Wall clock time and date at job start Tue Mar 31 2020 10:43:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 N 1.46497 * 109.47173 * 2 1 4 4 C 1.46505 * 120.00151 * 274.09536 * 3 2 1 5 5 C 1.50699 * 109.47387 * 270.00081 * 4 3 2 6 6 H 1.08005 * 119.99694 * 359.97438 * 5 4 3 7 7 C 1.37874 * 120.00095 * 180.02562 * 5 4 3 8 8 N 1.31509 * 120.00045 * 359.97438 * 7 5 4 9 9 Si 1.86796 * 120.00000 * 180.02562 * 7 5 4 10 10 H 1.48508 * 109.47215 * 59.99425 * 9 7 5 11 11 H 1.48500 * 109.47313 * 179.97438 * 9 7 5 12 12 H 1.48507 * 109.46985 * 299.99866 * 9 7 5 13 13 C 1.34780 * 120.00098 * 94.09718 * 3 2 1 14 14 O 1.21597 * 120.00110 * 184.98898 * 13 3 2 15 15 C 1.47426 * 119.99709 * 4.98365 * 13 3 2 16 16 C 1.41291 * 126.41681 * 264.35877 * 15 13 3 17 17 C 1.50699 * 125.98637 * 359.94694 * 16 15 13 18 18 N 1.30449 * 108.02354 * 179.97438 * 16 15 13 19 19 N 1.39931 * 108.89444 * 359.74473 * 18 16 15 20 20 C 1.46507 * 125.75302 * 180.29428 * 19 18 16 21 21 C 1.52991 * 109.47270 * 270.15862 * 20 19 18 22 22 F 1.39905 * 109.47414 * 175.00122 * 21 20 19 23 23 F 1.39904 * 109.46986 * 294.99478 * 21 20 19 24 24 C 1.34255 * 108.49435 * 0.42894 * 19 18 16 25 25 C 1.50700 * 126.29299 * 179.84708 * 24 19 18 26 26 H 1.09000 * 109.46765 * 300.58400 * 1 2 3 27 27 H 1.08997 * 109.46903 * 60.58488 * 1 2 3 28 28 H 1.09003 * 109.46986 * 180.58238 * 1 2 3 29 29 H 1.09006 * 109.47232 * 240.00446 * 2 1 3 30 30 H 1.08999 * 109.46901 * 120.00311 * 2 1 3 31 31 H 1.09000 * 109.47113 * 30.00243 * 4 3 2 32 32 H 1.09002 * 109.47235 * 149.99876 * 4 3 2 33 33 H 0.97000 * 120.00462 * 180.02562 * 8 7 5 34 34 H 1.09006 * 109.47523 * 90.00011 * 17 16 15 35 35 H 1.09006 * 109.47186 * 209.99789 * 17 16 15 36 36 H 1.08998 * 109.47490 * 329.99768 * 17 16 15 37 37 H 1.09008 * 109.46737 * 30.15299 * 20 19 18 38 38 H 1.08996 * 109.46927 * 150.14834 * 20 19 18 39 39 H 1.08994 * 109.47808 * 54.99801 * 21 20 19 40 40 H 1.09004 * 109.47247 * 270.10117 * 25 24 19 41 41 H 1.08994 * 109.47734 * 150.09496 * 25 24 19 42 42 H 1.09004 * 109.47330 * 30.09249 * 25 24 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.1771 2.1020 -1.2655 5 6 3.5677 1.8768 -1.8010 6 1 4.2637 1.2589 -1.2531 7 6 3.9516 2.4605 -2.9896 8 7 3.1042 3.2133 -3.6564 9 14 5.6750 2.1807 -3.6536 10 1 5.8881 0.7288 -3.8815 11 1 5.8360 2.9115 -4.9363 12 1 6.6709 2.6789 -2.6711 13 6 2.3216 1.9888 1.1642 14 8 2.6398 3.1623 1.1728 15 6 2.2674 1.2305 2.4274 16 6 1.1829 1.1837 3.3318 17 6 -0.1311 1.9050 3.1767 18 7 1.5187 0.4073 4.3248 19 7 2.8126 -0.0774 4.1037 20 6 3.5490 -0.9857 4.9863 21 6 4.3473 -0.1706 6.0056 22 9 4.9593 -1.0362 6.9186 23 9 5.3271 0.5753 5.3416 24 6 3.2666 0.4326 2.9477 25 6 4.6164 0.1760 2.3286 26 1 -0.3633 0.5229 0.8847 27 1 -0.3633 0.5047 -0.8952 28 1 -0.3633 -1.0276 0.0104 29 1 1.8934 -0.5138 -0.8901 30 1 1.8933 -0.5139 0.8900 31 1 1.4464 1.7356 -1.9865 32 1 2.0201 3.1677 -1.0988 33 1 3.3741 3.6237 -4.4928 34 1 -0.8328 1.2697 2.6361 35 1 -0.5363 2.1378 4.1615 36 1 0.0251 2.8292 2.6204 37 1 2.8455 -1.6332 5.5099 38 1 4.2313 -1.5947 4.3934 39 1 3.6761 0.5034 6.5378 40 1 5.3282 0.9193 2.6880 41 1 4.5373 0.2434 1.2436 42 1 4.9602 -0.8203 2.6066 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000354818030.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:43:08 Heat of formation + Delta-G solvation = -68.937499 kcal Electronic energy + Delta-G solvation = -27485.441855 eV Core-core repulsion = 23330.907481 eV Total energy + Delta-G solvation = -4154.534375 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 315.150 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -49.37461 -47.37619 -41.47835 -38.55264 -35.15830 -34.76854 -32.80430 -32.25312 -30.49417 -29.97312 -28.16204 -26.99578 -26.58401 -23.91975 -23.00702 -22.82239 -20.89083 -19.57673 -18.47092 -17.99226 -17.65135 -17.18087 -16.60855 -16.34347 -15.64082 -15.57643 -14.78462 -14.38973 -14.28480 -14.13598 -13.76376 -13.71538 -13.62896 -13.41607 -13.22625 -13.07593 -12.84908 -12.73240 -12.43522 -12.29734 -12.16071 -11.98205 -11.79990 -11.58750 -11.47711 -11.19011 -10.89086 -10.68250 -10.63465 -10.52583 -10.11925 -9.63909 -9.22288 -9.02835 -8.44070 -8.31822 -7.60945 -6.03095 -4.08021 1.61398 2.04025 2.58421 3.29079 3.31505 3.35843 3.36752 3.41772 3.79410 3.88631 4.08956 4.27574 4.44496 4.54037 4.56983 4.81569 4.90065 5.01296 5.27693 5.33403 5.36831 5.46438 5.58526 5.61322 5.72363 5.85314 5.87516 5.92109 5.95568 6.08544 6.16299 6.30785 6.51713 6.61429 6.78177 7.13529 7.48619 7.59095 7.61076 7.93811 8.24938 8.47973 8.90952 9.15043 9.57134 11.04866 Molecular weight = 315.15amu Principal moments of inertia in cm(-1) A = 0.014696 B = 0.004263 C = 0.003614 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1904.775166 B = 6566.966311 C = 7745.217243 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.112 3.888 3 N -0.588 5.588 4 C 0.246 3.754 5 C -0.526 4.526 6 H 0.056 0.944 7 C 0.063 3.937 8 N -0.894 5.894 9 Si 0.896 3.104 10 H -0.277 1.277 11 H -0.286 1.286 12 H -0.276 1.276 13 C 0.586 3.414 14 O -0.536 6.536 15 C -0.256 4.256 16 C 0.121 3.879 17 C -0.078 4.078 18 N -0.304 5.304 19 N -0.375 5.375 20 C 0.091 3.909 21 C 0.248 3.752 22 F -0.197 7.197 23 F -0.195 7.195 24 C 0.130 3.870 25 C -0.100 4.100 26 H 0.053 0.947 27 H 0.061 0.939 28 H 0.056 0.944 29 H 0.077 0.923 30 H 0.062 0.938 31 H 0.033 0.967 32 H 0.045 0.955 33 H 0.264 0.736 34 H 0.082 0.918 35 H 0.075 0.925 36 H 0.084 0.916 37 H 0.128 0.872 38 H 0.117 0.883 39 H 0.118 0.882 40 H 0.090 0.910 41 H 0.097 0.903 42 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.762 -11.206 16.755 20.345 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C -0.013 4.013 3 N -0.319 5.319 4 C 0.127 3.873 5 C -0.565 4.565 6 H 0.074 0.926 7 C -0.140 4.140 8 N -0.533 5.533 9 Si 0.724 3.276 10 H -0.203 1.203 11 H -0.212 1.212 12 H -0.202 1.202 13 C 0.371 3.629 14 O -0.413 6.413 15 C -0.270 4.270 16 C -0.046 4.046 17 C -0.137 4.137 18 N -0.125 5.125 19 N -0.156 5.156 20 C -0.033 4.033 21 C 0.193 3.807 22 F -0.178 7.178 23 F -0.176 7.176 24 C 0.002 3.998 25 C -0.158 4.158 26 H 0.072 0.928 27 H 0.080 0.920 28 H 0.075 0.925 29 H 0.096 0.904 30 H 0.080 0.920 31 H 0.051 0.949 32 H 0.063 0.937 33 H 0.073 0.927 34 H 0.100 0.900 35 H 0.094 0.906 36 H 0.102 0.898 37 H 0.146 0.854 38 H 0.135 0.865 39 H 0.135 0.865 40 H 0.108 0.892 41 H 0.116 0.884 42 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -2.878 -11.063 17.733 21.098 hybrid contribution 1.431 0.031 -1.082 1.794 sum -1.446 -11.032 16.651 20.026 Atomic orbital electron populations 1.22229 0.96854 1.01180 1.02392 1.21315 0.93618 0.84255 1.02068 1.48192 1.62817 1.13329 1.07578 1.19281 0.96658 0.93279 0.78078 1.21380 0.98236 1.30840 1.06070 0.92579 1.24912 0.97435 0.94931 0.96686 1.69916 1.35117 1.32214 1.16012 0.86599 0.84698 0.78160 0.78190 1.20292 1.21195 1.20173 1.17183 0.77664 0.86007 0.82090 1.90754 1.47921 1.16061 1.86601 1.20225 0.95838 1.09515 1.01427 1.22313 0.96342 0.95101 0.90874 1.20321 0.90380 0.99797 1.03173 1.77046 0.93851 1.18040 1.23538 1.47738 1.12211 1.38483 1.17174 1.22564 0.96597 0.91222 0.92934 1.22320 0.85266 0.86916 0.86184 1.93014 1.85234 1.71733 1.67839 1.93049 1.65620 1.77426 1.81547 1.21388 0.96778 0.94457 0.87132 1.20631 0.90172 1.02357 1.02660 0.92836 0.92038 0.92541 0.90429 0.91981 0.94947 0.93725 0.92671 0.89969 0.90576 0.89764 0.85428 0.86509 0.86452 0.89161 0.88448 0.91057 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.38 10.24 37.16 0.38 -2.00 16 2 C 0.11 1.86 6.07 -4.04 -0.02 1.84 16 3 N -0.59 -12.39 2.46 -176.33 -0.43 -12.83 16 4 C 0.25 6.33 5.22 -5.19 -0.03 6.30 16 5 C -0.53 -14.54 9.39 -34.44 -0.32 -14.86 16 6 H 0.06 1.52 7.81 -52.48 -0.41 1.11 16 7 C 0.06 1.76 5.46 -17.82 -0.10 1.66 16 8 N -0.89 -26.22 13.29 55.43 0.74 -25.48 16 9 Si 0.90 21.46 29.54 -169.99 -5.02 16.44 16 10 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 11 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 12 H -0.28 -6.64 7.11 56.52 0.40 -6.23 16 13 C 0.59 12.58 6.82 -12.52 -0.09 12.50 16 14 O -0.54 -13.96 16.66 5.28 0.09 -13.87 16 15 C -0.26 -4.45 4.10 -105.07 -0.43 -4.88 16 16 C 0.12 1.85 7.26 -82.02 -0.60 1.25 16 17 C -0.08 -0.99 9.96 36.01 0.36 -0.63 16 18 N -0.30 -4.28 12.50 33.90 0.42 -3.86 16 19 N -0.37 -4.70 3.56 -56.60 -0.20 -4.90 16 20 C 0.09 0.74 6.41 -4.04 -0.03 0.72 16 21 C 0.25 2.16 5.55 37.15 0.21 2.37 16 22 F -0.20 -1.75 17.34 2.25 0.04 -1.71 16 23 F -0.20 -2.26 17.04 2.25 0.04 -2.22 16 24 C 0.13 1.93 6.52 -81.60 -0.53 1.40 16 25 C -0.10 -1.33 9.69 36.01 0.35 -0.98 16 26 H 0.05 0.73 6.27 -51.93 -0.33 0.41 16 27 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 28 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 29 H 0.08 1.32 8.10 -51.93 -0.42 0.90 16 30 H 0.06 0.95 6.31 -51.93 -0.33 0.62 16 31 H 0.03 0.84 8.07 -51.93 -0.42 0.42 16 32 H 0.04 1.30 7.36 -51.93 -0.38 0.92 16 33 H 0.26 7.34 8.31 -40.82 -0.34 7.00 16 34 H 0.08 0.91 6.65 -51.93 -0.35 0.56 16 35 H 0.08 0.81 8.14 -51.93 -0.42 0.39 16 36 H 0.08 1.18 8.01 -51.93 -0.42 0.77 16 37 H 0.13 0.77 8.14 -51.92 -0.42 0.35 16 38 H 0.12 0.76 7.02 -51.93 -0.36 0.39 16 39 H 0.12 0.93 8.14 -51.93 -0.42 0.50 16 40 H 0.09 1.22 8.14 -51.93 -0.42 0.80 16 41 H 0.10 1.50 7.95 -51.93 -0.41 1.08 16 42 H 0.07 0.70 7.06 -51.93 -0.37 0.33 16 LS Contribution 364.14 15.07 5.49 5.49 Total: -1.00 -34.07 364.14 -5.55 -39.62 By element: Atomic # 1 Polarization: 4.52 SS G_CDS: -5.86 Total: -1.34 kcal Atomic # 6 Polarization: 5.52 SS G_CDS: -0.85 Total: 4.67 kcal Atomic # 7 Polarization: -47.60 SS G_CDS: 0.53 Total: -47.08 kcal Atomic # 8 Polarization: -13.96 SS G_CDS: 0.09 Total: -13.87 kcal Atomic # 9 Polarization: -4.01 SS G_CDS: 0.08 Total: -3.93 kcal Atomic # 14 Polarization: 21.46 SS G_CDS: -5.02 Total: 16.44 kcal Total LS contribution 5.49 Total: 5.49 kcal Total: -34.07 -5.55 -39.62 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000354818030.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.316 kcal (2) G-P(sol) polarization free energy of solvation -34.070 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.385 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.552 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.622 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.937 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds