Wall clock time and date at job start Tue Mar 31 2020 10:42:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 N 1.46906 * 109.47057 * 2 1 4 4 C 1.46897 * 110.99821 * 76.54678 * 3 2 1 5 5 C 1.50703 * 109.46888 * 285.79154 * 4 3 2 6 6 H 1.07999 * 120.00237 * 358.93296 * 5 4 3 7 7 C 1.37877 * 119.99851 * 178.93191 * 5 4 3 8 8 N 1.31512 * 119.99918 * 180.02562 * 7 5 4 9 9 Si 1.86797 * 120.00027 * 0.02562 * 7 5 4 10 10 H 1.48506 * 109.47412 * 89.99909 * 9 7 5 11 11 H 1.48499 * 109.47279 * 209.99918 * 9 7 5 12 12 H 1.48500 * 109.47259 * 329.99877 * 9 7 5 13 13 C 1.46906 * 110.99938 * 200.49800 * 3 2 1 14 14 H 1.08995 * 109.47332 * 296.44532 * 13 3 2 15 15 C 1.52994 * 109.47100 * 176.44081 * 13 3 2 16 16 C 1.53006 * 109.46930 * 56.44279 * 13 3 2 17 17 C 1.50695 * 109.46847 * 181.64662 * 16 13 3 18 18 C 1.38259 * 119.99934 * 270.01546 * 17 16 13 19 19 C 1.38208 * 120.00002 * 179.97438 * 18 17 16 20 20 C 1.38266 * 120.00222 * 0.02562 * 19 18 17 21 21 C 1.38210 * 119.99604 * 359.97438 * 20 19 18 22 22 C 1.38215 * 120.00195 * 89.74313 * 17 16 13 23 23 C 1.50701 * 119.99831 * 359.97438 * 22 17 16 24 24 F 1.39901 * 109.47281 * 180.25604 * 23 22 17 25 25 F 1.39903 * 109.47077 * 300.25488 * 23 22 17 26 26 F 1.39896 * 109.47083 * 60.25311 * 23 22 17 27 27 H 1.09000 * 109.47462 * 288.86586 * 1 2 3 28 28 H 1.09006 * 109.47156 * 48.86855 * 1 2 3 29 29 H 1.09000 * 109.47338 * 168.86511 * 1 2 3 30 30 H 1.09000 * 109.47445 * 240.00270 * 2 1 3 31 31 H 1.08996 * 109.47052 * 119.99779 * 2 1 3 32 32 H 1.08999 * 109.46834 * 165.79813 * 4 3 2 33 33 H 1.08993 * 109.47422 * 45.79475 * 4 3 2 34 34 H 0.97003 * 119.99982 * 180.02562 * 8 7 5 35 35 H 1.09001 * 109.47424 * 180.02562 * 15 13 3 36 36 H 1.08995 * 109.47396 * 300.00411 * 15 13 3 37 37 H 1.09003 * 109.46941 * 60.00005 * 15 13 3 38 38 H 1.09003 * 109.47178 * 301.64447 * 16 13 3 39 39 H 1.08998 * 109.46830 * 61.64791 * 16 13 3 40 40 H 1.07999 * 119.99927 * 0.02562 * 18 17 16 41 41 H 1.08001 * 120.00249 * 179.97438 * 19 18 17 42 42 H 1.07991 * 120.00224 * 179.97438 * 20 19 18 43 43 H 1.08003 * 119.99985 * 179.97438 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0196 1.3851 0.0000 4 6 1.8943 1.9877 1.3338 5 6 0.4470 2.3074 1.6065 6 1 -0.3022 2.1010 0.8566 7 6 0.0794 2.8633 2.8135 8 7 -1.1836 3.1418 3.0517 9 14 1.3754 3.2210 4.1104 10 1 1.9006 4.5969 3.9193 11 1 0.7691 3.1057 5.4610 12 1 2.4869 2.2446 3.9818 13 6 3.4063 1.4532 -0.4803 14 1 4.0554 0.9086 0.2053 15 6 3.8505 2.9156 -0.5502 16 6 3.4950 0.8261 -1.8731 17 6 4.9245 0.8595 -2.3488 18 6 5.3904 1.9483 -3.0622 19 6 6.7015 1.9792 -3.4981 20 6 7.5473 0.9210 -3.2212 21 6 7.0815 -0.1675 -2.5081 22 6 5.7714 -0.1958 -2.0672 23 6 5.2655 -1.3797 -1.2839 24 9 6.2994 -2.3081 -1.1219 25 9 4.8214 -0.9524 -0.0278 26 9 4.2059 -1.9774 -1.9745 27 1 -0.3634 0.3323 0.9724 28 1 -0.3634 0.6760 -0.7741 29 1 -0.3634 -1.0083 -0.1985 30 1 1.8933 -0.5138 -0.8900 31 1 1.8932 -0.5138 0.8900 32 1 2.4828 2.9042 1.3751 33 1 2.2594 1.2872 2.0848 34 1 -1.4422 3.5333 3.9007 35 1 4.8792 2.9662 -0.9070 36 1 3.2013 3.4601 -1.2358 37 1 3.7872 3.3623 0.4421 38 1 3.1508 -0.2073 -1.8289 39 1 2.8684 1.3885 -2.5653 40 1 4.7299 2.7751 -3.2781 41 1 7.0654 2.8296 -4.0557 42 1 8.5717 0.9449 -3.5621 43 1 7.7420 -0.9943 -2.2921 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000361647166.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:42:49 Heat of formation + Delta-G solvation = -129.879879 kcal Electronic energy + Delta-G solvation = -28038.931077 eV Core-core repulsion = 23861.834081 eV Total energy + Delta-G solvation = -4177.096996 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 315.151 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -51.28455 -48.78756 -48.72048 -40.80341 -39.16219 -35.33302 -34.20118 -33.01727 -32.17331 -30.71716 -28.72595 -28.01611 -26.71165 -24.00964 -23.25080 -23.09147 -22.20655 -20.74291 -19.55469 -19.50230 -19.23960 -18.91219 -17.35038 -16.67850 -16.46363 -16.35618 -15.80607 -15.65898 -15.57108 -15.40386 -15.22854 -15.13698 -15.10303 -14.86826 -14.63620 -14.47247 -14.14648 -13.94469 -13.70334 -13.55329 -13.34721 -13.13006 -12.88303 -12.74663 -12.49966 -12.28172 -12.15068 -12.09955 -11.95802 -11.75321 -11.67510 -11.42574 -10.98370 -10.61012 -10.15030 -9.75629 -8.99632 -8.20954 -6.19593 -0.02337 0.30670 1.31916 1.34423 1.43612 1.64353 2.36665 2.53353 2.70434 2.99666 3.09868 3.13712 3.36176 3.75247 3.79345 4.01029 4.01669 4.19308 4.30535 4.40582 4.42151 4.47048 4.52034 4.70110 4.72211 4.77510 4.79971 4.88230 4.92950 4.95482 5.06240 5.11402 5.23284 5.28810 5.30241 5.33167 5.44911 5.48532 5.64609 5.69231 5.87911 6.09764 6.44412 6.72074 6.87003 7.40918 8.94160 Molecular weight = 315.15amu Principal moments of inertia in cm(-1) A = 0.017585 B = 0.004296 C = 0.004011 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1591.877108 B = 6516.661960 C = 6978.865558 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C 0.064 3.936 3 N -0.529 5.529 4 C 0.167 3.833 5 C -0.502 4.502 6 H 0.065 0.935 7 C 0.011 3.989 8 N -0.947 5.947 9 Si 0.929 3.071 10 H -0.264 1.264 11 H -0.285 1.285 12 H -0.261 1.261 13 C 0.077 3.923 14 H 0.034 0.966 15 C -0.141 4.141 16 C -0.092 4.092 17 C -0.034 4.034 18 C -0.121 4.121 19 C -0.080 4.080 20 C -0.122 4.122 21 C -0.079 4.079 22 C -0.200 4.200 23 C 0.502 3.498 24 F -0.178 7.178 25 F -0.184 7.184 26 F -0.181 7.181 27 H 0.050 0.950 28 H 0.047 0.953 29 H 0.058 0.942 30 H 0.079 0.921 31 H 0.010 0.990 32 H 0.035 0.965 33 H -0.025 1.025 34 H 0.263 0.737 35 H 0.078 0.922 36 H 0.065 0.935 37 H 0.042 0.958 38 H 0.074 0.926 39 H 0.094 0.906 40 H 0.147 0.853 41 H 0.163 0.837 42 H 0.164 0.836 43 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.151 -5.745 -15.333 26.748 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.064 4.064 3 N -0.254 5.254 4 C 0.040 3.960 5 C -0.541 4.541 6 H 0.083 0.917 7 C -0.186 4.186 8 N -0.589 5.589 9 Si 0.754 3.246 10 H -0.189 1.189 11 H -0.210 1.210 12 H -0.186 1.186 13 C -0.032 4.032 14 H 0.051 0.949 15 C -0.199 4.199 16 C -0.129 4.129 17 C -0.035 4.035 18 C -0.138 4.138 19 C -0.097 4.097 20 C -0.140 4.140 21 C -0.097 4.097 22 C -0.201 4.201 23 C 0.448 3.552 24 F -0.159 7.159 25 F -0.166 7.166 26 F -0.163 7.163 27 H 0.069 0.931 28 H 0.066 0.934 29 H 0.077 0.923 30 H 0.097 0.903 31 H 0.029 0.971 32 H 0.052 0.948 33 H -0.008 1.008 34 H 0.073 0.927 35 H 0.097 0.903 36 H 0.084 0.916 37 H 0.061 0.939 38 H 0.092 0.908 39 H 0.112 0.888 40 H 0.164 0.836 41 H 0.180 0.820 42 H 0.181 0.819 43 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges 20.732 -5.442 -15.496 26.449 hybrid contribution 0.117 -0.621 1.927 2.028 sum 20.849 -6.063 -13.569 25.604 Atomic orbital electron populations 1.21876 0.95250 0.99988 1.02404 1.22005 0.96374 0.88884 0.99147 1.62019 1.19286 1.17669 1.26409 1.20097 0.96253 0.94049 0.85611 1.21529 0.93143 1.38556 1.00835 0.91698 1.25667 0.96862 0.95745 1.00323 1.70024 1.17738 1.45948 1.25163 0.85981 0.80145 0.79541 0.78912 1.18927 1.21035 1.18579 1.21730 0.89140 0.97497 0.94791 0.94864 1.21941 1.01448 0.94607 1.01859 1.20970 0.92890 1.02475 0.96595 1.19618 0.94683 0.93452 0.95756 1.21359 0.97399 0.97283 0.97799 1.21790 0.92526 0.99012 0.96386 1.21529 1.01729 0.92610 0.98122 1.21234 0.92704 1.00067 0.95734 1.19902 0.97928 0.95321 1.06991 1.18631 0.75192 0.83493 0.77917 1.93139 1.58521 1.68536 1.95733 1.93206 1.89769 1.89487 1.44105 1.93158 1.58454 1.85351 1.79298 0.93109 0.93383 0.92264 0.90253 0.97123 0.94752 1.00784 0.92748 0.90332 0.91563 0.93909 0.90756 0.88751 0.83571 0.81954 0.81852 0.83493 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.74 8.59 71.98 0.62 -5.12 16 2 C 0.06 2.54 5.57 86.30 0.48 3.02 16 3 N -0.53 -22.12 4.32 -875.53 -3.79 -25.91 16 4 C 0.17 8.18 3.68 85.56 0.31 8.50 16 5 C -0.50 -28.76 7.87 25.60 0.20 -28.56 16 6 H 0.06 4.03 5.82 -2.91 -0.02 4.01 16 7 C 0.01 0.63 5.47 84.66 0.46 1.09 16 8 N -0.95 -59.30 13.96 21.45 0.30 -59.00 16 9 Si 0.93 45.08 27.49 68.60 1.89 46.96 16 10 H -0.26 -12.22 7.11 99.48 0.71 -11.51 16 11 H -0.28 -13.60 7.11 99.48 0.71 -12.89 16 12 H -0.26 -12.26 6.51 99.48 0.65 -11.61 16 13 C 0.08 2.58 1.96 44.91 0.09 2.67 16 14 H 0.03 1.21 5.69 -2.39 -0.01 1.19 16 15 C -0.14 -4.28 8.48 71.98 0.61 -3.67 16 16 C -0.09 -2.54 3.97 29.85 0.12 -2.42 16 17 C -0.03 -0.77 4.59 -19.87 -0.09 -0.87 16 18 C -0.12 -2.05 7.90 22.27 0.18 -1.87 16 19 C -0.08 -0.95 10.05 22.27 0.22 -0.73 16 20 C -0.12 -1.44 10.05 22.27 0.22 -1.22 16 21 C -0.08 -1.31 9.43 22.27 0.21 -1.10 16 22 C -0.20 -4.47 5.37 -19.87 -0.11 -4.57 16 23 C 0.50 12.92 2.81 71.24 0.20 13.12 16 24 F -0.18 -4.20 15.97 44.97 0.72 -3.49 16 25 F -0.18 -5.65 14.03 44.97 0.63 -5.02 16 26 F -0.18 -4.89 15.35 44.97 0.69 -4.20 16 27 H 0.05 2.53 5.67 -2.39 -0.01 2.51 16 28 H 0.05 2.03 7.99 -2.38 -0.02 2.01 16 29 H 0.06 2.07 8.14 -2.39 -0.02 2.05 16 30 H 0.08 2.75 5.32 -2.39 -0.01 2.74 16 31 H 0.01 0.44 7.74 -2.39 -0.02 0.43 16 32 H 0.03 1.65 5.03 -2.39 -0.01 1.64 16 33 H -0.03 -1.31 6.74 -2.39 -0.02 -1.33 16 34 H 0.26 15.52 8.31 -92.71 -0.77 14.75 16 35 H 0.08 1.91 6.20 -2.39 -0.01 1.90 16 36 H 0.07 1.96 8.14 -2.39 -0.02 1.94 16 37 H 0.04 1.45 6.05 -2.39 -0.01 1.44 16 38 H 0.07 2.17 3.27 -2.39 -0.01 2.16 16 39 H 0.09 2.50 8.09 -2.39 -0.02 2.48 16 40 H 0.15 2.15 8.03 -2.91 -0.02 2.13 16 41 H 0.16 0.92 8.06 -2.91 -0.02 0.89 16 42 H 0.16 0.87 8.06 -2.92 -0.02 0.84 16 43 H 0.15 1.98 7.16 -2.91 -0.02 1.96 16 Total: -1.00 -67.80 337.11 5.15 -62.64 By element: Atomic # 1 Polarization: 8.76 SS G_CDS: 0.98 Total: 9.75 kcal Atomic # 6 Polarization: -25.47 SS G_CDS: 3.73 Total: -21.74 kcal Atomic # 7 Polarization: -81.42 SS G_CDS: -3.49 Total: -84.91 kcal Atomic # 9 Polarization: -14.75 SS G_CDS: 2.04 Total: -12.71 kcal Atomic # 14 Polarization: 45.08 SS G_CDS: 1.89 Total: 46.96 kcal Total: -67.80 5.15 -62.64 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000361647166.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -67.235 kcal (2) G-P(sol) polarization free energy of solvation -67.797 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -135.032 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.152 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.645 kcal (6) G-S(sol) free energy of system = (1) + (5) -129.880 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds