Wall clock time and date at job start Tue Mar 31 2020 11:47:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31628 * 1 3 3 Si 1.86810 * 119.99754 * 2 1 4 4 H 1.48504 * 109.46930 * 239.99916 * 3 2 1 5 5 H 1.48502 * 109.46817 * 359.97438 * 3 2 1 6 6 H 1.48500 * 109.47179 * 119.99834 * 3 2 1 7 7 C 1.38798 * 120.00467 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99876 * 180.02562 * 7 2 1 9 9 S 1.76197 * 119.99955 * 0.02562 * 7 2 1 10 10 C 1.81001 * 100.00093 * 180.02562 * 9 7 2 11 11 C 1.52998 * 109.47210 * 179.97438 * 10 9 7 12 12 C 1.52997 * 109.47517 * 179.97438 * 11 10 9 13 13 N 1.46895 * 109.47645 * 179.97438 * 12 11 10 14 14 C 1.47009 * 111.00277 * 293.95448 * 13 12 11 15 15 C 1.53094 * 109.26056 * 182.38960 * 14 13 12 16 16 O 1.43012 * 109.25707 * 303.15049 * 15 14 13 17 17 C 1.43013 * 113.73967 * 58.67220 * 16 15 14 18 18 H 1.08997 * 109.50999 * 61.30612 * 17 16 15 19 19 C 1.53006 * 109.50797 * 181.39512 * 17 16 15 20 20 O 1.42906 * 109.46752 * 294.99548 * 19 17 16 21 21 C 1.42898 * 113.99824 * 180.02562 * 20 19 17 22 22 C 1.52999 * 109.47174 * 180.02562 * 21 20 19 23 23 C 1.53000 * 117.49479 * 243.62021 * 22 21 20 24 24 C 1.52994 * 59.99944 * 252.50758 * 23 22 21 25 25 C 1.47014 * 110.99736 * 57.59075 * 13 12 11 26 26 H 0.96995 * 120.00390 * 0.02562 * 1 2 3 27 27 H 1.09002 * 109.47297 * 59.99488 * 10 9 7 28 28 H 1.08998 * 109.46894 * 299.99804 * 10 9 7 29 29 H 1.09002 * 109.47316 * 59.99612 * 11 10 9 30 30 H 1.09007 * 109.47022 * 299.99977 * 11 10 9 31 31 H 1.09002 * 109.47065 * 59.99556 * 12 11 10 32 32 H 1.09007 * 109.47035 * 300.00066 * 12 11 10 33 33 H 1.09002 * 109.50324 * 62.45030 * 14 13 12 34 34 H 1.09000 * 109.50721 * 302.33047 * 14 13 12 35 35 H 1.09006 * 109.50646 * 183.21517 * 15 14 13 36 36 H 1.08996 * 109.54172 * 63.10574 * 15 14 13 37 37 H 1.08993 * 109.46955 * 54.99966 * 19 17 16 38 38 H 1.09000 * 109.47050 * 174.99795 * 19 17 16 39 39 H 1.09008 * 109.46688 * 300.00244 * 21 20 19 40 40 H 1.09002 * 109.47367 * 59.99723 * 21 20 19 41 41 H 1.08997 * 115.54660 * 29.32830 * 22 21 20 42 42 H 1.08992 * 117.50102 * 359.97438 * 23 22 21 43 43 H 1.08997 * 117.49871 * 145.01942 * 23 22 21 44 44 H 1.09001 * 117.50589 * 252.50806 * 24 23 22 45 45 H 1.09008 * 117.49761 * 107.48979 * 24 23 22 46 46 H 1.09000 * 109.51353 * 57.66847 * 25 13 12 47 47 H 1.09006 * 109.50799 * 297.54142 * 25 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6179 0.0000 4 1 3.1040 1.6965 -1.2125 5 1 1.2851 2.7465 -0.0006 6 1 3.1040 1.6966 1.2125 7 6 2.0104 -1.2020 0.0005 8 1 3.0904 -1.2019 0.0010 9 16 1.1295 -2.7279 0.0005 10 6 2.5161 -3.8913 0.0021 11 6 1.9797 -5.3242 0.0030 12 6 3.1517 -6.3076 0.0037 13 7 2.6367 -7.6833 0.0052 14 6 1.9304 -7.9802 1.2598 15 6 1.4634 -9.4381 1.2437 16 8 0.6409 -9.6572 0.0945 17 6 1.2975 -9.3784 -1.1451 18 1 2.1591 -10.0366 -1.2567 19 6 0.3240 -9.6105 -2.3024 20 8 -0.0234 -10.9954 -2.3622 21 6 -0.9330 -11.3215 -3.4149 22 6 -1.2331 -12.8215 -3.3832 23 6 -0.7995 -13.6543 -4.5913 24 6 -2.2819 -13.3529 -4.3622 25 6 1.7628 -7.9199 -1.1532 26 1 -0.4850 0.8400 -0.0004 27 1 3.1241 -3.7308 0.8925 28 1 3.1253 -3.7316 -0.8875 29 1 1.3714 -5.4850 -0.8871 30 1 1.3706 -5.4836 0.8929 31 1 3.7603 -6.1469 0.8936 32 1 3.7604 -6.1481 -0.8864 33 1 1.0666 -7.3223 1.3556 34 1 2.6036 -7.8229 2.1025 35 1 0.8899 -9.6466 2.1469 36 1 2.3299 -10.0980 1.2023 37 1 -0.5762 -9.0166 -2.1446 38 1 0.7957 -9.3134 -3.2391 39 1 -1.8594 -10.7630 -3.2806 40 1 -0.4870 -11.0600 -4.3746 41 1 -1.1773 -13.2914 -2.4013 42 1 -0.3009 -13.1336 -5.4087 43 1 -0.4582 -14.6724 -4.4043 44 1 -2.9159 -14.1728 -4.0245 45 1 -2.7582 -12.6339 -5.0289 46 1 2.3137 -7.7186 -2.0719 47 1 0.8963 -7.2611 -1.0960 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000362606266.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:47:53 Heat of formation + Delta-G solvation = -94.798851 kcal Electronic energy + Delta-G solvation = -23640.800361 eV Core-core repulsion = 20142.525284 eV Total energy + Delta-G solvation = -3498.275077 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 315.166 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -40.93492 -39.31431 -37.76985 -37.19656 -34.63309 -33.72391 -33.14790 -29.60700 -28.41843 -27.79407 -26.57533 -25.26033 -23.78590 -23.25245 -22.78417 -21.56637 -20.84310 -19.57494 -17.91878 -17.83304 -17.40095 -16.91384 -16.68635 -16.50607 -16.21353 -16.19800 -15.84278 -15.64642 -15.36241 -15.18563 -14.95435 -14.33102 -13.97787 -13.70047 -13.51201 -13.30286 -13.26001 -13.00762 -12.89388 -12.61092 -12.53894 -12.42549 -12.38850 -12.22705 -12.00501 -11.72130 -11.54259 -11.43279 -11.28836 -11.19642 -11.15068 -10.65089 -10.46748 -10.38366 -9.36195 -8.70233 -8.39133 -6.16357 1.29936 1.39566 1.46489 1.73117 2.26700 2.35664 2.71688 2.84834 2.95013 3.01199 3.29020 3.76027 3.86854 3.89141 3.93743 3.97010 4.01550 4.05706 4.16179 4.20663 4.26025 4.26589 4.32607 4.36914 4.44549 4.49260 4.54649 4.57490 4.62781 4.68381 4.70876 4.77698 4.83611 4.86256 4.92815 5.00987 5.01428 5.06207 5.23243 5.24144 5.26030 5.37394 5.88062 5.90689 6.15535 6.15856 6.26734 7.02794 8.69955 Molecular weight = 315.17amu Principal moments of inertia in cm(-1) A = 0.019644 B = 0.002075 C = 0.001944 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1425.023356 B =13489.775012 C =14402.602726 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.908 5.908 2 C 0.014 3.986 3 Si 0.994 3.006 4 H -0.264 1.264 5 H -0.275 1.275 6 H -0.264 1.264 7 C -0.538 4.538 8 H 0.074 0.926 9 S -0.206 6.206 10 C -0.083 4.083 11 C -0.122 4.122 12 C 0.068 3.932 13 N -0.529 5.529 14 C 0.009 3.991 15 C 0.065 3.935 16 O -0.396 6.396 17 C 0.101 3.899 18 H 0.074 0.926 19 C 0.070 3.930 20 O -0.398 6.398 21 C 0.089 3.911 22 C -0.172 4.172 23 C -0.175 4.175 24 C -0.166 4.166 25 C 0.021 3.979 26 H 0.271 0.729 27 H 0.064 0.936 28 H 0.065 0.935 29 H 0.061 0.939 30 H 0.057 0.943 31 H 0.087 0.913 32 H 0.088 0.912 33 H 0.034 0.966 34 H 0.101 0.899 35 H 0.112 0.888 36 H 0.065 0.935 37 H 0.053 0.947 38 H 0.087 0.913 39 H 0.054 0.946 40 H 0.062 0.938 41 H 0.101 0.899 42 H 0.101 0.899 43 H 0.101 0.899 44 H 0.106 0.894 45 H 0.103 0.897 46 H 0.102 0.898 47 H 0.039 0.961 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.304 -25.426 -5.779 26.176 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.544 5.544 2 C -0.191 4.191 3 Si 0.816 3.184 4 H -0.188 1.188 5 H -0.200 1.200 6 H -0.189 1.189 7 C -0.686 4.686 8 H 0.092 0.908 9 S 0.022 5.978 10 C -0.233 4.233 11 C -0.162 4.162 12 C -0.061 4.061 13 N -0.252 5.252 14 C -0.119 4.119 15 C -0.012 4.012 16 O -0.316 6.316 17 C 0.043 3.957 18 H 0.092 0.908 19 C -0.006 4.006 20 O -0.318 6.318 21 C 0.013 3.987 22 C -0.191 4.191 23 C -0.212 4.212 24 C -0.203 4.203 25 C -0.107 4.107 26 H 0.080 0.920 27 H 0.083 0.917 28 H 0.084 0.916 29 H 0.080 0.920 30 H 0.076 0.924 31 H 0.106 0.894 32 H 0.107 0.893 33 H 0.052 0.948 34 H 0.119 0.881 35 H 0.130 0.870 36 H 0.084 0.916 37 H 0.071 0.929 38 H 0.105 0.895 39 H 0.072 0.928 40 H 0.080 0.920 41 H 0.119 0.881 42 H 0.119 0.881 43 H 0.120 0.880 44 H 0.125 0.875 45 H 0.122 0.878 46 H 0.120 0.880 47 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges 1.302 -26.049 -5.674 26.692 hybrid contribution 0.864 2.314 0.087 2.471 sum 2.166 -23.735 -5.587 24.480 Atomic orbital electron populations 1.70151 1.07734 1.28619 1.47943 1.26097 0.96045 1.03205 0.93734 0.85060 0.77926 0.75986 0.79411 1.18835 1.20016 1.18869 1.23007 0.94743 0.91889 1.58947 0.90777 1.84685 1.14533 1.01502 1.97066 1.23112 0.99969 0.97038 1.03164 1.21860 0.99727 0.92558 1.02039 1.22227 0.95430 0.84312 1.04153 1.62553 1.36369 1.23957 1.02363 1.22923 0.98072 0.97547 0.93347 1.22777 0.95436 0.94169 0.88786 1.88018 1.40585 1.88451 1.14511 1.22096 0.94904 0.94658 0.84058 0.90846 1.22506 0.98078 0.82814 0.97249 1.87880 1.65266 1.25041 1.53572 1.22129 0.92384 0.94178 0.89987 1.22127 1.06580 0.93997 0.96352 1.23159 0.97719 1.01335 0.98965 1.23073 0.92178 1.03518 1.01488 1.22745 0.96468 0.95803 0.95727 0.91976 0.91741 0.91579 0.91999 0.92419 0.89432 0.89331 0.94800 0.88066 0.87005 0.91629 0.92893 0.89495 0.92806 0.91975 0.88065 0.88077 0.88011 0.87527 0.87833 0.87981 0.94248 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -55.12 13.22 21.65 0.29 -54.84 16 2 C 0.01 0.80 5.49 84.86 0.47 1.27 16 3 Si 0.99 43.84 29.55 68.60 2.03 45.86 16 4 H -0.26 -11.10 7.11 99.48 0.71 -10.40 16 5 H -0.28 -11.69 7.11 99.48 0.71 -10.99 16 6 H -0.26 -11.14 7.11 99.48 0.71 -10.43 16 7 C -0.54 -31.13 9.50 67.95 0.65 -30.48 16 8 H 0.07 4.10 7.80 -2.91 -0.02 4.07 16 9 S -0.21 -11.03 21.44 -56.49 -1.21 -12.24 16 10 C -0.08 -3.28 5.67 71.98 0.41 -2.87 16 11 C -0.12 -3.81 4.50 30.59 0.14 -3.67 16 12 C 0.07 1.63 5.38 86.30 0.46 2.10 16 13 N -0.53 -12.00 4.94 -895.22 -4.42 -16.42 16 14 C 0.01 0.20 5.33 86.31 0.46 0.66 16 15 C 0.06 1.33 7.01 72.01 0.50 1.83 16 16 O -0.40 -10.20 10.43 -144.47 -1.51 -11.70 16 17 C 0.10 2.23 3.09 30.63 0.09 2.33 16 18 H 0.07 1.61 8.14 -2.39 -0.02 1.59 16 19 C 0.07 1.42 5.61 71.98 0.40 1.83 16 20 O -0.40 -9.06 10.31 -144.47 -1.49 -10.55 16 21 C 0.09 1.55 6.22 71.98 0.45 2.00 16 22 C -0.17 -2.73 6.06 -10.80 -0.07 -2.79 16 23 C -0.17 -2.13 10.18 30.59 0.31 -1.82 16 24 C -0.17 -1.90 10.25 30.59 0.31 -1.59 16 25 C 0.02 0.46 4.41 86.31 0.38 0.85 16 26 H 0.27 15.31 8.31 -92.71 -0.77 14.54 16 27 H 0.06 2.48 8.14 -2.39 -0.02 2.46 16 28 H 0.07 2.53 8.14 -2.40 -0.02 2.51 16 29 H 0.06 2.01 6.42 -2.39 -0.02 2.00 16 30 H 0.06 1.92 6.61 -2.38 -0.02 1.90 16 31 H 0.09 1.96 8.11 -2.39 -0.02 1.94 16 32 H 0.09 1.97 8.14 -2.38 -0.02 1.95 16 33 H 0.03 0.87 6.59 -2.39 -0.02 0.85 16 34 H 0.10 1.90 8.12 -2.39 -0.02 1.88 16 35 H 0.11 1.90 8.14 -2.38 -0.02 1.88 16 36 H 0.07 1.23 8.14 -2.39 -0.02 1.21 16 37 H 0.05 1.12 8.14 -2.39 -0.02 1.10 16 38 H 0.09 1.34 8.14 -2.39 -0.02 1.32 16 39 H 0.05 0.90 8.14 -2.38 -0.02 0.88 16 40 H 0.06 0.89 7.88 -2.39 -0.02 0.87 16 41 H 0.10 1.83 8.14 -2.39 -0.02 1.81 16 42 H 0.10 1.10 8.03 -2.39 -0.02 1.08 16 43 H 0.10 1.09 8.14 -2.39 -0.02 1.07 16 44 H 0.11 1.03 8.14 -2.39 -0.02 1.01 16 45 H 0.10 1.02 8.14 -2.38 -0.02 1.00 16 46 H 0.10 1.94 8.14 -2.39 -0.02 1.93 16 47 H 0.04 1.01 6.41 -2.38 -0.02 1.00 16 Total: -1.00 -69.77 388.17 -0.42 -70.19 By element: Atomic # 1 Polarization: 19.14 SS G_CDS: 0.92 Total: 20.06 kcal Atomic # 6 Polarization: -35.33 SS G_CDS: 4.97 Total: -30.36 kcal Atomic # 7 Polarization: -67.13 SS G_CDS: -4.13 Total: -71.26 kcal Atomic # 8 Polarization: -19.25 SS G_CDS: -3.00 Total: -22.25 kcal Atomic # 14 Polarization: 43.84 SS G_CDS: 2.03 Total: 45.86 kcal Atomic # 16 Polarization: -11.03 SS G_CDS: -1.21 Total: -12.24 kcal Total: -69.77 -0.42 -70.19 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000362606266.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.610 kcal (2) G-P(sol) polarization free energy of solvation -69.765 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.375 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.424 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.189 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.799 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds