Wall clock time and date at job start Tue Mar 31 2020 11:47:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31628 * 1 3 3 Si 1.86810 * 119.99754 * 2 1 4 4 H 1.48504 * 109.46930 * 239.99916 * 3 2 1 5 5 H 1.48502 * 109.46817 * 359.97438 * 3 2 1 6 6 H 1.48500 * 109.47179 * 119.99834 * 3 2 1 7 7 C 1.38798 * 120.00467 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99876 * 180.02562 * 7 2 1 9 9 S 1.76197 * 119.99955 * 0.02562 * 7 2 1 10 10 C 1.81001 * 100.00093 * 180.02562 * 9 7 2 11 11 C 1.52998 * 109.47210 * 179.97438 * 10 9 7 12 12 C 1.52997 * 109.47517 * 179.97438 * 11 10 9 13 13 N 1.46895 * 109.47645 * 179.97438 * 12 11 10 14 14 C 1.47009 * 111.00277 * 293.95448 * 13 12 11 15 15 C 1.53094 * 109.26056 * 182.38960 * 14 13 12 16 16 O 1.43012 * 109.25707 * 303.15049 * 15 14 13 17 17 C 1.43013 * 113.73967 * 58.67220 * 16 15 14 18 18 H 1.08997 * 109.50999 * 61.30612 * 17 16 15 19 19 C 1.53006 * 109.50797 * 181.39512 * 17 16 15 20 20 O 1.42906 * 109.46752 * 294.99548 * 19 17 16 21 21 C 1.42898 * 113.99824 * 180.02562 * 20 19 17 22 22 C 1.52999 * 109.47174 * 180.02562 * 21 20 19 23 23 C 1.53000 * 117.49479 * 243.62021 * 22 21 20 24 24 C 1.52994 * 59.99944 * 252.50758 * 23 22 21 25 25 C 1.47014 * 110.99736 * 57.59075 * 13 12 11 26 26 H 0.96995 * 120.00390 * 0.02562 * 1 2 3 27 27 H 1.09002 * 109.47297 * 59.99488 * 10 9 7 28 28 H 1.08998 * 109.46894 * 299.99804 * 10 9 7 29 29 H 1.09002 * 109.47316 * 59.99612 * 11 10 9 30 30 H 1.09007 * 109.47022 * 299.99977 * 11 10 9 31 31 H 1.09002 * 109.47065 * 59.99556 * 12 11 10 32 32 H 1.09007 * 109.47035 * 300.00066 * 12 11 10 33 33 H 1.09002 * 109.50324 * 62.45030 * 14 13 12 34 34 H 1.09000 * 109.50721 * 302.33047 * 14 13 12 35 35 H 1.09006 * 109.50646 * 183.21517 * 15 14 13 36 36 H 1.08996 * 109.54172 * 63.10574 * 15 14 13 37 37 H 1.08993 * 109.46955 * 54.99966 * 19 17 16 38 38 H 1.09000 * 109.47050 * 174.99795 * 19 17 16 39 39 H 1.09008 * 109.46688 * 300.00244 * 21 20 19 40 40 H 1.09002 * 109.47367 * 59.99723 * 21 20 19 41 41 H 1.08997 * 115.54660 * 29.32830 * 22 21 20 42 42 H 1.08992 * 117.50102 * 359.97438 * 23 22 21 43 43 H 1.08997 * 117.49871 * 145.01942 * 23 22 21 44 44 H 1.09001 * 117.50589 * 252.50806 * 24 23 22 45 45 H 1.09008 * 117.49761 * 107.48979 * 24 23 22 46 46 H 1.09000 * 109.51353 * 57.66847 * 25 13 12 47 47 H 1.09006 * 109.50799 * 297.54142 * 25 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6179 0.0000 4 1 3.1040 1.6965 -1.2125 5 1 1.2851 2.7465 -0.0006 6 1 3.1040 1.6966 1.2125 7 6 2.0104 -1.2020 0.0005 8 1 3.0904 -1.2019 0.0010 9 16 1.1295 -2.7279 0.0005 10 6 2.5161 -3.8913 0.0021 11 6 1.9797 -5.3242 0.0030 12 6 3.1517 -6.3076 0.0037 13 7 2.6367 -7.6833 0.0052 14 6 1.9304 -7.9802 1.2598 15 6 1.4634 -9.4381 1.2437 16 8 0.6409 -9.6572 0.0945 17 6 1.2975 -9.3784 -1.1451 18 1 2.1591 -10.0366 -1.2567 19 6 0.3240 -9.6105 -2.3024 20 8 -0.0234 -10.9954 -2.3622 21 6 -0.9330 -11.3215 -3.4149 22 6 -1.2331 -12.8215 -3.3832 23 6 -0.7995 -13.6543 -4.5913 24 6 -2.2819 -13.3529 -4.3622 25 6 1.7628 -7.9199 -1.1532 26 1 -0.4850 0.8400 -0.0004 27 1 3.1241 -3.7308 0.8925 28 1 3.1253 -3.7316 -0.8875 29 1 1.3714 -5.4850 -0.8871 30 1 1.3706 -5.4836 0.8929 31 1 3.7603 -6.1469 0.8936 32 1 3.7604 -6.1481 -0.8864 33 1 1.0666 -7.3223 1.3556 34 1 2.6036 -7.8229 2.1025 35 1 0.8899 -9.6466 2.1469 36 1 2.3299 -10.0980 1.2023 37 1 -0.5762 -9.0166 -2.1446 38 1 0.7957 -9.3134 -3.2391 39 1 -1.8594 -10.7630 -3.2806 40 1 -0.4870 -11.0600 -4.3746 41 1 -1.1773 -13.2914 -2.4013 42 1 -0.3009 -13.1336 -5.4087 43 1 -0.4582 -14.6724 -4.4043 44 1 -2.9159 -14.1728 -4.0245 45 1 -2.7582 -12.6339 -5.0289 46 1 2.3137 -7.7186 -2.0719 47 1 0.8963 -7.2611 -1.0960 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000362606266.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:47:54 Heat of formation + Delta-G solvation = -74.520508 kcal Electronic energy + Delta-G solvation = -23639.921026 eV Core-core repulsion = 20142.525284 eV Total energy + Delta-G solvation = -3497.395742 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 315.166 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -39.99811 -38.59409 -36.94966 -36.30690 -32.53552 -32.38970 -32.24384 -28.64589 -27.54131 -25.83864 -25.49594 -24.15124 -22.78210 -22.67686 -21.74974 -20.91316 -19.80898 -17.50493 -17.12695 -16.97446 -16.42246 -15.91376 -15.64794 -15.28067 -14.86205 -14.82035 -14.65508 -14.58244 -14.41640 -14.26729 -13.52733 -13.15038 -12.89025 -12.81016 -12.26479 -12.05362 -11.95235 -11.91219 -11.58926 -11.53218 -11.32947 -11.23469 -11.05892 -10.94437 -10.80616 -10.73889 -10.59436 -10.50636 -10.29691 -9.77085 -9.74167 -9.67855 -9.07526 -8.44038 -8.21795 -6.56492 -6.24914 -3.95917 3.09631 3.19931 3.21439 3.26142 3.48243 3.54703 3.58224 3.86918 4.20170 4.42265 4.52353 4.61206 4.76737 4.86160 4.93683 4.95333 4.97451 5.04251 5.10968 5.12957 5.18283 5.22069 5.25425 5.27288 5.33165 5.36104 5.37213 5.48949 5.50733 5.56280 5.60457 5.71981 5.73420 5.74527 5.84016 5.86107 5.90090 6.05444 6.28712 6.44705 6.66214 6.86677 6.90371 6.95750 7.10632 7.57894 8.34083 9.21155 10.83208 Molecular weight = 315.17amu Principal moments of inertia in cm(-1) A = 0.019644 B = 0.002075 C = 0.001944 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1425.023356 B =13489.775012 C =14402.602726 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.870 5.870 2 C 0.071 3.929 3 Si 0.919 3.081 4 H -0.274 1.274 5 H -0.283 1.283 6 H -0.274 1.274 7 C -0.517 4.517 8 H 0.072 0.928 9 S -0.136 6.136 10 C -0.109 4.109 11 C -0.135 4.135 12 C 0.058 3.942 13 N -0.533 5.533 14 C 0.010 3.990 15 C 0.066 3.934 16 O -0.373 6.373 17 C 0.099 3.901 18 H 0.073 0.927 19 C 0.071 3.929 20 O -0.377 6.377 21 C 0.092 3.908 22 C -0.152 4.152 23 C -0.178 4.178 24 C -0.175 4.175 25 C 0.019 3.981 26 H 0.268 0.732 27 H 0.060 0.940 28 H 0.060 0.940 29 H 0.067 0.933 30 H 0.066 0.934 31 H 0.077 0.923 32 H 0.077 0.923 33 H 0.052 0.948 34 H 0.086 0.914 35 H 0.097 0.903 36 H 0.057 0.943 37 H 0.060 0.940 38 H 0.066 0.934 39 H 0.054 0.946 40 H 0.049 0.951 41 H 0.114 0.886 42 H 0.095 0.905 43 H 0.095 0.905 44 H 0.098 0.902 45 H 0.095 0.905 46 H 0.087 0.913 47 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.783 -24.936 -5.213 25.487 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.505 5.505 2 C -0.138 4.138 3 Si 0.745 3.255 4 H -0.199 1.199 5 H -0.208 1.208 6 H -0.199 1.199 7 C -0.665 4.665 8 H 0.090 0.910 9 S 0.092 5.908 10 C -0.258 4.258 11 C -0.175 4.175 12 C -0.071 4.071 13 N -0.256 5.256 14 C -0.119 4.119 15 C -0.011 4.011 16 O -0.292 6.292 17 C 0.041 3.959 18 H 0.091 0.909 19 C -0.006 4.006 20 O -0.296 6.296 21 C 0.016 3.984 22 C -0.170 4.170 23 C -0.215 4.215 24 C -0.212 4.212 25 C -0.109 4.109 26 H 0.078 0.922 27 H 0.079 0.921 28 H 0.079 0.921 29 H 0.086 0.914 30 H 0.085 0.915 31 H 0.096 0.904 32 H 0.096 0.904 33 H 0.070 0.930 34 H 0.105 0.895 35 H 0.115 0.885 36 H 0.075 0.925 37 H 0.078 0.922 38 H 0.084 0.916 39 H 0.072 0.928 40 H 0.068 0.932 41 H 0.132 0.868 42 H 0.113 0.887 43 H 0.114 0.886 44 H 0.116 0.884 45 H 0.114 0.886 46 H 0.105 0.895 47 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -0.218 -25.538 -5.108 26.045 hybrid contribution 1.350 2.278 -0.096 2.650 sum 1.132 -23.260 -5.204 23.862 Atomic orbital electron populations 1.70009 1.05931 1.27460 1.47144 1.25022 0.95088 0.99108 0.94575 0.86221 0.79240 0.81190 0.78863 1.19927 1.20793 1.19912 1.22642 0.94465 0.90750 1.58648 0.90993 1.84636 1.09736 0.99588 1.96873 1.23175 1.02770 0.97030 1.02846 1.21942 0.98602 0.94272 1.02679 1.22306 0.96843 0.84896 1.03087 1.62493 1.36181 1.25028 1.01925 1.22869 0.98483 0.97396 0.93103 1.22650 0.95053 0.94620 0.88821 1.88039 1.39380 1.88290 1.13508 1.22059 0.94704 0.94999 0.84181 0.90915 1.22459 0.98359 0.83143 0.96674 1.87914 1.64630 1.24615 1.52413 1.21996 0.92712 0.93634 0.90091 1.22137 1.04341 0.94278 0.96256 1.23072 0.97366 1.01274 0.99824 1.22978 0.92219 1.03459 1.02543 1.22725 0.96982 0.95932 0.95263 0.92238 0.92123 0.92104 0.91448 0.91526 0.90435 0.90425 0.92962 0.89547 0.88467 0.92499 0.92177 0.91618 0.92775 0.93241 0.86768 0.88681 0.88634 0.88394 0.88629 0.89455 0.92606 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -26.06 13.22 55.49 0.73 -25.32 16 2 C 0.07 2.02 5.49 -17.43 -0.10 1.93 16 3 Si 0.92 21.53 29.55 -169.99 -5.02 16.50 16 4 H -0.27 -6.28 7.11 56.52 0.40 -5.88 16 5 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 6 H -0.27 -6.28 7.11 56.52 0.40 -5.88 16 7 C -0.52 -14.85 9.50 30.94 0.29 -14.56 16 8 H 0.07 2.00 7.80 -52.48 -0.41 1.59 16 9 S -0.14 -3.58 21.44 -107.50 -2.30 -5.88 16 10 C -0.11 -2.17 5.67 37.16 0.21 -1.96 16 11 C -0.14 -2.16 4.50 -26.73 -0.12 -2.28 16 12 C 0.06 0.75 5.38 -3.83 -0.02 0.73 16 13 N -0.53 -6.48 4.94 -234.31 -1.16 -7.64 16 14 C 0.01 0.11 5.33 -3.72 -0.02 0.09 16 15 C 0.07 0.71 7.01 37.21 0.26 0.97 16 16 O -0.37 -4.88 10.43 -39.94 -0.42 -5.30 16 17 C 0.10 1.13 3.09 -26.68 -0.08 1.05 16 18 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 19 C 0.07 0.73 5.61 37.16 0.21 0.94 16 20 O -0.38 -4.34 10.31 -39.94 -0.41 -4.75 16 21 C 0.09 0.82 6.22 37.16 0.23 1.05 16 22 C -0.15 -1.24 6.06 -90.62 -0.55 -1.79 16 23 C -0.18 -1.20 10.18 -26.73 -0.27 -1.47 16 24 C -0.17 -1.12 10.25 -26.74 -0.27 -1.39 16 25 C 0.02 0.23 4.41 -3.71 -0.02 0.21 16 26 H 0.27 7.48 8.31 -40.82 -0.34 7.15 16 27 H 0.06 1.20 8.14 -51.92 -0.42 0.77 16 28 H 0.06 1.20 8.14 -51.92 -0.42 0.77 16 29 H 0.07 1.10 6.42 -51.93 -0.33 0.77 16 30 H 0.07 1.11 6.61 -51.92 -0.34 0.77 16 31 H 0.08 0.97 8.11 -51.93 -0.42 0.55 16 32 H 0.08 0.97 8.14 -51.92 -0.42 0.55 16 33 H 0.05 0.68 6.59 -51.93 -0.34 0.33 16 34 H 0.09 0.89 8.12 -51.93 -0.42 0.47 16 35 H 0.10 0.88 8.14 -51.93 -0.42 0.46 16 36 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 37 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 38 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 39 H 0.05 0.46 8.14 -51.92 -0.42 0.04 16 40 H 0.05 0.38 7.88 -51.93 -0.41 -0.03 16 41 H 0.11 1.01 8.14 -51.93 -0.42 0.59 16 42 H 0.09 0.59 8.03 -51.93 -0.42 0.17 16 43 H 0.10 0.57 8.14 -51.93 -0.42 0.15 16 44 H 0.10 0.54 8.14 -51.93 -0.42 0.12 16 45 H 0.10 0.55 8.14 -51.92 -0.42 0.12 16 46 H 0.09 0.91 8.14 -51.93 -0.42 0.49 16 47 H 0.06 0.72 6.41 -51.93 -0.33 0.39 16 LS Contribution 388.17 15.07 5.85 5.85 Total: -1.00 -32.25 388.17 -11.46 -43.71 By element: Atomic # 1 Polarization: 7.79 SS G_CDS: -8.48 Total: -0.70 kcal Atomic # 6 Polarization: -16.22 SS G_CDS: -0.25 Total: -16.47 kcal Atomic # 7 Polarization: -32.54 SS G_CDS: -0.42 Total: -32.96 kcal Atomic # 8 Polarization: -9.22 SS G_CDS: -0.83 Total: -10.05 kcal Atomic # 14 Polarization: 21.53 SS G_CDS: -5.02 Total: 16.50 kcal Atomic # 16 Polarization: -3.58 SS G_CDS: -2.30 Total: -5.88 kcal Total LS contribution 5.85 Total: 5.85 kcal Total: -32.25 -11.46 -43.71 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000362606266.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.812 kcal (2) G-P(sol) polarization free energy of solvation -32.250 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.062 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.459 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.709 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.521 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds