Wall clock time and date at job start Tue Mar 31 2020 10:42:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 N 1.46906 * 109.47057 * 2 1 4 4 C 1.46897 * 110.99821 * 76.54678 * 3 2 1 5 5 C 1.50703 * 109.46888 * 285.79154 * 4 3 2 6 6 H 1.07999 * 120.00237 * 358.93296 * 5 4 3 7 7 C 1.37877 * 119.99851 * 178.93191 * 5 4 3 8 8 N 1.31512 * 119.99918 * 180.02562 * 7 5 4 9 9 Si 1.86797 * 120.00027 * 0.02562 * 7 5 4 10 10 H 1.48506 * 109.47412 * 89.99909 * 9 7 5 11 11 H 1.48499 * 109.47279 * 209.99918 * 9 7 5 12 12 H 1.48500 * 109.47259 * 329.99877 * 9 7 5 13 13 C 1.46906 * 110.99938 * 200.49800 * 3 2 1 14 14 H 1.08995 * 109.47332 * 296.44532 * 13 3 2 15 15 C 1.52994 * 109.47100 * 176.44081 * 13 3 2 16 16 C 1.53006 * 109.46930 * 56.44279 * 13 3 2 17 17 C 1.50695 * 109.46847 * 181.64662 * 16 13 3 18 18 C 1.38259 * 119.99934 * 270.01546 * 17 16 13 19 19 C 1.38208 * 120.00002 * 179.97438 * 18 17 16 20 20 C 1.38266 * 120.00222 * 0.02562 * 19 18 17 21 21 C 1.38210 * 119.99604 * 359.97438 * 20 19 18 22 22 C 1.38215 * 120.00195 * 89.74313 * 17 16 13 23 23 C 1.50701 * 119.99831 * 359.97438 * 22 17 16 24 24 F 1.39901 * 109.47281 * 180.25604 * 23 22 17 25 25 F 1.39903 * 109.47077 * 300.25488 * 23 22 17 26 26 F 1.39896 * 109.47083 * 60.25311 * 23 22 17 27 27 H 1.09000 * 109.47462 * 288.86586 * 1 2 3 28 28 H 1.09006 * 109.47156 * 48.86855 * 1 2 3 29 29 H 1.09000 * 109.47338 * 168.86511 * 1 2 3 30 30 H 1.09000 * 109.47445 * 240.00270 * 2 1 3 31 31 H 1.08996 * 109.47052 * 119.99779 * 2 1 3 32 32 H 1.08999 * 109.46834 * 165.79813 * 4 3 2 33 33 H 1.08993 * 109.47422 * 45.79475 * 4 3 2 34 34 H 0.97003 * 119.99982 * 180.02562 * 8 7 5 35 35 H 1.09001 * 109.47424 * 180.02562 * 15 13 3 36 36 H 1.08995 * 109.47396 * 300.00411 * 15 13 3 37 37 H 1.09003 * 109.46941 * 60.00005 * 15 13 3 38 38 H 1.09003 * 109.47178 * 301.64447 * 16 13 3 39 39 H 1.08998 * 109.46830 * 61.64791 * 16 13 3 40 40 H 1.07999 * 119.99927 * 0.02562 * 18 17 16 41 41 H 1.08001 * 120.00249 * 179.97438 * 19 18 17 42 42 H 1.07991 * 120.00224 * 179.97438 * 20 19 18 43 43 H 1.08003 * 119.99985 * 179.97438 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0196 1.3851 0.0000 4 6 1.8943 1.9877 1.3338 5 6 0.4470 2.3074 1.6065 6 1 -0.3022 2.1010 0.8566 7 6 0.0794 2.8633 2.8135 8 7 -1.1836 3.1418 3.0517 9 14 1.3754 3.2210 4.1104 10 1 1.9006 4.5969 3.9193 11 1 0.7691 3.1057 5.4610 12 1 2.4869 2.2446 3.9818 13 6 3.4063 1.4532 -0.4803 14 1 4.0554 0.9086 0.2053 15 6 3.8505 2.9156 -0.5502 16 6 3.4950 0.8261 -1.8731 17 6 4.9245 0.8595 -2.3488 18 6 5.3904 1.9483 -3.0622 19 6 6.7015 1.9792 -3.4981 20 6 7.5473 0.9210 -3.2212 21 6 7.0815 -0.1675 -2.5081 22 6 5.7714 -0.1958 -2.0672 23 6 5.2655 -1.3797 -1.2839 24 9 6.2994 -2.3081 -1.1219 25 9 4.8214 -0.9524 -0.0278 26 9 4.2059 -1.9774 -1.9745 27 1 -0.3634 0.3323 0.9724 28 1 -0.3634 0.6760 -0.7741 29 1 -0.3634 -1.0083 -0.1985 30 1 1.8933 -0.5138 -0.8900 31 1 1.8932 -0.5138 0.8900 32 1 2.4828 2.9042 1.3751 33 1 2.2594 1.2872 2.0848 34 1 -1.4422 3.5333 3.9007 35 1 4.8792 2.9662 -0.9070 36 1 3.2013 3.4601 -1.2358 37 1 3.7872 3.3623 0.4421 38 1 3.1508 -0.2073 -1.8289 39 1 2.8684 1.3885 -2.5653 40 1 4.7299 2.7751 -3.2781 41 1 7.0654 2.8296 -4.0557 42 1 8.5717 0.9449 -3.5621 43 1 7.7420 -0.9943 -2.2921 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000361647166.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:42:49 Heat of formation + Delta-G solvation = -112.772022 kcal Electronic energy + Delta-G solvation = -28038.189225 eV Core-core repulsion = 23861.834081 eV Total energy + Delta-G solvation = -4176.355144 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 315.151 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -50.25327 -47.78028 -47.64212 -39.93383 -37.71717 -33.92238 -32.32549 -32.13493 -30.91748 -29.08677 -27.15774 -26.74205 -25.72097 -22.59772 -22.29605 -21.61620 -20.85133 -19.27372 -18.51568 -18.49606 -18.33489 -16.86377 -16.26910 -15.50379 -15.34820 -14.98676 -14.63565 -14.54905 -14.46600 -14.14758 -14.09256 -13.80686 -13.70964 -13.56049 -13.35386 -13.10225 -13.05614 -12.67910 -12.40660 -12.33093 -11.98680 -11.61752 -11.42185 -11.35961 -11.07777 -10.89131 -10.85578 -10.57519 -10.37963 -10.16142 -9.91571 -9.67808 -9.41207 -8.95973 -8.91650 -8.45542 -7.30169 -5.99198 -3.93866 0.73194 1.03631 2.60366 3.27183 3.30412 3.38509 3.41414 3.64625 3.95530 4.36298 4.43003 4.46945 4.58615 4.69466 4.88738 5.02407 5.14579 5.27766 5.29873 5.34519 5.41160 5.66087 5.78457 5.85594 5.87933 5.96371 6.09950 6.12326 6.14486 6.19978 6.28388 6.43158 6.46204 6.54954 6.64739 6.67698 6.90519 6.94765 7.08563 7.45300 7.71320 7.98926 8.14319 8.73602 9.12026 9.63183 11.13019 Molecular weight = 315.15amu Principal moments of inertia in cm(-1) A = 0.017585 B = 0.004296 C = 0.004011 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1591.877108 B = 6516.661960 C = 6978.865558 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.061 3.939 3 N -0.520 5.520 4 C 0.157 3.843 5 C -0.504 4.504 6 H 0.094 0.906 7 C 0.067 3.933 8 N -0.902 5.902 9 Si 0.867 3.133 10 H -0.277 1.277 11 H -0.287 1.287 12 H -0.269 1.269 13 C 0.079 3.921 14 H 0.043 0.957 15 C -0.147 4.147 16 C -0.103 4.103 17 C -0.014 4.014 18 C -0.116 4.116 19 C -0.087 4.087 20 C -0.132 4.132 21 C -0.073 4.073 22 C -0.186 4.186 23 C 0.506 3.494 24 F -0.182 7.182 25 F -0.167 7.167 26 F -0.175 7.175 27 H 0.091 0.909 28 H 0.054 0.946 29 H 0.030 0.970 30 H 0.053 0.947 31 H 0.023 0.977 32 H 0.028 0.972 33 H -0.012 1.012 34 H 0.262 0.738 35 H 0.050 0.950 36 H 0.064 0.936 37 H 0.062 0.938 38 H 0.085 0.915 39 H 0.092 0.908 40 H 0.137 0.863 41 H 0.130 0.870 42 H 0.131 0.869 43 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.848 -6.193 -13.710 23.342 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.067 4.067 3 N -0.245 5.245 4 C 0.031 3.969 5 C -0.543 4.543 6 H 0.112 0.888 7 C -0.134 4.134 8 N -0.542 5.542 9 Si 0.694 3.306 10 H -0.203 1.203 11 H -0.213 1.213 12 H -0.193 1.193 13 C -0.030 4.030 14 H 0.061 0.939 15 C -0.205 4.205 16 C -0.140 4.140 17 C -0.015 4.015 18 C -0.134 4.134 19 C -0.105 4.105 20 C -0.150 4.150 21 C -0.091 4.091 22 C -0.187 4.187 23 C 0.452 3.548 24 F -0.163 7.163 25 F -0.149 7.149 26 F -0.156 7.156 27 H 0.110 0.890 28 H 0.074 0.926 29 H 0.049 0.951 30 H 0.071 0.929 31 H 0.041 0.959 32 H 0.046 0.954 33 H 0.006 0.994 34 H 0.072 0.928 35 H 0.069 0.931 36 H 0.083 0.917 37 H 0.081 0.919 38 H 0.103 0.897 39 H 0.110 0.890 40 H 0.155 0.845 41 H 0.148 0.852 42 H 0.149 0.851 43 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges 17.409 -5.882 -13.853 23.013 hybrid contribution 1.112 -0.417 1.549 1.952 sum 18.521 -6.299 -12.304 23.111 Atomic orbital electron populations 1.22032 0.94584 0.98699 1.05161 1.21998 0.97035 0.89112 0.98517 1.62092 1.16442 1.17284 1.28664 1.20344 0.98742 0.93897 0.83947 1.21296 0.91763 1.39667 1.01525 0.88792 1.24886 0.94931 0.95572 0.97966 1.69883 1.15629 1.44302 1.24349 0.86991 0.82683 0.79117 0.81783 1.20284 1.21312 1.19346 1.21615 0.91780 0.96294 0.93305 0.93920 1.21986 0.99686 0.95871 1.02930 1.21179 0.90770 1.03582 0.98495 1.19785 0.95956 0.92036 0.93727 1.21167 0.96182 0.97809 0.98196 1.21395 0.93557 0.98133 0.97410 1.21096 1.00268 0.93781 0.99887 1.20968 0.93556 0.98877 0.95740 1.19882 0.96810 0.95868 1.06157 1.18345 0.75284 0.82784 0.78369 1.93142 1.58851 1.68547 1.95760 1.93244 1.89494 1.89277 1.42836 1.93179 1.57989 1.85135 1.79298 0.89037 0.92645 0.95079 0.92865 0.95865 0.95409 0.99407 0.92810 0.93140 0.91739 0.91915 0.89699 0.88985 0.84531 0.85179 0.85135 0.84745 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.99 8.59 37.15 0.32 -2.67 16 2 C 0.06 1.21 5.57 -3.82 -0.02 1.19 16 3 N -0.52 -10.78 4.32 -228.09 -0.99 -11.76 16 4 C 0.16 3.79 3.68 -4.98 -0.02 3.77 16 5 C -0.50 -14.00 7.87 -34.44 -0.27 -14.27 16 6 H 0.09 2.78 5.82 -52.49 -0.31 2.47 16 7 C 0.07 1.93 5.47 -17.82 -0.10 1.84 16 8 N -0.90 -27.41 13.96 55.43 0.77 -26.63 16 9 Si 0.87 21.61 27.49 -169.99 -4.67 16.94 16 10 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 11 H -0.29 -7.14 7.11 56.52 0.40 -6.73 16 12 H -0.27 -6.56 6.51 56.52 0.37 -6.19 16 13 C 0.08 1.35 1.96 -67.71 -0.13 1.22 16 14 H 0.04 0.78 5.69 -51.93 -0.30 0.48 16 15 C -0.15 -2.34 8.48 37.15 0.31 -2.02 16 16 C -0.10 -1.47 3.97 -27.88 -0.11 -1.58 16 17 C -0.01 -0.17 4.59 -104.63 -0.48 -0.65 16 18 C -0.12 -1.17 7.90 -39.58 -0.31 -1.49 16 19 C -0.09 -0.72 10.05 -39.58 -0.40 -1.12 16 20 C -0.13 -1.08 10.05 -39.58 -0.40 -1.48 16 21 C -0.07 -0.72 9.43 -39.58 -0.37 -1.09 16 22 C -0.19 -2.24 5.37 -104.62 -0.56 -2.81 16 23 C 0.51 6.70 2.81 36.01 0.10 6.80 16 24 F -0.18 -2.23 15.97 2.25 0.04 -2.20 16 25 F -0.17 -2.57 14.03 2.25 0.03 -2.54 16 26 F -0.17 -2.39 15.35 2.25 0.03 -2.36 16 27 H 0.09 2.18 5.67 -51.93 -0.29 1.88 16 28 H 0.05 1.14 7.99 -51.93 -0.41 0.72 16 29 H 0.03 0.54 8.14 -51.93 -0.42 0.12 16 30 H 0.05 0.93 5.32 -51.93 -0.28 0.65 16 31 H 0.02 0.48 7.74 -51.93 -0.40 0.08 16 32 H 0.03 0.67 5.03 -51.93 -0.26 0.41 16 33 H -0.01 -0.30 6.74 -51.93 -0.35 -0.65 16 34 H 0.26 7.52 8.31 -40.82 -0.34 7.18 16 35 H 0.05 0.67 6.20 -51.93 -0.32 0.35 16 36 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 37 H 0.06 1.10 6.05 -51.93 -0.31 0.79 16 38 H 0.08 1.26 3.27 -51.93 -0.17 1.09 16 39 H 0.09 1.27 8.09 -51.93 -0.42 0.85 16 40 H 0.14 1.23 8.03 -52.49 -0.42 0.81 16 41 H 0.13 0.74 8.06 -52.49 -0.42 0.32 16 42 H 0.13 0.72 8.06 -52.49 -0.42 0.30 16 43 H 0.13 1.10 7.16 -52.48 -0.38 0.73 16 LS Contribution 337.11 15.07 5.08 5.08 Total: -1.00 -30.34 337.11 -7.62 -37.97 By element: Atomic # 1 Polarization: 5.35 SS G_CDS: -5.48 Total: -0.13 kcal Atomic # 6 Polarization: -11.92 SS G_CDS: -2.44 Total: -14.36 kcal Atomic # 7 Polarization: -38.18 SS G_CDS: -0.21 Total: -38.40 kcal Atomic # 9 Polarization: -7.19 SS G_CDS: 0.10 Total: -7.09 kcal Atomic # 14 Polarization: 21.61 SS G_CDS: -4.67 Total: 16.94 kcal Total LS contribution 5.08 Total: 5.08 kcal Total: -30.34 -7.62 -37.97 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000361647166.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -74.806 kcal (2) G-P(sol) polarization free energy of solvation -30.342 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -105.148 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.624 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.966 kcal (6) G-S(sol) free energy of system = (1) + (5) -112.772 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds