Wall clock time and date at job start Tue Mar 31 2020 12:04:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86798 * 119.99973 * 2 1 4 4 H 1.48506 * 109.47297 * 89.99710 * 3 2 1 5 5 H 1.48503 * 109.47261 * 329.99891 * 3 2 1 6 6 H 1.48500 * 109.47454 * 209.99884 * 3 2 1 7 7 C 1.37877 * 120.00089 * 180.02562 * 2 1 3 8 8 H 1.07991 * 120.00203 * 359.97438 * 7 2 1 9 9 C 1.50708 * 120.00008 * 180.02562 * 7 2 1 10 10 C 1.53000 * 109.46973 * 179.97438 * 9 7 2 11 11 S 1.81397 * 109.46664 * 179.97438 * 10 9 7 12 12 O 1.42098 * 110.54544 * 291.62390 * 11 10 9 13 13 O 1.42100 * 110.54384 * 68.38136 * 11 10 9 14 14 N 1.65606 * 104.44910 * 180.02562 * 11 10 9 15 15 C 1.46500 * 119.99960 * 64.99739 * 14 11 10 16 16 H 1.09001 * 109.46762 * 25.00651 * 15 14 11 17 17 C 1.53054 * 109.47021 * 265.01009 * 15 14 11 18 18 C 1.52995 * 109.44342 * 299.42142 * 17 15 14 19 19 C 1.52998 * 109.54532 * 299.71385 * 18 17 15 20 20 C 1.53057 * 109.43817 * 60.28835 * 19 18 17 21 21 C 1.52678 * 109.46868 * 144.99539 * 15 14 11 22 22 C 1.53980 * 109.80952 * 299.67814 * 21 15 14 23 23 C 1.54950 * 104.13543 * 217.32667 * 22 21 15 24 24 C 1.54917 * 102.78415 * 37.70169 * 23 22 21 25 25 C 1.53612 * 109.97246 * 182.33134 * 21 15 14 26 26 H 0.96997 * 119.99848 * 0.02562 * 1 2 3 27 27 H 1.08994 * 109.46697 * 300.00254 * 9 7 2 28 28 H 1.09000 * 109.47083 * 59.99509 * 9 7 2 29 29 H 1.08996 * 109.47332 * 299.99701 * 10 9 7 30 30 H 1.08996 * 109.46646 * 60.00565 * 10 9 7 31 31 H 0.96996 * 120.00236 * 245.00251 * 14 11 10 32 32 H 1.08993 * 109.48065 * 59.41302 * 17 15 14 33 33 H 1.09001 * 109.47690 * 179.43212 * 17 15 14 34 34 H 1.09002 * 109.45874 * 179.68604 * 18 17 15 35 35 H 1.09002 * 109.44026 * 59.72248 * 18 17 15 36 36 H 1.09008 * 109.47526 * 300.29719 * 19 18 17 37 37 H 1.09001 * 109.48312 * 180.28579 * 19 18 17 38 38 H 1.09003 * 109.47010 * 180.56149 * 20 19 18 39 39 H 1.09004 * 109.46961 * 60.57098 * 20 19 18 40 40 H 1.08996 * 110.49722 * 335.99478 * 22 21 15 41 41 H 1.09007 * 110.49817 * 98.66794 * 22 21 15 42 42 H 1.08992 * 110.75275 * 279.37548 * 23 22 21 43 43 H 1.09003 * 110.90725 * 156.09159 * 23 22 21 44 44 H 1.09003 * 110.48631 * 203.52629 * 24 23 22 45 45 H 1.08999 * 110.59965 * 80.94157 * 24 23 22 46 46 H 1.08999 * 110.05952 * 238.31126 * 25 21 15 47 47 H 1.09008 * 110.05054 * 359.74986 * 25 21 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0465 1.4001 5 1 1.4466 2.6527 -0.7001 6 1 3.5467 1.4402 -0.7000 7 6 2.0045 -1.1940 -0.0005 8 1 1.4646 -2.1293 -0.0005 9 6 3.5116 -1.1940 0.0000 10 6 4.0216 -2.6365 -0.0001 11 16 5.8356 -2.6364 -0.0001 12 8 6.3342 -2.1459 -1.2371 13 8 6.3343 -2.1462 1.2369 14 7 6.2489 -4.2400 -0.0010 15 6 5.9124 -5.0826 -1.1513 16 1 5.8183 -4.4610 -2.0417 17 6 4.5865 -5.8001 -0.8875 18 6 4.7236 -6.6834 0.3542 19 6 5.8218 -7.7235 0.1237 20 6 7.1512 -7.0112 -0.1371 21 6 7.0164 -6.1152 -1.3659 22 6 8.3527 -5.4010 -1.6402 23 6 9.0461 -6.2906 -2.7026 24 6 7.8640 -6.7408 -3.5970 25 6 6.7037 -6.9677 -2.6049 26 1 -0.4850 0.8400 -0.0004 27 1 3.8752 -0.6796 -0.8894 28 1 3.8746 -0.6807 0.8905 29 1 3.6580 -3.1505 0.8896 30 1 3.6587 -3.1500 -0.8904 31 1 6.7137 -4.6215 0.7601 32 1 3.8005 -5.0630 -0.7240 33 1 4.3310 -6.4193 -1.7475 34 1 3.7777 -7.1903 0.5455 35 1 4.9841 -6.0645 1.2127 36 1 5.5642 -8.3392 -0.7381 37 1 5.9152 -8.3554 1.0070 38 1 7.9320 -7.7516 -0.3112 39 1 7.4137 -6.4033 0.7288 40 1 8.1768 -4.4008 -2.0357 41 1 8.9533 -5.3531 -0.7317 42 1 9.5248 -7.1502 -2.2338 43 1 9.7695 -5.7148 -3.2799 44 1 8.1094 -7.6678 -4.1155 45 1 7.6064 -5.9608 -4.3135 46 1 6.6478 -8.0209 -2.3296 47 1 5.7618 -6.6477 -3.0507 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000366107456.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:04:09 Heat of formation + Delta-G solvation = -109.851848 kcal Electronic energy + Delta-G solvation = -26256.888186 eV Core-core repulsion = 22757.960362 eV Total energy + Delta-G solvation = -3498.927824 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 315.166 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -40.64370 -36.67917 -36.09295 -35.53993 -33.95737 -33.66436 -31.51798 -30.53522 -29.32784 -28.65074 -25.97623 -24.27482 -22.81286 -21.73885 -21.09956 -20.40068 -18.96845 -18.35500 -17.64809 -16.95254 -16.42288 -15.63577 -15.58982 -15.32554 -14.96837 -14.75366 -14.30762 -13.91612 -13.66505 -13.57387 -13.45086 -12.82574 -12.80824 -12.53964 -12.26366 -11.89399 -11.73185 -11.70327 -11.59315 -11.50068 -11.35740 -11.27433 -11.21794 -11.18644 -11.14063 -10.95138 -10.67797 -10.46456 -10.41359 -10.40510 -10.14206 -10.03088 -9.71175 -9.42559 -9.09438 -8.66058 -6.16466 -4.17519 0.71050 3.06446 3.26687 3.34041 3.38419 4.15286 4.30360 4.33138 4.36091 4.43513 4.65207 4.78483 4.85909 4.88615 5.00618 5.13397 5.15328 5.23054 5.25931 5.31734 5.39273 5.43322 5.47588 5.51539 5.54707 5.59481 5.63249 5.72238 5.77984 5.78644 5.87228 5.95101 5.95339 6.05649 6.07563 6.13633 6.18491 6.21935 6.29556 6.37427 6.40627 6.82465 6.93810 7.12320 7.55163 8.36786 8.84727 9.43475 10.95936 Molecular weight = 315.17amu Principal moments of inertia in cm(-1) A = 0.020417 B = 0.003924 C = 0.003713 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1371.046352 B = 7134.124625 C = 7539.151847 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.896 5.896 2 C 0.072 3.928 3 Si 0.868 3.132 4 H -0.271 1.271 5 H -0.282 1.282 6 H -0.262 1.262 7 C -0.518 4.518 8 H 0.078 0.922 9 C -0.007 4.007 10 C -0.585 4.585 11 S 2.588 3.412 12 O -0.966 6.966 13 O -0.970 6.970 14 N -1.116 6.116 15 C 0.161 3.839 16 H 0.093 0.907 17 C -0.150 4.150 18 C -0.117 4.117 19 C -0.121 4.121 20 C -0.105 4.105 21 C -0.059 4.059 22 C -0.118 4.118 23 C -0.124 4.124 24 C -0.126 4.126 25 C -0.115 4.115 26 H 0.266 0.734 27 H 0.032 0.968 28 H 0.027 0.973 29 H 0.127 0.873 30 H 0.125 0.875 31 H 0.411 0.589 32 H 0.076 0.924 33 H 0.076 0.924 34 H 0.062 0.938 35 H 0.065 0.935 36 H 0.064 0.936 37 H 0.059 0.941 38 H 0.063 0.937 39 H 0.062 0.938 40 H 0.076 0.924 41 H 0.064 0.936 42 H 0.063 0.937 43 H 0.063 0.937 44 H 0.061 0.939 45 H 0.066 0.934 46 H 0.069 0.931 47 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.148 -17.888 -3.390 23.684 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.534 5.534 2 C -0.131 4.131 3 Si 0.695 3.305 4 H -0.197 1.197 5 H -0.208 1.208 6 H -0.186 1.186 7 C -0.557 4.557 8 H 0.096 0.904 9 C -0.046 4.046 10 C -0.717 4.717 11 S 2.685 3.315 12 O -0.956 6.956 13 O -0.960 6.960 14 N -0.873 5.873 15 C 0.053 3.947 16 H 0.111 0.889 17 C -0.189 4.189 18 C -0.155 4.155 19 C -0.158 4.158 20 C -0.143 4.143 21 C -0.060 4.060 22 C -0.155 4.155 23 C -0.162 4.162 24 C -0.163 4.163 25 C -0.153 4.153 26 H 0.076 0.924 27 H 0.050 0.950 28 H 0.045 0.955 29 H 0.145 0.855 30 H 0.144 0.856 31 H 0.246 0.754 32 H 0.094 0.906 33 H 0.095 0.905 34 H 0.081 0.919 35 H 0.084 0.916 36 H 0.082 0.918 37 H 0.078 0.922 38 H 0.082 0.918 39 H 0.081 0.919 40 H 0.095 0.905 41 H 0.083 0.917 42 H 0.081 0.919 43 H 0.082 0.918 44 H 0.080 0.920 45 H 0.085 0.915 46 H 0.087 0.913 47 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 15.545 -16.965 -3.547 23.281 hybrid contribution -0.175 0.342 0.413 0.564 sum 15.370 -16.623 -3.133 22.855 Atomic orbital electron populations 1.69880 1.06201 1.27232 1.50074 1.24979 0.94806 0.99137 0.94153 0.86939 0.80718 0.83750 0.79130 1.19684 1.20756 1.18628 1.20844 0.87815 0.94875 1.52177 0.90414 1.19405 0.99907 0.87524 0.97782 1.30404 1.21443 1.09057 1.10838 1.05598 0.79060 0.72614 0.74207 1.93546 1.78317 1.78138 1.45615 1.93554 1.79185 1.78070 1.45202 1.55764 1.74359 1.29596 1.27598 1.20848 0.93717 0.91895 0.88201 0.88874 1.22280 0.97457 1.00001 0.99172 1.21456 0.98574 0.97253 0.98212 1.21599 0.94992 0.97842 1.01395 1.21579 0.97428 0.98206 0.97075 1.21107 0.94781 0.94591 0.95563 1.22466 0.94830 0.99364 0.98868 1.22494 0.97333 0.99200 0.97157 1.22391 0.95266 1.00969 0.97721 1.22294 0.98822 0.99700 0.94525 0.92398 0.94984 0.95480 0.85516 0.85635 0.75408 0.90563 0.90502 0.91909 0.91611 0.91766 0.92224 0.91815 0.91940 0.90530 0.91676 0.91865 0.91792 0.91993 0.91501 0.91257 0.91165 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.01 13.96 55.43 0.77 -26.24 16 2 C 0.07 2.07 5.47 -17.82 -0.10 1.97 16 3 Si 0.87 21.52 27.47 -169.99 -4.67 16.85 16 4 H -0.27 -6.58 7.11 56.52 0.40 -6.18 16 5 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 6 H -0.26 -6.29 6.54 56.52 0.37 -5.92 16 7 C -0.52 -14.39 9.66 -34.44 -0.33 -14.72 16 8 H 0.08 2.26 7.99 -52.49 -0.42 1.84 16 9 C -0.01 -0.16 4.05 -27.88 -0.11 -0.28 16 10 C -0.58 -10.57 5.15 37.16 0.19 -10.38 16 11 S 2.59 43.52 5.44 -107.50 -0.58 42.93 16 12 O -0.97 -18.73 17.39 -57.54 -1.00 -19.73 16 13 O -0.97 -19.05 18.08 -57.54 -1.04 -20.09 16 14 N -1.12 -13.57 4.26 -5.01 -0.02 -13.59 16 15 C 0.16 1.74 1.63 -68.07 -0.11 1.63 16 16 H 0.09 1.10 7.48 -51.93 -0.39 0.71 16 17 C -0.15 -1.50 5.38 -26.71 -0.14 -1.64 16 18 C -0.12 -1.07 5.76 -26.73 -0.15 -1.22 16 19 C -0.12 -0.94 5.70 -26.70 -0.15 -1.09 16 20 C -0.11 -0.84 4.21 -26.86 -0.11 -0.95 16 21 C -0.06 -0.53 0.42 -154.01 -0.06 -0.60 16 22 C -0.12 -1.16 5.52 -25.19 -0.14 -1.30 16 23 C -0.12 -1.03 6.91 -24.69 -0.17 -1.20 16 24 C -0.13 -1.01 6.84 -25.02 -0.17 -1.18 16 25 C -0.12 -0.93 5.06 -25.71 -0.13 -1.06 16 26 H 0.27 7.50 8.31 -40.82 -0.34 7.16 16 27 H 0.03 0.76 7.20 -51.93 -0.37 0.39 16 28 H 0.03 0.64 7.57 -51.93 -0.39 0.24 16 29 H 0.13 2.09 8.14 -51.93 -0.42 1.67 16 30 H 0.13 2.05 6.78 -51.93 -0.35 1.70 16 31 H 0.41 4.31 6.90 -34.48 -0.24 4.07 16 32 H 0.08 0.85 5.77 -51.93 -0.30 0.55 16 33 H 0.08 0.67 6.62 -51.93 -0.34 0.33 16 34 H 0.06 0.56 8.14 -51.93 -0.42 0.13 16 35 H 0.07 0.62 7.45 -51.93 -0.39 0.24 16 36 H 0.06 0.47 6.63 -51.92 -0.34 0.12 16 37 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 38 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 39 H 0.06 0.51 6.64 -51.93 -0.34 0.16 16 40 H 0.08 0.91 7.84 -51.93 -0.41 0.50 16 41 H 0.06 0.62 7.83 -51.92 -0.41 0.21 16 42 H 0.06 0.48 8.14 -51.93 -0.42 0.05 16 43 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 44 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 45 H 0.07 0.57 8.14 -51.93 -0.42 0.14 16 46 H 0.07 0.50 6.48 -51.93 -0.34 0.16 16 47 H 0.07 0.57 6.47 -51.92 -0.34 0.23 16 LS Contribution 358.17 15.07 5.40 5.40 Total: -1.00 -33.47 358.17 -10.76 -44.23 By element: Atomic # 1 Polarization: 10.16 SS G_CDS: -7.92 Total: 2.24 kcal Atomic # 6 Polarization: -30.31 SS G_CDS: -1.70 Total: -32.01 kcal Atomic # 7 Polarization: -40.58 SS G_CDS: 0.75 Total: -39.83 kcal Atomic # 8 Polarization: -37.78 SS G_CDS: -2.04 Total: -39.82 kcal Atomic # 14 Polarization: 21.52 SS G_CDS: -4.67 Total: 16.85 kcal Atomic # 16 Polarization: 43.52 SS G_CDS: -0.58 Total: 42.93 kcal Total LS contribution 5.40 Total: 5.40 kcal Total: -33.47 -10.76 -44.23 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000366107456.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -65.618 kcal (2) G-P(sol) polarization free energy of solvation -33.471 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.088 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.763 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.234 kcal (6) G-S(sol) free energy of system = (1) + (5) -109.852 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds