Wall clock time and date at job start Tue Mar 31 2020 12:04:08
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.31514 * 1
3 3 Si 1.86798 * 119.99973 * 2 1
4 4 H 1.48506 * 109.47297 * 89.99710 * 3 2 1
5 5 H 1.48503 * 109.47261 * 329.99891 * 3 2 1
6 6 H 1.48500 * 109.47454 * 209.99884 * 3 2 1
7 7 C 1.37877 * 120.00089 * 180.02562 * 2 1 3
8 8 H 1.07991 * 120.00203 * 359.97438 * 7 2 1
9 9 C 1.50708 * 120.00008 * 180.02562 * 7 2 1
10 10 C 1.53000 * 109.46973 * 179.97438 * 9 7 2
11 11 S 1.81397 * 109.46664 * 179.97438 * 10 9 7
12 12 O 1.42098 * 110.54544 * 291.62390 * 11 10 9
13 13 O 1.42100 * 110.54384 * 68.38136 * 11 10 9
14 14 N 1.65606 * 104.44910 * 180.02562 * 11 10 9
15 15 C 1.46500 * 119.99960 * 64.99739 * 14 11 10
16 16 H 1.09001 * 109.46762 * 25.00651 * 15 14 11
17 17 C 1.53054 * 109.47021 * 265.01009 * 15 14 11
18 18 C 1.52995 * 109.44342 * 299.42142 * 17 15 14
19 19 C 1.52998 * 109.54532 * 299.71385 * 18 17 15
20 20 C 1.53057 * 109.43817 * 60.28835 * 19 18 17
21 21 C 1.52678 * 109.46868 * 144.99539 * 15 14 11
22 22 C 1.53980 * 109.80952 * 299.67814 * 21 15 14
23 23 C 1.54950 * 104.13543 * 217.32667 * 22 21 15
24 24 C 1.54917 * 102.78415 * 37.70169 * 23 22 21
25 25 C 1.53612 * 109.97246 * 182.33134 * 21 15 14
26 26 H 0.96997 * 119.99848 * 0.02562 * 1 2 3
27 27 H 1.08994 * 109.46697 * 300.00254 * 9 7 2
28 28 H 1.09000 * 109.47083 * 59.99509 * 9 7 2
29 29 H 1.08996 * 109.47332 * 299.99701 * 10 9 7
30 30 H 1.08996 * 109.46646 * 60.00565 * 10 9 7
31 31 H 0.96996 * 120.00236 * 245.00251 * 14 11 10
32 32 H 1.08993 * 109.48065 * 59.41302 * 17 15 14
33 33 H 1.09001 * 109.47690 * 179.43212 * 17 15 14
34 34 H 1.09002 * 109.45874 * 179.68604 * 18 17 15
35 35 H 1.09002 * 109.44026 * 59.72248 * 18 17 15
36 36 H 1.09008 * 109.47526 * 300.29719 * 19 18 17
37 37 H 1.09001 * 109.48312 * 180.28579 * 19 18 17
38 38 H 1.09003 * 109.47010 * 180.56149 * 20 19 18
39 39 H 1.09004 * 109.46961 * 60.57098 * 20 19 18
40 40 H 1.08996 * 110.49722 * 335.99478 * 22 21 15
41 41 H 1.09007 * 110.49817 * 98.66794 * 22 21 15
42 42 H 1.08992 * 110.75275 * 279.37548 * 23 22 21
43 43 H 1.09003 * 110.90725 * 156.09159 * 23 22 21
44 44 H 1.09003 * 110.48631 * 203.52629 * 24 23 22
45 45 H 1.08999 * 110.59965 * 80.94157 * 24 23 22
46 46 H 1.08999 * 110.05952 * 238.31126 * 25 21 15
47 47 H 1.09008 * 110.05054 * 359.74986 * 25 21 15
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3151 0.0000 0.0000
3 14 2.2491 1.6177 0.0000
4 1 2.4966 2.0465 1.4001
5 1 1.4466 2.6527 -0.7001
6 1 3.5467 1.4402 -0.7000
7 6 2.0045 -1.1940 -0.0005
8 1 1.4646 -2.1293 -0.0005
9 6 3.5116 -1.1940 0.0000
10 6 4.0216 -2.6365 -0.0001
11 16 5.8356 -2.6364 -0.0001
12 8 6.3342 -2.1459 -1.2371
13 8 6.3343 -2.1462 1.2369
14 7 6.2489 -4.2400 -0.0010
15 6 5.9124 -5.0826 -1.1513
16 1 5.8183 -4.4610 -2.0417
17 6 4.5865 -5.8001 -0.8875
18 6 4.7236 -6.6834 0.3542
19 6 5.8218 -7.7235 0.1237
20 6 7.1512 -7.0112 -0.1371
21 6 7.0164 -6.1152 -1.3659
22 6 8.3527 -5.4010 -1.6402
23 6 9.0461 -6.2906 -2.7026
24 6 7.8640 -6.7408 -3.5970
25 6 6.7037 -6.9677 -2.6049
26 1 -0.4850 0.8400 -0.0004
27 1 3.8752 -0.6796 -0.8894
28 1 3.8746 -0.6807 0.8905
29 1 3.6580 -3.1505 0.8896
30 1 3.6587 -3.1500 -0.8904
31 1 6.7137 -4.6215 0.7601
32 1 3.8005 -5.0630 -0.7240
33 1 4.3310 -6.4193 -1.7475
34 1 3.7777 -7.1903 0.5455
35 1 4.9841 -6.0645 1.2127
36 1 5.5642 -8.3392 -0.7381
37 1 5.9152 -8.3554 1.0070
38 1 7.9320 -7.7516 -0.3112
39 1 7.4137 -6.4033 0.7288
40 1 8.1768 -4.4008 -2.0357
41 1 8.9533 -5.3531 -0.7317
42 1 9.5248 -7.1502 -2.2338
43 1 9.7695 -5.7148 -3.2799
44 1 8.1094 -7.6678 -4.1155
45 1 7.6064 -5.9608 -4.3135
46 1 6.6478 -8.0209 -2.3296
47 1 5.7618 -6.6477 -3.0507
RHF calculation, no. of doubly occupied orbitals= 58
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000366107456.mol2 47
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 12:04:08
Heat of formation + Delta-G solvation = -131.974051 kcal
Electronic energy + Delta-G solvation = -26257.847477 eV
Core-core repulsion = 22757.960362 eV
Total energy + Delta-G solvation = -3499.887115 eV
No. of doubly occupied orbitals = 58
Molecular weight
(most abundant/longest-lived isotopes) = 315.166 amu
Computer time = 0.98 seconds
Orbital eigenvalues (eV)
-41.39559 -38.16457 -37.03959 -36.84896 -35.90401 -34.55675 -33.49726 -31.27122
-30.11201 -29.37168 -27.88866 -24.99666 -23.65136 -23.18996 -22.16958 -21.13059
-20.26989 -19.37598 -19.20507 -18.43813 -17.43551 -17.05804 -16.53997 -16.40483
-16.35232 -15.78558 -15.64768 -15.25123 -14.86407 -14.55363 -14.39576 -14.22052
-13.79334 -13.61827 -13.44274 -13.23629 -13.20538 -13.08976 -13.04262 -12.87898
-12.49615 -12.34415 -12.21937 -12.05242 -11.99579 -11.94358 -11.87172 -11.70472
-11.65744 -11.39745 -11.30861 -11.08557 -11.01417 -10.84665 -10.77863 -10.18203
-8.36775 -6.42113 -0.69545 1.31008 1.33032 1.42953 1.81729 2.28989
2.75568 2.97237 3.23861 3.56927 3.63803 3.73187 3.89477 4.02738
4.10581 4.14280 4.20981 4.28466 4.41557 4.46726 4.54448 4.59665
4.62764 4.67459 4.72692 4.81098 4.85630 4.93568 5.00424 5.05986
5.09199 5.14323 5.15570 5.18447 5.23350 5.31326 5.35217 5.39726
5.43403 5.47049 5.49079 5.56645 5.62920 5.69873 6.16421 6.17187
6.63736 7.22227 8.78747
Molecular weight = 315.17amu
Principal moments of inertia in cm(-1)
A = 0.020417 B = 0.003924 C = 0.003713
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1371.046352 B = 7134.124625 C = 7539.151847
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.939 5.939
2 C 0.015 3.985
3 Si 0.922 3.078
4 H -0.261 1.261
5 H -0.273 1.273
6 H -0.251 1.251
7 C -0.525 4.525
8 H 0.051 0.949
9 C -0.016 4.016
10 C -0.589 4.589
11 S 2.617 3.383
12 O -0.991 6.991
13 O -0.996 6.996
14 N -1.097 6.097
15 C 0.154 3.846
16 H 0.081 0.919
17 C -0.151 4.151
18 C -0.120 4.120
19 C -0.116 4.116
20 C -0.104 4.104
21 C -0.054 4.054
22 C -0.123 4.123
23 C -0.121 4.121
24 C -0.127 4.127
25 C -0.114 4.114
26 H 0.270 0.730
27 H 0.031 0.969
28 H 0.029 0.971
29 H 0.140 0.860
30 H 0.139 0.861
31 H 0.423 0.577
32 H 0.061 0.939
33 H 0.091 0.909
34 H 0.065 0.935
35 H 0.060 0.940
36 H 0.073 0.927
37 H 0.069 0.931
38 H 0.077 0.923
39 H 0.060 0.940
40 H 0.050 0.950
41 H 0.067 0.933
42 H 0.077 0.923
43 H 0.061 0.939
44 H 0.076 0.924
45 H 0.056 0.944
46 H 0.085 0.915
47 H 0.068 0.932
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 16.867 -19.465 -3.442 25.986
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.579 5.579
2 C -0.184 4.184
3 Si 0.745 3.255
4 H -0.186 1.186
5 H -0.198 1.198
6 H -0.175 1.175
7 C -0.564 4.564
8 H 0.069 0.931
9 C -0.055 4.055
10 C -0.720 4.720
11 S 2.713 3.287
12 O -0.980 6.980
13 O -0.986 6.986
14 N -0.859 5.859
15 C 0.047 3.953
16 H 0.099 0.901
17 C -0.190 4.190
18 C -0.157 4.157
19 C -0.153 4.153
20 C -0.142 4.142
21 C -0.056 4.056
22 C -0.161 4.161
23 C -0.159 4.159
24 C -0.164 4.164
25 C -0.152 4.152
26 H 0.079 0.921
27 H 0.049 0.951
28 H 0.047 0.953
29 H 0.159 0.841
30 H 0.158 0.842
31 H 0.260 0.740
32 H 0.080 0.920
33 H 0.110 0.890
34 H 0.083 0.917
35 H 0.078 0.922
36 H 0.092 0.908
37 H 0.087 0.913
38 H 0.096 0.904
39 H 0.079 0.921
40 H 0.069 0.931
41 H 0.086 0.914
42 H 0.095 0.905
43 H 0.080 0.920
44 H 0.095 0.905
45 H 0.075 0.925
46 H 0.103 0.897
47 H 0.087 0.913
Dipole moment (debyes) X Y Z Total
from point charges 17.263 -18.546 -3.590 25.590
hybrid contribution -0.721 0.723 0.406 1.099
sum 16.542 -17.823 -3.184 24.524
Atomic orbital electron populations
1.70002 1.07824 1.28346 1.51723 1.25838 0.95603 1.02885 0.94025
0.86063 0.79925 0.79624 0.79859 1.18574 1.19831 1.17461 1.21154
0.90133 0.93880 1.51203 0.93111 1.19365 0.97331 0.91165 0.97678
1.30405 1.23255 1.05957 1.12375 1.04508 0.77812 0.73430 0.72964
1.93517 1.78351 1.79458 1.46706 1.93512 1.79304 1.79496 1.46282
1.55330 1.73813 1.28078 1.28639 1.21065 0.95228 0.92038 0.86962
0.90089 1.22291 0.96258 1.00007 1.00448 1.21487 0.99434 0.97471
0.97350 1.21570 0.94046 0.97434 1.02260 1.21590 0.98088 0.98249
0.96229 1.21094 0.93396 0.94236 0.96846 1.22483 0.95679 0.98488
0.99448 1.22488 0.97361 0.99278 0.96723 1.22403 0.95084 1.01345
0.97576 1.22314 0.98756 1.00292 0.93869 0.92130 0.95089 0.95312
0.84144 0.84245 0.73990 0.92012 0.89017 0.91652 0.92171 0.90837
0.91276 0.90436 0.92126 0.93123 0.91402 0.90470 0.91990 0.90533
0.92511 0.89670 0.91312
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 18.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.94 -57.73 13.96 21.45 0.30 -57.43 16
2 C 0.02 0.88 5.47 84.65 0.46 1.34 16
3 Si 0.92 44.08 27.47 68.60 1.88 45.96 16
4 H -0.26 -11.97 7.11 99.48 0.71 -11.27 16
5 H -0.27 -12.58 7.11 99.48 0.71 -11.88 16
6 H -0.25 -11.44 6.54 99.48 0.65 -10.79 16
7 C -0.52 -29.63 9.66 25.60 0.25 -29.38 16
8 H 0.05 3.05 7.99 -2.92 -0.02 3.02 16
9 C -0.02 -0.77 4.05 29.85 0.12 -0.65 16
10 C -0.59 -21.13 5.15 71.98 0.37 -20.76 16
11 S 2.62 86.49 5.44 -56.49 -0.31 86.19 16
12 O -0.99 -38.10 17.39 -127.65 -2.22 -40.32 16
13 O -1.00 -38.34 18.08 -127.65 -2.31 -40.65 16
14 N -1.10 -25.52 4.26 -169.76 -0.72 -26.24 16
15 C 0.15 3.16 1.63 44.90 0.07 3.23 16
16 H 0.08 1.88 7.48 -2.39 -0.02 1.86 16
17 C -0.15 -2.80 5.38 30.61 0.16 -2.63 16
18 C -0.12 -1.93 5.76 30.59 0.18 -1.76 16
19 C -0.12 -1.44 5.70 30.61 0.17 -1.26 16
20 C -0.10 -1.36 4.21 30.51 0.13 -1.23 16
21 C -0.05 -0.87 0.42 -51.86 -0.02 -0.89 16
22 C -0.12 -2.26 5.52 31.59 0.17 -2.09 16
23 C -0.12 -1.77 6.91 31.92 0.22 -1.55 16
24 C -0.13 -1.76 6.84 31.71 0.22 -1.54 16
25 C -0.11 -1.56 5.06 31.26 0.16 -1.40 16
26 H 0.27 15.45 8.31 -92.71 -0.77 14.68 16
27 H 0.03 1.46 7.20 -2.39 -0.02 1.44 16
28 H 0.03 1.34 7.57 -2.39 -0.02 1.32 16
29 H 0.14 4.58 8.14 -2.39 -0.02 4.56 16
30 H 0.14 4.54 6.78 -2.39 -0.02 4.53 16
31 H 0.42 8.21 6.90 -96.74 -0.67 7.54 16
32 H 0.06 1.32 5.77 -2.39 -0.01 1.31 16
33 H 0.09 1.43 6.62 -2.39 -0.02 1.41 16
34 H 0.06 1.03 8.14 -2.39 -0.02 1.01 16
35 H 0.06 1.03 7.45 -2.39 -0.02 1.01 16
36 H 0.07 0.80 6.63 -2.38 -0.02 0.79 16
37 H 0.07 0.77 8.14 -2.39 -0.02 0.75 16
38 H 0.08 0.85 8.14 -2.39 -0.02 0.83 16
39 H 0.06 0.82 6.64 -2.39 -0.02 0.81 16
40 H 0.05 1.19 7.84 -2.39 -0.02 1.17 16
41 H 0.07 1.18 7.83 -2.38 -0.02 1.16 16
42 H 0.08 0.93 8.14 -2.39 -0.02 0.91 16
43 H 0.06 0.93 8.14 -2.39 -0.02 0.91 16
44 H 0.08 0.85 8.14 -2.39 -0.02 0.83 16
45 H 0.06 0.90 8.14 -2.39 -0.02 0.88 16
46 H 0.08 0.92 6.48 -2.39 -0.02 0.90 16
47 H 0.07 0.97 6.47 -2.38 -0.02 0.95 16
Total: -1.00 -71.93 358.17 -0.48 -72.41
By element:
Atomic # 1 Polarization: 20.43 SS G_CDS: 0.23 Total: 20.66 kcal
Atomic # 6 Polarization: -63.24 SS G_CDS: 2.67 Total: -60.58 kcal
Atomic # 7 Polarization: -83.25 SS G_CDS: -0.42 Total: -83.67 kcal
Atomic # 8 Polarization: -76.44 SS G_CDS: -4.53 Total: -80.97 kcal
Atomic # 14 Polarization: 44.08 SS G_CDS: 1.88 Total: 45.96 kcal
Atomic # 16 Polarization: 86.49 SS G_CDS: -0.31 Total: 86.19 kcal
Total: -71.93 -0.48 -72.41 kcal
The number of atoms in the molecule is 47
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000366107456.mol2 47
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -59.566 kcal
(2) G-P(sol) polarization free energy of solvation -71.933 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -131.499 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.475 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.408 kcal
(6) G-S(sol) free energy of system = (1) + (5) -131.974 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.98 seconds