Wall clock time and date at job start Tue Mar 31 2020 11:02:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46903 * 1 3 3 C 1.46899 * 110.99705 * 2 1 4 4 C 1.50704 * 109.47318 * 66.04609 * 3 2 1 5 5 C 1.41381 * 126.57825 * 89.99280 * 4 3 2 6 6 C 1.34516 * 106.83955 * 179.97438 * 5 4 3 7 7 O 1.34308 * 108.41953 * 359.97438 * 6 5 4 8 8 C 1.34300 * 109.47268 * 359.77462 * 7 6 5 9 9 C 1.46896 * 110.99967 * 236.04480 * 2 1 3 10 10 C 1.50697 * 109.47382 * 293.95299 * 9 2 1 11 11 C 1.38280 * 119.97205 * 270.02476 * 10 9 2 12 12 C 1.38250 * 120.10833 * 180.02562 * 11 10 9 13 13 C 1.38159 * 120.05742 * 359.68104 * 12 11 10 14 14 C 1.38710 * 119.94311 * 0.57011 * 13 12 11 15 15 O 1.35900 * 120.05544 * 179.72143 * 14 13 12 16 16 C 1.42898 * 117.00172 * 359.72769 * 15 14 13 17 17 C 1.52997 * 109.47319 * 179.97438 * 16 15 14 18 18 C 1.50697 * 109.47466 * 180.02562 * 17 16 15 19 19 H 1.08001 * 119.99890 * 0.02562 * 18 17 16 20 20 C 1.37876 * 120.00428 * 179.97438 * 18 17 16 21 21 N 1.31517 * 120.00362 * 180.02562 * 20 18 17 22 22 Si 1.86804 * 119.99850 * 359.97438 * 20 18 17 23 23 H 1.48504 * 109.47052 * 89.99717 * 22 20 18 24 24 H 1.48495 * 109.47307 * 209.99656 * 22 20 18 25 25 H 1.48500 * 109.47143 * 330.00164 * 22 20 18 26 26 C 1.38129 * 119.97079 * 90.00085 * 10 9 2 27 27 H 1.09003 * 109.47381 * 183.95359 * 1 2 3 28 28 H 1.08999 * 109.47080 * 303.95581 * 1 2 3 29 29 H 1.09004 * 109.46886 * 63.95499 * 1 2 3 30 30 H 1.09004 * 109.47083 * 186.04445 * 3 2 1 31 31 H 1.08994 * 109.47556 * 306.04385 * 3 2 1 32 32 H 1.08000 * 126.58006 * 0.02562 * 5 4 3 33 33 H 1.07994 * 125.79210 * 179.97438 * 6 5 4 34 34 H 1.08011 * 125.78434 * 180.23612 * 8 7 6 35 35 H 1.09005 * 109.46944 * 173.95312 * 9 2 1 36 36 H 1.09002 * 109.47398 * 53.95754 * 9 2 1 37 37 H 1.08000 * 119.95034 * 0.02562 * 11 10 9 38 38 H 1.08006 * 119.97154 * 179.97438 * 12 11 10 39 39 H 1.08006 * 120.03137 * 180.29323 * 13 12 11 40 40 H 1.09002 * 109.47259 * 300.00149 * 16 15 14 41 41 H 1.09001 * 109.47074 * 60.00171 * 16 15 14 42 42 H 1.09002 * 109.47153 * 300.00307 * 17 16 15 43 43 H 1.08998 * 109.47533 * 59.99936 * 17 16 15 44 44 H 0.96994 * 119.99814 * 180.02562 * 21 20 18 45 45 H 1.07998 * 120.02418 * 0.02613 * 26 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3715 0.0000 4 6 1.6369 2.0472 1.2985 5 6 2.4050 2.0531 2.4854 6 6 1.7165 2.7701 3.3916 7 8 0.5787 3.1968 2.8195 8 6 0.5277 2.7658 1.5485 9 6 1.9955 -0.7660 -1.1375 10 6 1.6370 -2.2204 -0.9728 11 6 2.4944 -3.0713 -0.2998 12 6 2.1686 -4.4062 -0.1475 13 6 0.9819 -4.8919 -0.6619 14 6 0.1226 -4.0415 -1.3420 15 8 -1.0426 -4.5181 -1.8538 16 6 -1.3165 -5.9071 -1.6597 17 6 -2.6617 -6.2561 -2.2994 18 6 -2.9508 -7.7208 -2.0942 19 1 -2.2457 -8.3407 -1.5604 20 6 -4.1159 -8.2692 -2.5869 21 7 -4.3684 -9.5474 -2.4073 22 14 -5.3365 -7.1965 -3.5083 23 1 -5.0109 -7.2086 -4.9571 24 1 -6.7101 -7.7230 -3.3052 25 1 -5.2587 -5.8052 -2.9951 26 6 0.4520 -2.7023 -1.4938 27 1 -0.3634 -1.0252 0.0709 28 1 -0.3633 0.5740 0.8524 29 1 -0.3633 0.4512 -0.9233 30 1 3.0797 1.3445 -0.1082 31 1 1.5611 1.9274 -0.8309 32 1 3.3615 1.5745 2.6354 33 1 2.0260 2.9689 4.4070 34 1 -0.2701 2.9608 0.8471 35 1 3.0798 -0.6611 -1.1756 36 1 1.5612 -0.3873 -2.0628 37 1 3.4202 -2.6925 0.1075 38 1 2.8402 -5.0689 0.3782 39 1 0.7256 -5.9338 -0.5386 40 1 -0.5285 -6.5010 -2.1229 41 1 -1.3551 -6.1241 -0.5922 42 1 -3.4495 -5.6622 -1.8358 43 1 -2.6237 -6.0390 -3.3669 44 1 -5.1879 -9.9332 -2.7542 45 1 -0.2173 -2.0373 -2.0194 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000352654180.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:02:40 Heat of formation + Delta-G solvation = 4.844518 kcal Electronic energy + Delta-G solvation = -24791.700838 eV Core-core repulsion = 21162.302671 eV Total energy + Delta-G solvation = -3629.398168 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 315.162 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -42.82779 -39.96641 -38.27089 -36.77932 -33.66486 -33.33861 -31.45873 -31.08480 -29.87491 -29.45635 -27.71526 -26.67622 -25.17387 -22.96387 -22.33437 -21.82298 -21.19671 -20.49935 -20.10279 -17.84270 -17.52070 -16.64395 -16.45863 -15.93314 -15.68814 -15.66158 -15.35669 -15.25113 -15.05593 -14.54717 -14.15930 -13.79504 -13.31476 -13.08558 -13.04620 -12.92538 -12.82351 -12.49706 -12.39848 -12.00214 -11.88112 -11.72056 -11.49491 -11.39742 -11.37481 -10.82022 -10.64220 -10.19253 -10.02172 -9.99484 -9.82478 -9.35638 -8.95119 -8.73870 -8.63514 -8.48246 -7.88949 -6.14616 -4.15555 1.35799 1.50716 1.66234 2.29586 2.86448 3.27383 3.34696 3.40041 3.67416 3.77384 4.13998 4.37883 4.44236 4.57304 4.65469 4.72973 4.92089 5.08279 5.09381 5.13831 5.19397 5.27757 5.33423 5.34723 5.43480 5.47031 5.50726 5.61295 5.73908 5.78590 5.86150 5.89839 5.91424 5.95738 6.13773 6.19271 6.40900 6.50229 6.63041 6.66818 6.76387 6.77365 6.85421 6.91102 7.10632 7.21817 7.61411 7.91639 8.37638 8.86090 9.45599 10.97875 Molecular weight = 315.16amu Principal moments of inertia in cm(-1) A = 0.018848 B = 0.002241 C = 0.002109 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1485.206750 B =12489.344535 C =13274.562205 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.016 3.984 2 N -0.530 5.530 3 C 0.123 3.877 4 C -0.168 4.168 5 C -0.194 4.194 6 C -0.047 4.047 7 O -0.178 6.178 8 C -0.038 4.038 9 C 0.097 3.903 10 C -0.045 4.045 11 C -0.147 4.147 12 C -0.081 4.081 13 C -0.209 4.209 14 C 0.143 3.857 15 O -0.321 6.321 16 C 0.073 3.927 17 C -0.009 4.009 18 C -0.527 4.527 19 H 0.074 0.926 20 C 0.072 3.928 21 N -0.897 5.897 22 Si 0.881 3.119 23 H -0.275 1.275 24 H -0.286 1.286 25 H -0.263 1.263 26 C -0.155 4.155 27 H 0.078 0.922 28 H 0.068 0.932 29 H 0.025 0.975 30 H 0.084 0.916 31 H 0.042 0.958 32 H 0.147 0.853 33 H 0.201 0.799 34 H 0.198 0.802 35 H 0.084 0.916 36 H 0.044 0.956 37 H 0.118 0.882 38 H 0.121 0.879 39 H 0.130 0.870 40 H 0.056 0.944 41 H 0.057 0.943 42 H 0.027 0.973 43 H 0.023 0.977 44 H 0.266 0.734 45 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.910 25.193 7.274 30.671 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 N -0.254 5.254 3 C -0.005 4.005 4 C -0.170 4.170 5 C -0.213 4.213 6 C -0.115 4.115 7 O -0.074 6.074 8 C -0.107 4.107 9 C -0.030 4.030 10 C -0.046 4.046 11 C -0.166 4.166 12 C -0.099 4.099 13 C -0.228 4.228 14 C 0.096 3.904 15 O -0.234 6.234 16 C -0.001 4.001 17 C -0.046 4.046 18 C -0.565 4.565 19 H 0.093 0.907 20 C -0.131 4.131 21 N -0.535 5.535 22 Si 0.708 3.292 23 H -0.201 1.201 24 H -0.212 1.212 25 H -0.188 1.188 26 C -0.175 4.175 27 H 0.097 0.903 28 H 0.087 0.913 29 H 0.044 0.956 30 H 0.102 0.898 31 H 0.060 0.940 32 H 0.165 0.835 33 H 0.217 0.783 34 H 0.214 0.786 35 H 0.102 0.898 36 H 0.062 0.938 37 H 0.136 0.864 38 H 0.139 0.861 39 H 0.148 0.852 40 H 0.075 0.925 41 H 0.075 0.925 42 H 0.046 0.954 43 H 0.041 0.959 44 H 0.076 0.924 45 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges 15.551 25.084 7.691 30.499 hybrid contribution -0.756 0.294 -1.120 1.382 sum 14.796 25.378 6.571 30.102 Atomic orbital electron populations 1.22548 0.86986 1.03449 1.00219 1.61961 1.08510 1.12252 1.42688 1.20399 1.00369 0.87646 0.92052 1.20272 0.96402 1.02933 0.97391 1.21702 1.02477 1.03934 0.93194 1.24018 0.85937 1.01817 0.99705 1.84072 1.38105 1.61159 1.24038 1.23877 1.00779 1.01501 0.84531 1.21025 1.00284 0.90049 0.91607 1.19315 0.93746 0.94390 0.97150 1.20757 1.00458 0.93322 1.02054 1.20907 0.95750 0.95380 0.97847 1.21409 0.96592 1.00722 1.04056 1.19090 0.86125 0.92869 0.92296 1.86111 1.34853 1.29421 1.73050 1.23069 1.00078 0.76390 1.00580 1.19581 0.90908 0.97747 0.96380 1.20838 1.06354 0.91680 1.37580 0.90745 1.24939 0.97714 0.94918 0.95481 1.69893 1.26040 1.11651 1.45957 0.86754 0.80493 0.81441 0.80551 1.20069 1.21167 1.18769 1.20255 0.98137 0.93223 1.05840 0.90317 0.91343 0.95618 0.89784 0.93990 0.83477 0.78265 0.78550 0.89773 0.93762 0.86359 0.86091 0.85170 0.92543 0.92519 0.95446 0.95874 0.92444 0.85897 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.16 8.91 60.07 0.54 0.70 16 2 N -0.53 -5.24 4.74 -245.82 -1.17 -6.41 16 3 C 0.12 0.99 5.48 -4.97 -0.03 0.96 16 4 C -0.17 -1.47 5.04 -104.74 -0.53 -2.00 16 5 C -0.19 -1.61 10.87 -39.70 -0.43 -2.04 16 6 C -0.05 -0.36 12.09 29.42 0.36 0.00 16 7 O -0.18 -1.62 10.65 5.70 0.06 -1.56 16 8 C -0.04 -0.31 10.58 29.41 0.31 0.00 16 9 C 0.10 0.94 5.12 -4.98 -0.03 0.91 16 10 C -0.05 -0.56 4.88 -104.65 -0.51 -1.07 16 11 C -0.15 -1.78 9.70 -39.56 -0.38 -2.16 16 12 C -0.08 -1.05 10.04 -39.61 -0.40 -1.44 16 13 C -0.21 -3.22 9.04 -39.44 -0.36 -3.57 16 14 C 0.14 2.40 6.69 -39.22 -0.26 2.14 16 15 O -0.32 -6.29 10.14 -19.43 -0.20 -6.49 16 16 C 0.07 1.51 4.68 37.16 0.17 1.68 16 17 C -0.01 -0.21 4.41 -27.89 -0.12 -0.33 16 18 C -0.53 -14.85 9.66 -34.44 -0.33 -15.19 16 19 H 0.07 2.22 7.99 -52.49 -0.42 1.80 16 20 C 0.07 2.07 5.47 -17.82 -0.10 1.97 16 21 N -0.90 -27.26 13.96 55.43 0.77 -26.49 16 22 Si 0.88 21.59 27.47 -169.99 -4.67 16.92 16 23 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 24 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 25 H -0.26 -6.27 6.54 56.52 0.37 -5.90 16 26 C -0.16 -2.24 7.90 -39.43 -0.31 -2.55 16 27 H 0.08 0.95 6.17 -51.93 -0.32 0.63 16 28 H 0.07 0.67 6.13 -51.93 -0.32 0.36 16 29 H 0.03 0.23 8.14 -51.93 -0.42 -0.19 16 30 H 0.08 0.60 7.93 -51.93 -0.41 0.19 16 31 H 0.04 0.30 8.12 -51.93 -0.42 -0.12 16 32 H 0.15 1.04 8.06 -52.49 -0.42 0.61 16 33 H 0.20 0.80 8.06 -52.49 -0.42 0.38 16 34 H 0.20 1.11 8.06 -52.48 -0.42 0.69 16 35 H 0.08 0.68 7.87 -51.93 -0.41 0.28 16 36 H 0.04 0.41 8.06 -51.93 -0.42 -0.01 16 37 H 0.12 1.19 8.06 -52.49 -0.42 0.76 16 38 H 0.12 1.28 8.06 -52.48 -0.42 0.86 16 39 H 0.13 2.00 6.30 -52.48 -0.33 1.67 16 40 H 0.06 1.13 7.67 -51.93 -0.40 0.73 16 41 H 0.06 1.14 7.65 -51.93 -0.40 0.74 16 42 H 0.03 0.67 7.20 -51.93 -0.37 0.30 16 43 H 0.02 0.56 7.57 -51.93 -0.39 0.16 16 44 H 0.27 7.53 8.31 -40.82 -0.34 7.19 16 45 H 0.12 1.67 8.03 -52.49 -0.42 1.25 16 LS Contribution 371.71 15.07 5.60 5.60 Total: -1.00 -32.00 371.71 -8.75 -40.74 By element: Atomic # 1 Polarization: 6.41 SS G_CDS: -6.74 Total: -0.33 kcal Atomic # 6 Polarization: -19.58 SS G_CDS: -2.41 Total: -21.99 kcal Atomic # 7 Polarization: -32.50 SS G_CDS: -0.39 Total: -32.90 kcal Atomic # 8 Polarization: -7.91 SS G_CDS: -0.14 Total: -8.05 kcal Atomic # 14 Polarization: 21.59 SS G_CDS: -4.67 Total: 16.92 kcal Total LS contribution 5.60 Total: 5.60 kcal Total: -32.00 -8.75 -40.74 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000352654180.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.587 kcal (2) G-P(sol) polarization free energy of solvation -31.996 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.591 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.746 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.742 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.845 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds