Wall clock time and date at job start Tue Mar 31 2020 12:04:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86798 * 119.99973 * 2 1 4 4 H 1.48506 * 109.47297 * 89.99710 * 3 2 1 5 5 H 1.48503 * 109.47261 * 329.99891 * 3 2 1 6 6 H 1.48500 * 109.47454 * 209.99884 * 3 2 1 7 7 C 1.37877 * 120.00089 * 180.02562 * 2 1 3 8 8 H 1.07991 * 120.00203 * 359.97438 * 7 2 1 9 9 C 1.50708 * 120.00008 * 180.02562 * 7 2 1 10 10 C 1.53000 * 109.46973 * 179.97438 * 9 7 2 11 11 S 1.81397 * 109.46664 * 179.97438 * 10 9 7 12 12 O 1.42098 * 110.54544 * 291.62390 * 11 10 9 13 13 O 1.42100 * 110.54384 * 68.38136 * 11 10 9 14 14 N 1.65606 * 104.44910 * 180.02562 * 11 10 9 15 15 C 1.46500 * 119.99960 * 64.99739 * 14 11 10 16 16 H 1.09001 * 109.46762 * 25.00651 * 15 14 11 17 17 C 1.53054 * 109.47021 * 265.01009 * 15 14 11 18 18 C 1.52995 * 109.44342 * 299.42142 * 17 15 14 19 19 C 1.52998 * 109.54532 * 299.71385 * 18 17 15 20 20 C 1.53057 * 109.43817 * 60.28835 * 19 18 17 21 21 C 1.52678 * 109.46868 * 144.99539 * 15 14 11 22 22 C 1.53980 * 109.80952 * 299.67814 * 21 15 14 23 23 C 1.54950 * 104.13543 * 217.32667 * 22 21 15 24 24 C 1.54917 * 102.78415 * 37.70169 * 23 22 21 25 25 C 1.53612 * 109.97246 * 182.33134 * 21 15 14 26 26 H 0.96997 * 119.99848 * 0.02562 * 1 2 3 27 27 H 1.08994 * 109.46697 * 300.00254 * 9 7 2 28 28 H 1.09000 * 109.47083 * 59.99509 * 9 7 2 29 29 H 1.08996 * 109.47332 * 299.99701 * 10 9 7 30 30 H 1.08996 * 109.46646 * 60.00565 * 10 9 7 31 31 H 0.96996 * 120.00236 * 245.00251 * 14 11 10 32 32 H 1.08993 * 109.48065 * 59.41302 * 17 15 14 33 33 H 1.09001 * 109.47690 * 179.43212 * 17 15 14 34 34 H 1.09002 * 109.45874 * 179.68604 * 18 17 15 35 35 H 1.09002 * 109.44026 * 59.72248 * 18 17 15 36 36 H 1.09008 * 109.47526 * 300.29719 * 19 18 17 37 37 H 1.09001 * 109.48312 * 180.28579 * 19 18 17 38 38 H 1.09003 * 109.47010 * 180.56149 * 20 19 18 39 39 H 1.09004 * 109.46961 * 60.57098 * 20 19 18 40 40 H 1.08996 * 110.49722 * 335.99478 * 22 21 15 41 41 H 1.09007 * 110.49817 * 98.66794 * 22 21 15 42 42 H 1.08992 * 110.75275 * 279.37548 * 23 22 21 43 43 H 1.09003 * 110.90725 * 156.09159 * 23 22 21 44 44 H 1.09003 * 110.48631 * 203.52629 * 24 23 22 45 45 H 1.08999 * 110.59965 * 80.94157 * 24 23 22 46 46 H 1.08999 * 110.05952 * 238.31126 * 25 21 15 47 47 H 1.09008 * 110.05054 * 359.74986 * 25 21 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0465 1.4001 5 1 1.4466 2.6527 -0.7001 6 1 3.5467 1.4402 -0.7000 7 6 2.0045 -1.1940 -0.0005 8 1 1.4646 -2.1293 -0.0005 9 6 3.5116 -1.1940 0.0000 10 6 4.0216 -2.6365 -0.0001 11 16 5.8356 -2.6364 -0.0001 12 8 6.3342 -2.1459 -1.2371 13 8 6.3343 -2.1462 1.2369 14 7 6.2489 -4.2400 -0.0010 15 6 5.9124 -5.0826 -1.1513 16 1 5.8183 -4.4610 -2.0417 17 6 4.5865 -5.8001 -0.8875 18 6 4.7236 -6.6834 0.3542 19 6 5.8218 -7.7235 0.1237 20 6 7.1512 -7.0112 -0.1371 21 6 7.0164 -6.1152 -1.3659 22 6 8.3527 -5.4010 -1.6402 23 6 9.0461 -6.2906 -2.7026 24 6 7.8640 -6.7408 -3.5970 25 6 6.7037 -6.9677 -2.6049 26 1 -0.4850 0.8400 -0.0004 27 1 3.8752 -0.6796 -0.8894 28 1 3.8746 -0.6807 0.8905 29 1 3.6580 -3.1505 0.8896 30 1 3.6587 -3.1500 -0.8904 31 1 6.7137 -4.6215 0.7601 32 1 3.8005 -5.0630 -0.7240 33 1 4.3310 -6.4193 -1.7475 34 1 3.7777 -7.1903 0.5455 35 1 4.9841 -6.0645 1.2127 36 1 5.5642 -8.3392 -0.7381 37 1 5.9152 -8.3554 1.0070 38 1 7.9320 -7.7516 -0.3112 39 1 7.4137 -6.4033 0.7288 40 1 8.1768 -4.4008 -2.0357 41 1 8.9533 -5.3531 -0.7317 42 1 9.5248 -7.1502 -2.2338 43 1 9.7695 -5.7148 -3.2799 44 1 8.1094 -7.6678 -4.1155 45 1 7.6064 -5.9608 -4.3135 46 1 6.6478 -8.0209 -2.3296 47 1 5.7618 -6.6477 -3.0507 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000366107456.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:04:08 Heat of formation + Delta-G solvation = -131.974051 kcal Electronic energy + Delta-G solvation = -26257.847477 eV Core-core repulsion = 22757.960362 eV Total energy + Delta-G solvation = -3499.887115 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 315.166 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -41.39559 -38.16457 -37.03959 -36.84896 -35.90401 -34.55675 -33.49726 -31.27122 -30.11201 -29.37168 -27.88866 -24.99666 -23.65136 -23.18996 -22.16958 -21.13059 -20.26989 -19.37598 -19.20507 -18.43813 -17.43551 -17.05804 -16.53997 -16.40483 -16.35232 -15.78558 -15.64768 -15.25123 -14.86407 -14.55363 -14.39576 -14.22052 -13.79334 -13.61827 -13.44274 -13.23629 -13.20538 -13.08976 -13.04262 -12.87898 -12.49615 -12.34415 -12.21937 -12.05242 -11.99579 -11.94358 -11.87172 -11.70472 -11.65744 -11.39745 -11.30861 -11.08557 -11.01417 -10.84665 -10.77863 -10.18203 -8.36775 -6.42113 -0.69545 1.31008 1.33032 1.42953 1.81729 2.28989 2.75568 2.97237 3.23861 3.56927 3.63803 3.73187 3.89477 4.02738 4.10581 4.14280 4.20981 4.28466 4.41557 4.46726 4.54448 4.59665 4.62764 4.67459 4.72692 4.81098 4.85630 4.93568 5.00424 5.05986 5.09199 5.14323 5.15570 5.18447 5.23350 5.31326 5.35217 5.39726 5.43403 5.47049 5.49079 5.56645 5.62920 5.69873 6.16421 6.17187 6.63736 7.22227 8.78747 Molecular weight = 315.17amu Principal moments of inertia in cm(-1) A = 0.020417 B = 0.003924 C = 0.003713 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1371.046352 B = 7134.124625 C = 7539.151847 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.939 5.939 2 C 0.015 3.985 3 Si 0.922 3.078 4 H -0.261 1.261 5 H -0.273 1.273 6 H -0.251 1.251 7 C -0.525 4.525 8 H 0.051 0.949 9 C -0.016 4.016 10 C -0.589 4.589 11 S 2.617 3.383 12 O -0.991 6.991 13 O -0.996 6.996 14 N -1.097 6.097 15 C 0.154 3.846 16 H 0.081 0.919 17 C -0.151 4.151 18 C -0.120 4.120 19 C -0.116 4.116 20 C -0.104 4.104 21 C -0.054 4.054 22 C -0.123 4.123 23 C -0.121 4.121 24 C -0.127 4.127 25 C -0.114 4.114 26 H 0.270 0.730 27 H 0.031 0.969 28 H 0.029 0.971 29 H 0.140 0.860 30 H 0.139 0.861 31 H 0.423 0.577 32 H 0.061 0.939 33 H 0.091 0.909 34 H 0.065 0.935 35 H 0.060 0.940 36 H 0.073 0.927 37 H 0.069 0.931 38 H 0.077 0.923 39 H 0.060 0.940 40 H 0.050 0.950 41 H 0.067 0.933 42 H 0.077 0.923 43 H 0.061 0.939 44 H 0.076 0.924 45 H 0.056 0.944 46 H 0.085 0.915 47 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.867 -19.465 -3.442 25.986 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.579 5.579 2 C -0.184 4.184 3 Si 0.745 3.255 4 H -0.186 1.186 5 H -0.198 1.198 6 H -0.175 1.175 7 C -0.564 4.564 8 H 0.069 0.931 9 C -0.055 4.055 10 C -0.720 4.720 11 S 2.713 3.287 12 O -0.980 6.980 13 O -0.986 6.986 14 N -0.859 5.859 15 C 0.047 3.953 16 H 0.099 0.901 17 C -0.190 4.190 18 C -0.157 4.157 19 C -0.153 4.153 20 C -0.142 4.142 21 C -0.056 4.056 22 C -0.161 4.161 23 C -0.159 4.159 24 C -0.164 4.164 25 C -0.152 4.152 26 H 0.079 0.921 27 H 0.049 0.951 28 H 0.047 0.953 29 H 0.159 0.841 30 H 0.158 0.842 31 H 0.260 0.740 32 H 0.080 0.920 33 H 0.110 0.890 34 H 0.083 0.917 35 H 0.078 0.922 36 H 0.092 0.908 37 H 0.087 0.913 38 H 0.096 0.904 39 H 0.079 0.921 40 H 0.069 0.931 41 H 0.086 0.914 42 H 0.095 0.905 43 H 0.080 0.920 44 H 0.095 0.905 45 H 0.075 0.925 46 H 0.103 0.897 47 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 17.263 -18.546 -3.590 25.590 hybrid contribution -0.721 0.723 0.406 1.099 sum 16.542 -17.823 -3.184 24.524 Atomic orbital electron populations 1.70002 1.07824 1.28346 1.51723 1.25838 0.95603 1.02885 0.94025 0.86063 0.79925 0.79624 0.79859 1.18574 1.19831 1.17461 1.21154 0.90133 0.93880 1.51203 0.93111 1.19365 0.97331 0.91165 0.97678 1.30405 1.23255 1.05957 1.12375 1.04508 0.77812 0.73430 0.72964 1.93517 1.78351 1.79458 1.46706 1.93512 1.79304 1.79496 1.46282 1.55330 1.73813 1.28078 1.28639 1.21065 0.95228 0.92038 0.86962 0.90089 1.22291 0.96258 1.00007 1.00448 1.21487 0.99434 0.97471 0.97350 1.21570 0.94046 0.97434 1.02260 1.21590 0.98088 0.98249 0.96229 1.21094 0.93396 0.94236 0.96846 1.22483 0.95679 0.98488 0.99448 1.22488 0.97361 0.99278 0.96723 1.22403 0.95084 1.01345 0.97576 1.22314 0.98756 1.00292 0.93869 0.92130 0.95089 0.95312 0.84144 0.84245 0.73990 0.92012 0.89017 0.91652 0.92171 0.90837 0.91276 0.90436 0.92126 0.93123 0.91402 0.90470 0.91990 0.90533 0.92511 0.89670 0.91312 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -57.73 13.96 21.45 0.30 -57.43 16 2 C 0.02 0.88 5.47 84.65 0.46 1.34 16 3 Si 0.92 44.08 27.47 68.60 1.88 45.96 16 4 H -0.26 -11.97 7.11 99.48 0.71 -11.27 16 5 H -0.27 -12.58 7.11 99.48 0.71 -11.88 16 6 H -0.25 -11.44 6.54 99.48 0.65 -10.79 16 7 C -0.52 -29.63 9.66 25.60 0.25 -29.38 16 8 H 0.05 3.05 7.99 -2.92 -0.02 3.02 16 9 C -0.02 -0.77 4.05 29.85 0.12 -0.65 16 10 C -0.59 -21.13 5.15 71.98 0.37 -20.76 16 11 S 2.62 86.49 5.44 -56.49 -0.31 86.19 16 12 O -0.99 -38.10 17.39 -127.65 -2.22 -40.32 16 13 O -1.00 -38.34 18.08 -127.65 -2.31 -40.65 16 14 N -1.10 -25.52 4.26 -169.76 -0.72 -26.24 16 15 C 0.15 3.16 1.63 44.90 0.07 3.23 16 16 H 0.08 1.88 7.48 -2.39 -0.02 1.86 16 17 C -0.15 -2.80 5.38 30.61 0.16 -2.63 16 18 C -0.12 -1.93 5.76 30.59 0.18 -1.76 16 19 C -0.12 -1.44 5.70 30.61 0.17 -1.26 16 20 C -0.10 -1.36 4.21 30.51 0.13 -1.23 16 21 C -0.05 -0.87 0.42 -51.86 -0.02 -0.89 16 22 C -0.12 -2.26 5.52 31.59 0.17 -2.09 16 23 C -0.12 -1.77 6.91 31.92 0.22 -1.55 16 24 C -0.13 -1.76 6.84 31.71 0.22 -1.54 16 25 C -0.11 -1.56 5.06 31.26 0.16 -1.40 16 26 H 0.27 15.45 8.31 -92.71 -0.77 14.68 16 27 H 0.03 1.46 7.20 -2.39 -0.02 1.44 16 28 H 0.03 1.34 7.57 -2.39 -0.02 1.32 16 29 H 0.14 4.58 8.14 -2.39 -0.02 4.56 16 30 H 0.14 4.54 6.78 -2.39 -0.02 4.53 16 31 H 0.42 8.21 6.90 -96.74 -0.67 7.54 16 32 H 0.06 1.32 5.77 -2.39 -0.01 1.31 16 33 H 0.09 1.43 6.62 -2.39 -0.02 1.41 16 34 H 0.06 1.03 8.14 -2.39 -0.02 1.01 16 35 H 0.06 1.03 7.45 -2.39 -0.02 1.01 16 36 H 0.07 0.80 6.63 -2.38 -0.02 0.79 16 37 H 0.07 0.77 8.14 -2.39 -0.02 0.75 16 38 H 0.08 0.85 8.14 -2.39 -0.02 0.83 16 39 H 0.06 0.82 6.64 -2.39 -0.02 0.81 16 40 H 0.05 1.19 7.84 -2.39 -0.02 1.17 16 41 H 0.07 1.18 7.83 -2.38 -0.02 1.16 16 42 H 0.08 0.93 8.14 -2.39 -0.02 0.91 16 43 H 0.06 0.93 8.14 -2.39 -0.02 0.91 16 44 H 0.08 0.85 8.14 -2.39 -0.02 0.83 16 45 H 0.06 0.90 8.14 -2.39 -0.02 0.88 16 46 H 0.08 0.92 6.48 -2.39 -0.02 0.90 16 47 H 0.07 0.97 6.47 -2.38 -0.02 0.95 16 Total: -1.00 -71.93 358.17 -0.48 -72.41 By element: Atomic # 1 Polarization: 20.43 SS G_CDS: 0.23 Total: 20.66 kcal Atomic # 6 Polarization: -63.24 SS G_CDS: 2.67 Total: -60.58 kcal Atomic # 7 Polarization: -83.25 SS G_CDS: -0.42 Total: -83.67 kcal Atomic # 8 Polarization: -76.44 SS G_CDS: -4.53 Total: -80.97 kcal Atomic # 14 Polarization: 44.08 SS G_CDS: 1.88 Total: 45.96 kcal Atomic # 16 Polarization: 86.49 SS G_CDS: -0.31 Total: 86.19 kcal Total: -71.93 -0.48 -72.41 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000366107456.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -59.566 kcal (2) G-P(sol) polarization free energy of solvation -71.933 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -131.499 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.475 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.408 kcal (6) G-S(sol) free energy of system = (1) + (5) -131.974 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds