Wall clock time and date at job start Tue Mar 31 2020 11:16:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31002 * 1 3 3 C 1.50703 * 119.99613 * 2 1 4 4 N 1.46501 * 109.46865 * 124.99509 * 3 2 1 5 5 C 1.46501 * 120.00346 * 276.22965 * 4 3 2 6 6 C 1.50703 * 109.47050 * 90.00062 * 5 4 3 7 7 H 1.08002 * 119.99730 * 0.02562 * 6 5 4 8 8 C 1.37871 * 120.00167 * 180.02562 * 6 5 4 9 9 N 1.31515 * 119.99992 * 180.02562 * 8 6 5 10 10 Si 1.86800 * 119.99801 * 0.02562 * 8 6 5 11 11 H 1.48506 * 109.47055 * 90.00259 * 10 8 6 12 12 H 1.48508 * 109.47010 * 209.99744 * 10 8 6 13 13 H 1.48490 * 109.47487 * 330.00028 * 10 8 6 14 14 C 1.34781 * 119.99824 * 96.23513 * 4 3 2 15 15 O 1.21280 * 119.99731 * 185.51711 * 14 4 3 16 16 C 1.50699 * 119.99738 * 5.51282 * 14 4 3 17 17 C 1.50697 * 115.54991 * 292.88465 * 16 14 4 18 18 C 1.38290 * 119.97067 * 123.12891 * 17 16 14 19 19 C 1.38240 * 120.11126 * 179.97438 * 18 17 16 20 20 C 1.38167 * 120.05589 * 0.05068 * 19 18 17 21 21 C 1.38708 * 119.94455 * 359.97105 * 20 19 18 22 22 O 1.35903 * 120.05498 * 179.97438 * 21 20 19 23 23 C 1.42904 * 116.99840 * 0.02562 * 22 21 20 24 24 C 1.38123 * 119.97521 * 302.85219 * 17 16 14 25 25 C 1.53002 * 117.49658 * 147.22013 * 16 14 4 26 26 C 1.52994 * 117.50026 * 78.55990 * 16 14 4 27 27 H 1.08005 * 119.99352 * 179.97438 * 1 2 3 28 28 H 1.07995 * 120.00295 * 0.02562 * 1 2 3 29 29 H 1.07995 * 120.00295 * 179.97438 * 2 1 3 30 30 H 1.08994 * 109.47171 * 244.99606 * 3 2 1 31 31 H 1.09005 * 109.46884 * 4.99945 * 3 2 1 32 32 H 1.08995 * 109.47110 * 210.00176 * 5 4 3 33 33 H 1.08996 * 109.47165 * 330.00584 * 5 4 3 34 34 H 0.97008 * 119.99553 * 180.02562 * 9 8 6 35 35 H 1.07997 * 119.94336 * 359.97438 * 18 17 16 36 36 H 1.08004 * 119.97300 * 180.02562 * 19 18 17 37 37 H 1.08005 * 120.02400 * 179.97438 * 20 19 18 38 38 H 1.08993 * 109.47075 * 300.00058 * 23 22 21 39 39 H 1.08998 * 109.46873 * 60.00264 * 23 22 21 40 40 H 1.08999 * 109.46746 * 179.97438 * 23 22 21 41 41 H 1.08001 * 120.02451 * 0.02562 * 24 17 16 42 42 H 1.09000 * 117.49590 * 359.97438 * 25 16 14 43 43 H 1.08997 * 117.49979 * 145.02215 * 25 16 14 44 44 H 1.09000 * 117.50172 * 214.97242 * 26 16 14 45 45 H 1.09003 * 117.50053 * 359.97343 * 26 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0634 1.3052 0.0000 4 7 2.9936 1.3320 1.1315 5 6 2.5218 1.7364 2.4582 6 6 2.0375 0.5236 3.2104 7 1 2.0776 -0.4510 2.7466 8 6 1.5433 0.6581 4.4904 9 7 1.1212 -0.4003 5.1469 10 14 1.4734 2.3439 5.2922 11 1 0.1680 2.9831 4.9876 12 1 1.6226 2.1992 6.7626 13 1 2.5738 3.1894 4.7638 14 6 4.2835 0.9848 0.9519 15 8 5.0297 0.9101 1.9050 16 6 4.7983 0.6892 -0.4332 17 6 4.2357 -0.5472 -1.0857 18 6 3.5984 -0.4535 -2.3094 19 6 3.0816 -1.5859 -2.9107 20 6 3.1999 -2.8145 -2.2896 21 6 3.8383 -2.9111 -1.0620 22 8 3.9555 -4.1182 -0.4489 23 6 3.3983 -5.2466 -1.1260 24 6 4.3620 -1.7740 -0.4637 25 6 6.2542 1.0481 -0.7372 26 6 5.1189 1.8813 -1.3371 27 1 -0.5399 -0.9354 -0.0004 28 1 -0.5400 0.9352 -0.0004 29 1 1.8500 -0.9352 0.0004 30 1 2.6213 1.4027 -0.9313 31 1 1.3584 2.1317 0.0896 32 1 3.3394 2.2024 3.0081 33 1 1.7035 2.4483 2.3514 34 1 0.7731 -0.3055 6.0475 35 1 3.5042 0.5060 -2.7960 36 1 2.5847 -1.5102 -3.8666 37 1 2.7957 -3.6988 -2.7597 38 1 2.3287 -5.0930 -1.2686 39 1 3.8812 -5.3628 -2.0963 40 1 3.5606 -6.1446 -0.5299 41 1 4.8634 -1.8472 0.4901 42 1 6.8395 1.4984 0.0646 43 1 6.8050 0.3902 -1.4095 44 1 4.9232 1.7712 -2.4037 45 1 4.9570 2.8794 -0.9300 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000359394357.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:16:01 Heat of formation + Delta-G solvation = -8.294027 kcal Electronic energy + Delta-G solvation = -27370.975277 eV Core-core repulsion = 23741.007379 eV Total energy + Delta-G solvation = -3629.967898 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 315.162 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -41.79911 -40.68209 -38.78276 -37.46736 -36.79751 -34.91811 -33.73940 -32.02123 -30.92236 -30.36339 -28.22152 -26.97704 -25.93697 -24.03658 -23.99822 -22.83295 -22.11870 -21.06892 -19.86260 -19.02845 -18.79322 -17.64334 -17.42417 -17.14848 -16.82262 -16.66571 -16.52305 -16.06636 -15.74825 -15.15871 -15.10140 -14.73214 -14.50529 -14.38427 -14.13004 -13.86494 -13.71196 -13.53414 -13.07571 -12.97316 -12.85747 -12.70650 -12.53230 -12.27216 -12.24160 -12.11593 -11.98018 -11.92700 -11.69557 -11.55824 -11.36738 -10.80626 -10.66078 -10.18425 -9.73362 -9.46768 -9.13154 -8.30754 -6.34361 0.30786 0.50319 1.29419 1.33424 1.38427 1.45117 1.73148 2.29793 2.31669 2.35998 2.64665 2.93215 3.02554 3.53457 3.60992 3.89681 3.93960 3.95648 4.11778 4.15517 4.25900 4.28494 4.35533 4.36385 4.47990 4.54615 4.64827 4.66658 4.71731 4.73912 4.79215 4.80043 4.92293 4.96375 5.04959 5.09996 5.20474 5.35492 5.45225 5.49790 5.55559 5.62298 5.80124 5.86127 6.00235 6.27297 6.47496 6.64033 6.67665 7.22565 7.38027 8.86754 Molecular weight = 315.16amu Principal moments of inertia in cm(-1) A = 0.012489 B = 0.005233 C = 0.004542 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2241.446882 B = 5349.108462 C = 6162.624153 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C -0.160 4.160 3 C 0.139 3.861 4 N -0.586 5.586 5 C 0.224 3.776 6 C -0.519 4.519 7 H 0.023 0.977 8 C 0.007 3.993 9 N -0.949 5.949 10 Si 0.947 3.053 11 H -0.249 1.249 12 H -0.284 1.284 13 H -0.255 1.255 14 C 0.539 3.461 15 O -0.592 6.592 16 C -0.143 4.143 17 C 0.003 3.997 18 C -0.142 4.142 19 C -0.065 4.065 20 C -0.208 4.208 21 C 0.113 3.887 22 O -0.353 6.353 23 C 0.020 3.980 24 C -0.173 4.173 25 C -0.140 4.140 26 C -0.119 4.119 27 H 0.091 0.909 28 H 0.114 0.886 29 H 0.077 0.923 30 H 0.116 0.884 31 H 0.093 0.907 32 H 0.018 0.982 33 H 0.051 0.949 34 H 0.266 0.734 35 H 0.162 0.838 36 H 0.168 0.832 37 H 0.152 0.848 38 H 0.063 0.937 39 H 0.076 0.924 40 H 0.110 0.890 41 H 0.078 0.922 42 H 0.087 0.913 43 H 0.121 0.879 44 H 0.149 0.851 45 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.135 1.077 -24.495 24.612 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C -0.179 4.179 3 C 0.017 3.983 4 N -0.315 5.315 5 C 0.102 3.898 6 C -0.558 4.558 7 H 0.041 0.959 8 C -0.190 4.190 9 N -0.590 5.590 10 Si 0.770 3.230 11 H -0.173 1.173 12 H -0.210 1.210 13 H -0.179 1.179 14 C 0.327 3.673 15 O -0.473 6.473 16 C -0.146 4.146 17 C 0.003 3.997 18 C -0.159 4.159 19 C -0.083 4.083 20 C -0.226 4.226 21 C 0.068 3.932 22 O -0.267 6.267 23 C -0.074 4.074 24 C -0.192 4.192 25 C -0.177 4.177 26 C -0.155 4.155 27 H 0.109 0.891 28 H 0.132 0.868 29 H 0.095 0.905 30 H 0.134 0.866 31 H 0.112 0.888 32 H 0.036 0.964 33 H 0.069 0.931 34 H 0.075 0.925 35 H 0.180 0.820 36 H 0.185 0.815 37 H 0.170 0.830 38 H 0.081 0.919 39 H 0.095 0.905 40 H 0.128 0.872 41 H 0.097 0.903 42 H 0.105 0.895 43 H 0.140 0.860 44 H 0.166 0.834 45 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges 2.514 0.950 -23.646 23.799 hybrid contribution -0.108 -0.573 1.771 1.865 sum 2.405 0.377 -21.875 22.010 Atomic orbital electron populations 1.23790 0.95427 1.02204 1.00123 1.23068 0.96511 0.98234 1.00113 1.20945 0.92406 0.95657 0.89283 1.47905 1.08339 1.64817 1.10430 1.19379 0.94558 0.94721 0.81144 1.21443 1.40501 0.93940 0.99893 0.95889 1.25868 0.94433 1.01287 0.97417 1.70081 1.44211 1.31774 1.12906 0.85722 0.80164 0.79466 0.77655 1.17322 1.21008 1.17887 1.20100 0.81844 0.75556 0.89762 1.90630 1.58344 1.53919 1.44437 1.19990 1.02824 0.98424 0.93386 1.18427 0.96996 0.89640 0.94668 1.21214 0.99676 1.00825 0.94226 1.21319 0.96227 0.90523 1.00195 1.21524 1.04926 1.01250 0.94948 1.19120 0.96350 0.84879 0.92809 1.86076 1.76366 1.15364 1.48944 1.23331 0.98830 0.86175 0.99049 1.20170 1.06075 0.92285 1.00672 1.23113 0.89013 1.02779 1.02843 1.23404 0.98754 0.93389 0.99993 0.89089 0.86835 0.90479 0.86577 0.88840 0.96354 0.93071 0.92533 0.82042 0.81501 0.83000 0.91866 0.90531 0.87159 0.90318 0.89452 0.86035 0.83368 0.87451 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -5.68 14.32 67.78 0.97 -4.71 16 2 C -0.16 -5.65 8.42 25.65 0.22 -5.43 16 3 C 0.14 4.42 5.41 85.63 0.46 4.88 16 4 N -0.59 -25.12 2.45 -830.49 -2.04 -27.16 16 5 C 0.22 11.36 4.22 85.63 0.36 11.72 16 6 C -0.52 -31.88 9.62 25.60 0.25 -31.64 16 7 H 0.02 1.61 8.00 -2.91 -0.02 1.59 16 8 C 0.01 0.43 5.47 84.65 0.46 0.89 16 9 N -0.95 -62.45 13.96 21.45 0.30 -62.15 16 10 Si 0.95 45.85 27.47 68.60 1.88 47.73 16 11 H -0.25 -10.94 7.11 99.48 0.71 -10.23 16 12 H -0.28 -13.67 7.11 99.48 0.71 -12.96 16 13 H -0.25 -11.83 6.54 99.48 0.65 -11.18 16 14 C 0.54 23.63 6.71 87.66 0.59 24.22 16 15 O -0.59 -32.47 16.38 -3.03 -0.05 -32.52 16 16 C -0.14 -4.41 1.07 -53.68 -0.06 -4.46 16 17 C 0.00 0.09 3.11 -19.88 -0.06 0.03 16 18 C -0.14 -2.83 7.65 22.28 0.17 -2.66 16 19 C -0.07 -1.15 10.04 22.25 0.22 -0.93 16 20 C -0.21 -4.62 9.04 22.37 0.20 -4.42 16 21 C 0.11 3.57 6.69 22.50 0.15 3.72 16 22 O -0.35 -11.47 10.50 -92.46 -0.97 -12.44 16 23 C 0.02 0.40 9.81 113.37 1.11 1.51 16 24 C -0.17 -6.33 8.75 22.36 0.20 -6.13 16 25 C -0.14 -3.59 9.76 30.62 0.30 -3.29 16 26 C -0.12 -2.31 8.72 30.62 0.27 -2.05 16 27 H 0.09 2.85 8.06 -2.91 -0.02 2.82 16 28 H 0.11 3.10 7.84 -2.91 -0.02 3.08 16 29 H 0.08 3.16 6.62 -2.91 -0.02 3.14 16 30 H 0.12 2.81 4.41 -2.39 -0.01 2.80 16 31 H 0.09 2.59 7.63 -2.38 -0.02 2.58 16 32 H 0.02 1.01 6.57 -2.39 -0.02 0.99 16 33 H 0.05 2.32 7.38 -2.39 -0.02 2.30 16 34 H 0.27 16.26 8.31 -92.70 -0.77 15.49 16 35 H 0.16 2.00 6.35 -2.91 -0.02 1.98 16 36 H 0.17 1.59 8.06 -2.91 -0.02 1.57 16 37 H 0.15 2.45 6.30 -2.91 -0.02 2.43 16 38 H 0.06 1.12 7.66 -2.39 -0.02 1.11 16 39 H 0.08 1.12 7.66 -2.39 -0.02 1.10 16 40 H 0.11 1.83 8.14 -2.39 -0.02 1.81 16 41 H 0.08 3.58 8.06 -2.91 -0.02 3.56 16 42 H 0.09 2.57 8.02 -2.39 -0.02 2.55 16 43 H 0.12 2.58 8.14 -2.39 -0.02 2.56 16 44 H 0.15 1.64 6.68 -2.39 -0.02 1.63 16 45 H 0.11 2.04 8.14 -2.39 -0.02 2.02 16 Total: -1.00 -88.41 368.36 5.86 -82.55 By element: Atomic # 1 Polarization: 21.79 SS G_CDS: 0.93 Total: 22.72 kcal Atomic # 6 Polarization: -24.54 SS G_CDS: 5.81 Total: -18.73 kcal Atomic # 7 Polarization: -87.57 SS G_CDS: -1.74 Total: -89.31 kcal Atomic # 8 Polarization: -43.94 SS G_CDS: -1.02 Total: -44.96 kcal Atomic # 14 Polarization: 45.85 SS G_CDS: 1.88 Total: 47.73 kcal Total: -88.41 5.86 -82.55 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000359394357.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.253 kcal (2) G-P(sol) polarization free energy of solvation -88.410 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.157 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.863 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.547 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.294 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds