Wall clock time and date at job start Tue Mar 31 2020 11:02:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46903 * 1 3 3 C 1.46899 * 110.99705 * 2 1 4 4 C 1.50704 * 109.47318 * 66.04609 * 3 2 1 5 5 C 1.41381 * 126.57825 * 89.99280 * 4 3 2 6 6 C 1.34516 * 106.83955 * 179.97438 * 5 4 3 7 7 O 1.34308 * 108.41953 * 359.97438 * 6 5 4 8 8 C 1.34300 * 109.47268 * 359.77462 * 7 6 5 9 9 C 1.46896 * 110.99967 * 236.04480 * 2 1 3 10 10 C 1.50697 * 109.47382 * 293.95299 * 9 2 1 11 11 C 1.38280 * 119.97205 * 270.02476 * 10 9 2 12 12 C 1.38250 * 120.10833 * 180.02562 * 11 10 9 13 13 C 1.38159 * 120.05742 * 359.68104 * 12 11 10 14 14 C 1.38710 * 119.94311 * 0.57011 * 13 12 11 15 15 O 1.35900 * 120.05544 * 179.72143 * 14 13 12 16 16 C 1.42898 * 117.00172 * 359.72769 * 15 14 13 17 17 C 1.52997 * 109.47319 * 179.97438 * 16 15 14 18 18 C 1.50697 * 109.47466 * 180.02562 * 17 16 15 19 19 H 1.08001 * 119.99890 * 0.02562 * 18 17 16 20 20 C 1.37876 * 120.00428 * 179.97438 * 18 17 16 21 21 N 1.31517 * 120.00362 * 180.02562 * 20 18 17 22 22 Si 1.86804 * 119.99850 * 359.97438 * 20 18 17 23 23 H 1.48504 * 109.47052 * 89.99717 * 22 20 18 24 24 H 1.48495 * 109.47307 * 209.99656 * 22 20 18 25 25 H 1.48500 * 109.47143 * 330.00164 * 22 20 18 26 26 C 1.38129 * 119.97079 * 90.00085 * 10 9 2 27 27 H 1.09003 * 109.47381 * 183.95359 * 1 2 3 28 28 H 1.08999 * 109.47080 * 303.95581 * 1 2 3 29 29 H 1.09004 * 109.46886 * 63.95499 * 1 2 3 30 30 H 1.09004 * 109.47083 * 186.04445 * 3 2 1 31 31 H 1.08994 * 109.47556 * 306.04385 * 3 2 1 32 32 H 1.08000 * 126.58006 * 0.02562 * 5 4 3 33 33 H 1.07994 * 125.79210 * 179.97438 * 6 5 4 34 34 H 1.08011 * 125.78434 * 180.23612 * 8 7 6 35 35 H 1.09005 * 109.46944 * 173.95312 * 9 2 1 36 36 H 1.09002 * 109.47398 * 53.95754 * 9 2 1 37 37 H 1.08000 * 119.95034 * 0.02562 * 11 10 9 38 38 H 1.08006 * 119.97154 * 179.97438 * 12 11 10 39 39 H 1.08006 * 120.03137 * 180.29323 * 13 12 11 40 40 H 1.09002 * 109.47259 * 300.00149 * 16 15 14 41 41 H 1.09001 * 109.47074 * 60.00171 * 16 15 14 42 42 H 1.09002 * 109.47153 * 300.00307 * 17 16 15 43 43 H 1.08998 * 109.47533 * 59.99936 * 17 16 15 44 44 H 0.96994 * 119.99814 * 180.02562 * 21 20 18 45 45 H 1.07998 * 120.02418 * 0.02613 * 26 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3715 0.0000 4 6 1.6369 2.0472 1.2985 5 6 2.4050 2.0531 2.4854 6 6 1.7165 2.7701 3.3916 7 8 0.5787 3.1968 2.8195 8 6 0.5277 2.7658 1.5485 9 6 1.9955 -0.7660 -1.1375 10 6 1.6370 -2.2204 -0.9728 11 6 2.4944 -3.0713 -0.2998 12 6 2.1686 -4.4062 -0.1475 13 6 0.9819 -4.8919 -0.6619 14 6 0.1226 -4.0415 -1.3420 15 8 -1.0426 -4.5181 -1.8538 16 6 -1.3165 -5.9071 -1.6597 17 6 -2.6617 -6.2561 -2.2994 18 6 -2.9508 -7.7208 -2.0942 19 1 -2.2457 -8.3407 -1.5604 20 6 -4.1159 -8.2692 -2.5869 21 7 -4.3684 -9.5474 -2.4073 22 14 -5.3365 -7.1965 -3.5083 23 1 -5.0109 -7.2086 -4.9571 24 1 -6.7101 -7.7230 -3.3052 25 1 -5.2587 -5.8052 -2.9951 26 6 0.4520 -2.7023 -1.4938 27 1 -0.3634 -1.0252 0.0709 28 1 -0.3633 0.5740 0.8524 29 1 -0.3633 0.4512 -0.9233 30 1 3.0797 1.3445 -0.1082 31 1 1.5611 1.9274 -0.8309 32 1 3.3615 1.5745 2.6354 33 1 2.0260 2.9689 4.4070 34 1 -0.2701 2.9608 0.8471 35 1 3.0798 -0.6611 -1.1756 36 1 1.5612 -0.3873 -2.0628 37 1 3.4202 -2.6925 0.1075 38 1 2.8402 -5.0689 0.3782 39 1 0.7256 -5.9338 -0.5386 40 1 -0.5285 -6.5010 -2.1229 41 1 -1.3551 -6.1241 -0.5922 42 1 -3.4495 -5.6622 -1.8358 43 1 -2.6237 -6.0390 -3.3669 44 1 -5.1879 -9.9332 -2.7542 45 1 -0.2173 -2.0373 -2.0194 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000352654180.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:02:39 Heat of formation + Delta-G solvation = -14.144745 kcal Electronic energy + Delta-G solvation = -24792.524275 eV Core-core repulsion = 21162.302671 eV Total energy + Delta-G solvation = -3630.221604 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 315.162 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -43.41062 -41.14603 -39.30611 -37.79554 -35.43508 -34.31866 -32.94233 -32.34095 -30.83108 -30.44364 -28.46170 -27.59599 -26.91421 -23.96630 -23.41801 -22.76355 -22.36691 -21.42898 -21.08544 -19.31423 -18.45230 -18.17311 -17.16125 -17.01530 -16.92330 -16.88349 -16.32280 -16.28821 -15.98649 -15.82292 -15.27642 -14.90275 -14.62703 -14.41867 -14.28747 -13.87047 -13.80979 -13.60481 -13.28978 -13.09897 -13.02700 -12.81260 -12.61729 -12.50548 -12.41539 -12.25093 -12.09026 -11.91519 -11.73170 -11.56556 -11.41827 -10.83276 -10.63467 -9.85027 -9.44945 -9.20707 -9.09253 -8.36522 -6.43451 0.33157 0.54825 0.90628 1.34562 1.36125 1.48881 1.69574 2.31666 2.32214 2.35215 2.75727 2.98216 3.31231 3.78041 3.90016 3.95385 3.99498 4.12846 4.15498 4.19504 4.19959 4.32243 4.40521 4.45484 4.50526 4.55563 4.64158 4.66248 4.68772 4.76329 4.80962 4.87740 5.06679 5.07660 5.13339 5.18220 5.27715 5.33330 5.41722 5.48031 5.54837 5.63460 5.65620 5.89058 6.03277 6.11278 6.14536 6.25914 6.52632 6.62038 7.21674 8.79152 Molecular weight = 315.16amu Principal moments of inertia in cm(-1) A = 0.018848 B = 0.002241 C = 0.002109 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1485.206750 B =12489.344535 C =13274.562205 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.020 3.980 2 N -0.539 5.539 3 C 0.126 3.874 4 C -0.183 4.183 5 C -0.212 4.212 6 C -0.050 4.050 7 O -0.194 6.194 8 C -0.048 4.048 9 C 0.100 3.900 10 C -0.041 4.041 11 C -0.139 4.139 12 C -0.082 4.082 13 C -0.225 4.225 14 C 0.106 3.894 15 O -0.337 6.337 16 C 0.088 3.912 17 C -0.006 4.006 18 C -0.537 4.537 19 H 0.041 0.959 20 C 0.013 3.987 21 N -0.942 5.942 22 Si 0.950 3.050 23 H -0.264 1.264 24 H -0.278 1.278 25 H -0.251 1.251 26 C -0.157 4.157 27 H 0.055 0.945 28 H 0.069 0.931 29 H 0.035 0.965 30 H 0.096 0.904 31 H 0.052 0.948 32 H 0.157 0.843 33 H 0.229 0.771 34 H 0.215 0.785 35 H 0.107 0.893 36 H 0.051 0.949 37 H 0.148 0.852 38 H 0.146 0.854 39 H 0.121 0.879 40 H 0.057 0.943 41 H 0.055 0.945 42 H 0.027 0.973 43 H 0.027 0.973 44 H 0.270 0.730 45 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.191 27.885 7.205 33.541 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 N -0.264 5.264 3 C -0.001 4.001 4 C -0.184 4.184 5 C -0.231 4.231 6 C -0.117 4.117 7 O -0.090 6.090 8 C -0.116 4.116 9 C -0.027 4.027 10 C -0.042 4.042 11 C -0.158 4.158 12 C -0.100 4.100 13 C -0.244 4.244 14 C 0.061 3.939 15 O -0.251 6.251 16 C 0.014 3.986 17 C -0.043 4.043 18 C -0.575 4.575 19 H 0.060 0.940 20 C -0.185 4.185 21 N -0.581 5.581 22 Si 0.772 3.228 23 H -0.189 1.189 24 H -0.204 1.204 25 H -0.175 1.175 26 C -0.177 4.177 27 H 0.074 0.926 28 H 0.087 0.913 29 H 0.053 0.947 30 H 0.114 0.886 31 H 0.070 0.930 32 H 0.175 0.825 33 H 0.246 0.754 34 H 0.232 0.768 35 H 0.125 0.875 36 H 0.069 0.931 37 H 0.166 0.834 38 H 0.164 0.836 39 H 0.139 0.861 40 H 0.075 0.925 41 H 0.073 0.927 42 H 0.045 0.955 43 H 0.045 0.955 44 H 0.079 0.921 45 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges 16.859 27.795 7.629 33.391 hybrid contribution -0.996 -0.500 -0.993 1.493 sum 15.863 27.295 6.636 32.259 Atomic orbital electron populations 1.22456 0.87599 1.02010 1.00768 1.61923 1.08092 1.13518 1.42818 1.20427 1.01027 0.86558 0.92080 1.20482 0.96761 1.03321 0.97885 1.21968 1.03147 1.04590 0.93433 1.24645 0.85215 1.01027 1.00810 1.84073 1.38848 1.61561 1.24531 1.24297 1.01319 1.01391 0.84588 1.21067 1.01664 0.88104 0.91867 1.19650 0.92628 0.96048 0.95826 1.21159 1.01158 0.92771 1.00664 1.21221 0.95033 0.96411 0.97293 1.21483 0.97692 1.00332 1.04860 1.19415 0.85912 0.94168 0.94380 1.86019 1.36793 1.28083 1.74233 1.22638 0.98267 0.77710 1.00032 1.19437 0.92893 0.95132 0.96841 1.21102 1.05899 0.93517 1.36997 0.94044 1.25893 0.99874 0.96286 0.96484 1.70025 1.27045 1.13631 1.47407 0.85667 0.77804 0.79860 0.79430 1.18883 1.20389 1.17482 1.20415 0.99066 0.92206 1.05976 0.92613 0.91272 0.94691 0.88596 0.92990 0.82542 0.75447 0.76817 0.87518 0.93083 0.83439 0.83611 0.86090 0.92504 0.92684 0.95494 0.95485 0.92068 0.85624 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.38 8.91 127.69 1.14 1.51 16 2 N -0.54 -9.29 4.74 -931.64 -4.42 -13.71 16 3 C 0.13 1.69 5.48 85.56 0.47 2.16 16 4 C -0.18 -2.84 5.04 -19.94 -0.10 -2.94 16 5 C -0.21 -3.14 10.87 22.19 0.24 -2.90 16 6 C -0.05 -0.67 12.09 66.97 0.81 0.14 16 7 O -0.19 -3.28 10.65 -2.51 -0.03 -3.31 16 8 C -0.05 -0.71 10.58 66.97 0.71 -0.01 16 9 C 0.10 1.62 5.12 85.56 0.44 2.06 16 10 C -0.04 -0.91 4.88 -19.88 -0.10 -1.01 16 11 C -0.14 -2.96 9.70 22.28 0.22 -2.74 16 12 C -0.08 -1.97 10.04 22.25 0.22 -1.75 16 13 C -0.22 -6.92 9.04 22.36 0.20 -6.72 16 14 C 0.11 3.60 6.69 22.50 0.15 3.75 16 15 O -0.34 -13.41 10.14 -92.43 -0.94 -14.35 16 16 C 0.09 3.74 4.68 71.98 0.34 4.08 16 17 C -0.01 -0.27 4.41 29.85 0.13 -0.14 16 18 C -0.54 -31.16 9.66 25.60 0.25 -30.91 16 19 H 0.04 2.59 7.99 -2.91 -0.02 2.57 16 20 C 0.01 0.75 5.47 84.65 0.46 1.21 16 21 N -0.94 -58.49 13.96 21.45 0.30 -58.19 16 22 Si 0.95 44.46 27.47 68.60 1.88 46.34 16 23 H -0.26 -11.84 7.11 99.48 0.71 -11.13 16 24 H -0.28 -12.62 7.11 99.48 0.71 -11.92 16 25 H -0.25 -11.18 6.54 99.48 0.65 -10.53 16 26 C -0.16 -4.41 7.90 22.37 0.18 -4.23 16 27 H 0.06 1.31 6.17 -2.39 -0.01 1.30 16 28 H 0.07 1.28 6.13 -2.39 -0.01 1.26 16 29 H 0.03 0.58 8.14 -2.39 -0.02 0.56 16 30 H 0.10 1.06 7.93 -2.39 -0.02 1.04 16 31 H 0.05 0.60 8.12 -2.39 -0.02 0.58 16 32 H 0.16 1.88 8.06 -2.91 -0.02 1.86 16 33 H 0.23 1.32 8.06 -2.91 -0.02 1.30 16 34 H 0.22 2.09 8.06 -2.90 -0.02 2.06 16 35 H 0.11 1.28 7.87 -2.38 -0.02 1.27 16 36 H 0.05 0.78 8.06 -2.39 -0.02 0.76 16 37 H 0.15 2.31 8.06 -2.91 -0.02 2.28 16 38 H 0.15 2.72 8.06 -2.91 -0.02 2.70 16 39 H 0.12 3.84 6.30 -2.91 -0.02 3.82 16 40 H 0.06 2.36 7.67 -2.39 -0.02 2.34 16 41 H 0.05 2.30 7.65 -2.39 -0.02 2.28 16 42 H 0.03 1.31 7.20 -2.39 -0.02 1.29 16 43 H 0.03 1.29 7.57 -2.39 -0.02 1.28 16 44 H 0.27 15.57 8.31 -92.71 -0.77 14.80 16 45 H 0.13 3.35 8.03 -2.91 -0.02 3.32 16 Total: -1.00 -70.00 371.71 3.47 -66.53 By element: Atomic # 1 Polarization: 14.19 SS G_CDS: 0.92 Total: 15.11 kcal Atomic # 6 Polarization: -44.18 SS G_CDS: 5.75 Total: -38.43 kcal Atomic # 7 Polarization: -67.78 SS G_CDS: -4.12 Total: -71.90 kcal Atomic # 8 Polarization: -16.69 SS G_CDS: -0.96 Total: -17.65 kcal Atomic # 14 Polarization: 44.46 SS G_CDS: 1.88 Total: 46.34 kcal Total: -70.00 3.47 -66.53 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000352654180.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.388 kcal (2) G-P(sol) polarization free energy of solvation -70.002 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.614 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.469 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.533 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.145 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds