11 H -0.282 1.282 12 H -0.316 1.316 13 H -0.252 1.252 14 C 0.176 3.824 15 C -0.099 4.099 16 C -0.092 4.092 17 C -0.125 4.125 18 C -0.032 4.032 19 C -0.164 4.164 20 C 0.115 3.885 21 O -0.333 6.333 22 C 0.017 3.983 23 C -0.191 4.191 24 C -0.077 4.077 25 C -0.096 4.096 26 C -0.098 4.098 27 H 0.071 0.929 28 H 0.052 0.948 29 H 0.034 0.966 30 H 0.052 0.948 31 H 0.054 0.946 32 H 0.032 0.968 33 H 0.097 0.903 34 H 0.255 0.745 35 H 0.055 0.945 36 H 0.079 0.921 37 H 0.140 0.860 38 H 0.150 0.850 39 H 0.144 0.856 40 H 0.060 0.940 41 H 0.121 0.879 42 H 0.065 0.935 43 H 0.153 0.847 44 H 0.137 0.863 45 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.073 14.318 -11.392 20.423 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.312 6.312 3 C -0.035 4.035 4 C 0.000 4.000 5 N -0.320 5.320 6 C -0.358 4.358 7 H 0.048 0.952 8 C -0.203 4.203 9 N -0.591 5.591 10 Si 0.762 3.238 11 H -0.210 1.210 12 H -0.246 1.246 13 H -0.176 1.176 14 C 0.051 3.949 15 C -0.101 4.101 16 C -0.111 4.111 17 C -0.142 4.142 18 C -0.033 4.033 19 C -0.182 4.182 20 C 0.070 3.930 21 O -0.247 6.247 22 C -0.077 4.077 23 C -0.210 4.210 24 C -0.095 4.095 25 C -0.097 4.097 26 C -0.117 4.117 27 H 0.090 0.910 28 H 0.070 0.930 29 H 0.053 0.947 30 H 0.070 0.930 31 H 0.072 0.928 32 H 0.050 0.950 33 H 0.115 0.885 34 H 0.064 0.936 35 H 0.073 0.927 36 H 0.097 0.903 37 H 0.158 0.842 38 H 0.168 0.832 39 H 0.162 0.838 40 H 0.079 0.921 41 H 0.139 0.861 42 H 0.083 0.917 43 H 0.171 0.829 44 H 0.155 0.845 45 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges -9.050 14.171 -11.308 20.264 hybrid contribution 0.283 -0.729 0.632 1.005 sum -8.767 13.443 -10.677 19.276 Atomic orbital electron populations 1.22702 0.81977 1.02018 0.99696 1.88248 1.19233 1.28570 1.95146 1.23353 0.96159 0.84498 0.99468 1.21516 0.91946 0.97856 0.88660 1.44054 1.75006 1.01906 1.11002 1.18269 1.37449 0.81414 0.98662 0.95230 1.25823 0.99470 0.94964 1.00050 1.70062 1.46032 1.10018 1.32939 0.86035 0.80064 0.77538 0.80171 1.20988 1.24566 1.17606 1.20099 0.91731 0.94608 0.88420 1.20571 0.99668 0.94690 0.95205 1.20929 0.94686 0.96239 0.99200 1.21159 0.98027 1.00202 0.94839 1.17941 0.94542 0.94666 0.96119 1.20280 0.99336 1.02296 0.96325 1.18754 0.87914 0.94290 0.92091 1.86047 1.43689 1.52415 1.42587 1.23342 1.03136 0.93827 0.87419 1.21215 0.97619 0.98711 1.03418 1.21127 0.96566 0.98478 0.93303 1.18299 0.97081 0.96676 0.97597 1.20895 0.96567 0.98566 0.95712 0.91009 0.92954 0.94704 0.92984 0.92838 0.94958 0.88538 0.93601 0.92703 0.90258 0.84243 0.83196 0.83777 0.92116 0.86088 0.91652 0.82926 0.84486 0.87483 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 1.18 11.01 113.37 1.25 2.43 16 2 O -0.39 -18.27 9.98 -148.98 -1.49 -19.76 16 3 C 0.04 1.66 6.28 71.98 0.45 2.11 16 4 C 0.13 5.08 5.19 86.38 0.45 5.52 16 5 N -0.60 -27.02 2.05 -706.35 -1.45 -28.47 16 6 C -0.23 -12.84 9.17 84.03 0.77 -12.07 16 7 H 0.03 1.90 8.06 -2.91 -0.02 1.87 16 8 C -0.01 -0.41 5.28 84.86 0.45 0.03 16 9 N -0.95 -60.70 13.97 21.65 0.30 -60.40 16 10 Si 0.93 46.54 25.26 68.60 1.73 48.27 16 11 H -0.28 -13.72 6.63 99.48 0.66 -13.06 16 12 H -0.32 -16.25 7.11 99.48 0.71 -15.54 16 13 H -0.25 -11.61 7.11 99.48 0.71 -10.91 16 14 C 0.18 6.49 5.80 85.63 0.50 6.99 16 15 C -0.10 -3.42 5.30 -20.09 -0.11 -3.53 16 16 C -0.09 -2.65 7.65 22.04 0.17 -2.48 16 17 C -0.12 -3.35 9.77 22.34 0.22 -3.13 16 18 C -0.03 -0.98 5.74 -21.30 -0.12 -1.10 16 19 C -0.16 -4.41 9.68 22.42 0.22 -4.19 16 20 C 0.11 2.95 6.63 22.27 0.15 3.10 16 21 O -0.33 -7.46 10.47 -92.26 -0.97 -8.42 16 22 C 0.02 0.23 9.80 113.37 1.11 1.34 16 23 C -0.19 -4.71 8.93 22.14 0.20 -4.52 16 24 C -0.08 -2.22 9.76 22.32 0.22 -2.00 16 25 C -0.10 -3.20 5.74 -21.28 -0.12 -3.32 16 26 C -0.10 -3.60 9.37 22.33 0.21 -3.39 16 27 H 0.07 2.58 8.14 -2.39 -0.02 2.56 16 28 H 0.05 1.55 8.14 -2.39 -0.02 1.53 16 29 H 0.03 1.18 8.14 -2.39 -0.02 1.16 16 30 H 0.05 1.65 8.14 -2.39 -0.02 1.63 16 31 H 0.05 1.90 5.91 -2.39 -0.01 1.89 16 32 H 0.03 1.50 3.29 -2.39 -0.01 1.49 16 33 H 0.10 3.05 7.84 -2.38 -0.02 3.03 16 34 H 0.26 15.70 8.31 -92.71 -0.77 14.93 16 35 H 0.05 2.11 7.97 -2.39 -0.02 2.09 16 36 H 0.08 2.39 7.80 -2.39 -0.02 2.37 16 37 H 0.14 3.26 8.05 -2.91 -0.02 3.24 16 38 H 0.15 3.03 8.06 -2.91 -0.02 3.01 16 39 H 0.14 3.29 8.06 -2.91 -0.02 3.26 16 40 H 0.06 0.76 7.63 -2.38 -0.02 0.74 16 41 H 0.12 1.03 8.14 -2.39 -0.02 1.01 16 42 H 0.06 0.74 7.63 -2.39 -0.02 0.72 16 43 H 0.15 2.77 6.21 -2.91 -0.02 2.75 16 44 H 0.14 3.58 8.06 -2.91 -0.02 3.56 16 45 H 0.11 4.16 8.06 -2.91 -0.02 4.13 16 Total: -1.00 -74.59 365.33 5.07 -69.52 By element: Atomic # 1 Polarization: 16.52 SS G_CDS: 0.93 Total: 17.46 kcal Atomic # 6 Polarization: -24.20 SS G_CDS: 6.00 Total: -18.20 kcal Atomic # 7 Polarization: -87.73 SS G_CDS: -1.14 Total: -88.87 kcal Atomic # 8 Polarization: -25.73 SS G_CDS: -2.45 Total: -28.18 kcal Atomic # 14 Polarization: 46.54 SS G_CDS: 1.73 Total: 48.27 kcal Total: -74.59 5.07 -69.52 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000343010466.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.715 kcal (2) G-P(sol) polarization free energy of solvation -74.585 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.870 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.066 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.519 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.804 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds