Wall clock time and date at job start Tue Mar 31 2020 11:59:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86800 * 120.00033 * 2 1 4 4 H 1.48494 * 109.47399 * 239.99913 * 3 2 1 5 5 H 1.48502 * 109.46826 * 0.02562 * 3 2 1 6 6 H 1.48497 * 109.46882 * 119.99805 * 3 2 1 7 7 C 1.37879 * 119.99944 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99674 * 179.97438 * 7 2 1 9 9 C 1.50700 * 120.00153 * 359.97438 * 7 2 1 10 10 C 1.53003 * 109.47294 * 180.02562 * 9 7 2 11 11 C 1.52993 * 109.47073 * 180.02562 * 10 9 7 12 12 S 1.81403 * 109.47127 * 180.02562 * 11 10 9 13 13 O 1.42104 * 110.54196 * 291.75316 * 12 11 10 14 14 O 1.42096 * 110.54145 * 68.49912 * 12 11 10 15 15 N 1.65593 * 104.45345 * 180.12705 * 12 11 10 16 16 C 1.46502 * 120.00119 * 84.05742 * 15 12 11 17 17 C 1.53000 * 109.47145 * 95.00124 * 16 15 12 18 18 C 1.53001 * 117.50025 * 243.75210 * 17 16 15 19 19 C 1.52994 * 117.50138 * 175.08766 * 17 16 15 20 20 C 1.46499 * 120.00067 * 264.06446 * 15 12 11 21 21 C 1.53003 * 109.47233 * 108.29087 * 20 15 12 22 22 C 1.53773 * 113.61415 * 272.18797 * 21 20 15 23 23 C 1.53959 * 87.01950 * 220.04905 * 22 21 20 24 24 C 1.53782 * 113.61333 * 174.57605 * 21 20 15 25 25 H 0.96995 * 120.00337 * 359.97438 * 1 2 3 26 26 H 1.09003 * 109.46602 * 60.00340 * 9 7 2 27 27 H 1.08998 * 109.47547 * 300.00555 * 9 7 2 28 28 H 1.08999 * 109.46570 * 60.00058 * 10 9 7 29 29 H 1.08998 * 109.47150 * 300.00644 * 10 9 7 30 30 H 1.08999 * 109.47539 * 60.00450 * 11 10 9 31 31 H 1.08998 * 109.47493 * 300.00232 * 11 10 9 32 32 H 1.09003 * 109.47588 * 215.00470 * 16 15 12 33 33 H 1.09006 * 109.47060 * 335.00738 * 16 15 12 34 34 H 1.09008 * 115.54629 * 29.42149 * 17 16 15 35 35 H 1.08998 * 117.49874 * 359.97438 * 18 17 16 36 36 H 1.09003 * 117.49667 * 145.02580 * 18 17 16 37 37 H 1.09001 * 117.50181 * 214.98386 * 19 17 16 38 38 H 1.09005 * 117.50039 * 0.02562 * 19 17 16 39 39 H 1.09003 * 109.46850 * 228.28881 * 20 15 12 40 40 H 1.08997 * 109.47156 * 348.28726 * 20 15 12 41 41 H 1.09002 * 112.84645 * 43.38453 * 21 20 15 42 42 H 1.09004 * 113.61598 * 334.56677 * 22 21 20 43 43 H 1.08994 * 113.61707 * 105.47344 * 22 21 20 44 44 H 1.09000 * 113.53697 * 270.81385 * 23 22 21 45 45 H 1.08999 * 113.66990 * 139.93183 * 23 22 21 46 46 H 1.09001 * 113.61698 * 254.53063 * 24 21 20 47 47 H 1.09000 * 113.61586 * 25.35295 * 24 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1029 1.6964 -1.2124 5 1 1.2841 2.7464 0.0006 6 1 3.1028 1.6963 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1940 -0.0010 9 6 1.2510 -2.4992 -0.0005 10 6 2.2453 -3.6621 -0.0005 11 6 1.4803 -4.9871 -0.0012 12 16 2.6591 -6.3659 -0.0004 13 8 3.3588 -6.4244 -1.2358 14 8 3.3528 -6.4281 1.2381 15 7 1.7088 -7.7221 -0.0048 16 6 1.1839 -8.2447 -1.2687 17 6 2.1148 -9.3396 -1.7937 18 6 2.8265 -9.0841 -3.1237 19 6 1.6789 -10.0946 -3.0510 20 6 1.3929 -8.3991 1.2554 21 6 -0.0767 -8.1606 1.6080 22 6 -0.3151 -6.8757 2.4184 23 6 -1.3375 -7.6803 3.2416 24 6 -0.5469 -8.9393 2.8480 25 1 -0.4850 0.8400 0.0004 26 1 0.6241 -2.5567 -0.8904 27 1 0.6246 -2.5572 0.8896 28 1 2.8719 -3.6043 0.8895 29 1 2.8720 -3.6044 -0.8904 30 1 0.8540 -5.0447 -0.8914 31 1 0.8533 -5.0451 0.8885 32 1 0.1897 -8.6606 -1.1051 33 1 1.1245 -7.4375 -1.9989 34 1 2.6569 -9.9006 -1.0323 35 1 2.6313 -8.1361 -3.6250 36 1 3.8367 -9.4774 -3.2376 37 1 1.9346 -11.1521 -3.1171 38 1 0.7292 -9.8109 -3.5045 39 1 1.5717 -9.4690 1.1477 40 1 2.0260 -8.0031 2.0493 41 1 -0.7403 -8.2648 0.7495 42 1 0.5534 -6.5550 2.9939 43 1 -0.7600 -6.0686 1.8365 44 1 -2.3465 -7.6520 2.8302 45 1 -1.3083 -7.4625 4.3092 46 1 -1.1787 -9.7957 2.6123 47 1 0.2582 -9.1851 3.5404 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000360540370.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:59:56 Heat of formation + Delta-G solvation = -46.820579 kcal Electronic energy + Delta-G solvation = -25311.116143 eV Core-core repulsion = 21814.921560 eV Total energy + Delta-G solvation = -3496.194583 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 315.166 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -39.30147 -37.88061 -36.81478 -35.69879 -35.03417 -34.64351 -32.17859 -28.95125 -27.81394 -26.27892 -25.64737 -23.76418 -22.77367 -22.37921 -20.89664 -20.47576 -19.45298 -18.75599 -17.56581 -16.62646 -16.60268 -15.88115 -15.43859 -15.41178 -15.01611 -14.84590 -14.47764 -14.26881 -14.03153 -13.49469 -12.81007 -12.60801 -12.54706 -12.34413 -12.26478 -12.11178 -11.98616 -11.88285 -11.74993 -11.63808 -11.53406 -11.26517 -11.18041 -10.95447 -10.89373 -10.85976 -10.53840 -10.46052 -10.38349 -10.31201 -9.99490 -9.93209 -9.45335 -9.21430 -8.86829 -8.40086 -6.05243 -4.08317 0.48084 2.74014 3.32338 3.36115 3.39421 3.71338 4.04282 4.29789 4.38061 4.42980 4.52326 4.56626 4.64129 4.69819 4.77230 4.86107 5.01183 5.13165 5.16914 5.22639 5.25275 5.31094 5.38575 5.48284 5.52111 5.55716 5.59351 5.64523 5.72293 5.80210 5.86227 5.88526 5.91953 5.98200 6.04049 6.12215 6.21431 6.27045 6.37522 6.46748 6.57269 6.88102 7.57250 7.67566 7.92690 8.33411 8.97657 9.56302 11.05942 Molecular weight = 315.17amu Principal moments of inertia in cm(-1) A = 0.012784 B = 0.003771 C = 0.003185 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2189.649912 B = 7422.479871 C = 8789.248163 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C 0.058 3.942 3 Si 0.894 3.106 4 H -0.276 1.276 5 H -0.287 1.287 6 H -0.276 1.276 7 C -0.527 4.527 8 H 0.057 0.943 9 C 0.032 3.968 10 C -0.105 4.105 11 C -0.612 4.612 12 S 2.593 3.407 13 O -0.953 6.953 14 O -0.962 6.962 15 N -0.997 5.997 16 C 0.157 3.843 17 C -0.170 4.170 18 C -0.166 4.166 19 C -0.182 4.182 20 C 0.123 3.877 21 C -0.131 4.131 22 C -0.152 4.152 23 C -0.140 4.140 24 C -0.133 4.133 25 H 0.262 0.738 26 H 0.020 0.980 27 H 0.020 0.980 28 H 0.064 0.936 29 H 0.064 0.936 30 H 0.125 0.875 31 H 0.128 0.872 32 H 0.081 0.919 33 H 0.080 0.920 34 H 0.105 0.895 35 H 0.100 0.900 36 H 0.091 0.909 37 H 0.091 0.909 38 H 0.094 0.906 39 H 0.075 0.925 40 H 0.099 0.901 41 H 0.095 0.905 42 H 0.087 0.913 43 H 0.073 0.927 44 H 0.079 0.921 45 H 0.067 0.933 46 H 0.066 0.934 47 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.252 -22.273 0.543 22.393 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.534 5.534 2 C -0.143 4.143 3 Si 0.722 3.278 4 H -0.201 1.201 5 H -0.212 1.212 6 H -0.201 1.201 7 C -0.565 4.565 8 H 0.076 0.924 9 C -0.006 4.006 10 C -0.144 4.144 11 C -0.743 4.743 12 S 2.690 3.310 13 O -0.943 6.943 14 O -0.953 6.953 15 N -0.832 5.832 16 C 0.031 3.969 17 C -0.190 4.190 18 C -0.203 4.203 19 C -0.220 4.220 20 C -0.002 4.002 21 C -0.151 4.151 22 C -0.190 4.190 23 C -0.177 4.177 24 C -0.171 4.171 25 H 0.071 0.929 26 H 0.038 0.962 27 H 0.038 0.962 28 H 0.083 0.917 29 H 0.083 0.917 30 H 0.143 0.857 31 H 0.146 0.854 32 H 0.100 0.900 33 H 0.098 0.902 34 H 0.123 0.877 35 H 0.118 0.882 36 H 0.109 0.891 37 H 0.110 0.890 38 H 0.112 0.888 39 H 0.093 0.907 40 H 0.117 0.883 41 H 0.113 0.887 42 H 0.105 0.895 43 H 0.091 0.909 44 H 0.097 0.903 45 H 0.086 0.914 46 H 0.084 0.916 47 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -1.449 -22.188 0.547 22.242 hybrid contribution -0.352 1.131 -0.026 1.184 sum -1.801 -21.057 0.522 21.140 Atomic orbital electron populations 1.69943 1.06085 1.26874 1.50540 1.25010 0.94876 0.99326 0.95085 0.86623 0.79590 0.82852 0.78779 1.20108 1.21237 1.20111 1.21222 0.93214 0.90925 1.51163 0.92447 1.19046 0.93497 0.90412 0.97672 1.21483 0.99349 0.91757 1.01809 1.30651 1.16524 1.16006 1.11167 1.05580 0.75986 0.75131 0.74279 1.93575 1.69935 1.85678 1.45142 1.93536 1.70568 1.85896 1.45258 1.57624 1.70161 1.43752 1.11640 1.20773 0.96307 0.95888 0.83897 1.22715 1.03273 1.01239 0.91789 1.23008 0.96796 1.00605 0.99869 1.22978 0.99761 0.97664 1.01569 1.21443 0.95198 0.98304 0.85240 1.23026 0.97079 0.97449 0.97526 1.23208 1.00103 0.96822 0.98818 1.22790 0.98228 0.96411 1.00275 1.22877 0.99922 0.96986 0.97302 0.92854 0.96179 0.96150 0.91720 0.91701 0.85658 0.85391 0.90029 0.90157 0.87696 0.88153 0.89057 0.89036 0.88785 0.90699 0.88298 0.88689 0.89469 0.90853 0.90279 0.91399 0.91569 0.89914 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.60 13.29 55.43 0.74 -25.86 16 2 C 0.06 1.67 5.46 -17.82 -0.10 1.57 16 3 Si 0.89 21.63 29.54 -169.99 -5.02 16.61 16 4 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 5 H -0.29 -6.84 7.11 56.52 0.40 -6.43 16 6 H -0.28 -6.56 7.11 56.52 0.40 -6.15 16 7 C -0.53 -14.91 9.11 -34.44 -0.31 -15.22 16 8 H 0.06 1.57 7.74 -52.49 -0.41 1.17 16 9 C 0.03 0.82 4.97 -27.88 -0.14 0.68 16 10 C -0.10 -2.15 5.16 -26.73 -0.14 -2.29 16 11 C -0.61 -9.71 6.18 37.15 0.23 -9.48 16 12 S 2.59 39.64 5.34 -107.50 -0.57 39.06 16 13 O -0.95 -16.77 17.22 -57.54 -0.99 -17.76 16 14 O -0.96 -17.08 16.35 -57.54 -0.94 -18.02 16 15 N -1.00 -11.40 2.77 -114.37 -0.32 -11.71 16 16 C 0.16 1.55 5.43 -4.04 -0.02 1.53 16 17 C -0.17 -1.71 6.01 -90.62 -0.54 -2.25 16 18 C -0.17 -1.76 10.18 -26.69 -0.27 -2.03 16 19 C -0.18 -1.52 10.25 -26.69 -0.27 -1.80 16 20 C 0.12 1.22 5.62 -4.04 -0.02 1.20 16 21 C -0.13 -1.15 3.81 -89.81 -0.34 -1.49 16 22 C -0.15 -1.56 6.89 -25.83 -0.18 -1.74 16 23 C -0.14 -1.21 8.09 -25.82 -0.21 -1.42 16 24 C -0.13 -1.03 7.65 -25.92 -0.20 -1.22 16 25 H 0.26 7.35 8.31 -40.82 -0.34 7.01 16 26 H 0.02 0.53 8.14 -51.93 -0.42 0.10 16 27 H 0.02 0.53 8.14 -51.93 -0.42 0.11 16 28 H 0.06 1.31 8.14 -51.93 -0.42 0.89 16 29 H 0.06 1.31 8.14 -51.93 -0.42 0.89 16 30 H 0.13 1.77 8.14 -51.92 -0.42 1.35 16 31 H 0.13 1.86 6.56 -51.92 -0.34 1.52 16 32 H 0.08 0.62 7.09 -51.93 -0.37 0.26 16 33 H 0.08 0.80 7.51 -51.93 -0.39 0.41 16 34 H 0.10 1.06 8.14 -51.92 -0.42 0.64 16 35 H 0.10 1.14 8.03 -51.93 -0.42 0.72 16 36 H 0.09 0.94 8.14 -51.93 -0.42 0.52 16 37 H 0.09 0.67 8.14 -51.93 -0.42 0.25 16 38 H 0.09 0.70 8.14 -51.93 -0.42 0.27 16 39 H 0.07 0.63 8.14 -51.93 -0.42 0.20 16 40 H 0.10 1.10 6.30 -51.93 -0.33 0.77 16 41 H 0.09 0.78 7.13 -51.93 -0.37 0.41 16 42 H 0.09 0.96 7.89 -51.93 -0.41 0.55 16 43 H 0.07 0.81 7.40 -51.93 -0.38 0.42 16 44 H 0.08 0.65 8.14 -51.93 -0.42 0.23 16 45 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 46 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 47 H 0.08 0.61 8.10 -51.93 -0.42 0.19 16 LS Contribution 388.56 15.07 5.86 5.86 Total: -1.00 -33.25 388.56 -12.24 -45.48 By element: Atomic # 1 Polarization: 8.78 SS G_CDS: -8.47 Total: 0.31 kcal Atomic # 6 Polarization: -31.46 SS G_CDS: -2.52 Total: -33.98 kcal Atomic # 7 Polarization: -37.99 SS G_CDS: 0.42 Total: -37.57 kcal Atomic # 8 Polarization: -33.84 SS G_CDS: -1.93 Total: -35.78 kcal Atomic # 14 Polarization: 21.63 SS G_CDS: -5.02 Total: 16.61 kcal Atomic # 16 Polarization: 39.64 SS G_CDS: -0.57 Total: 39.06 kcal Total LS contribution 5.86 Total: 5.86 kcal Total: -33.25 -12.24 -45.48 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000360540370.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.338 kcal (2) G-P(sol) polarization free energy of solvation -33.245 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.583 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.237 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.483 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.821 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds