Wall clock time and date at job start Tue Mar 31 2020 12:04:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86797 * 120.00353 * 2 1 4 4 H 1.48506 * 109.47294 * 240.00246 * 3 2 1 5 5 H 1.48503 * 109.46954 * 359.97438 * 3 2 1 6 6 H 1.48503 * 109.47431 * 119.99843 * 3 2 1 7 7 C 1.37880 * 119.99913 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00010 * 179.97438 * 7 2 1 9 9 C 1.50701 * 119.99861 * 0.02562 * 7 2 1 10 10 C 1.52997 * 109.47212 * 179.97438 * 9 7 2 11 11 S 1.81396 * 109.47360 * 179.97438 * 10 9 7 12 12 O 1.42094 * 110.54259 * 291.62586 * 11 10 9 13 13 O 1.42106 * 110.54167 * 68.37612 * 11 10 9 14 14 N 1.65606 * 104.45103 * 179.97438 * 11 10 9 15 15 C 1.46498 * 119.99850 * 65.00095 * 14 11 10 16 16 H 1.09000 * 109.47080 * 334.99795 * 15 14 11 17 17 C 1.53061 * 109.46927 * 94.98867 * 15 14 11 18 18 C 1.52999 * 109.44081 * 179.43176 * 17 15 14 19 19 C 1.53004 * 109.54371 * 299.70900 * 18 17 15 20 20 C 1.53058 * 109.43620 * 60.29095 * 19 18 17 21 21 C 1.52678 * 109.46770 * 214.99979 * 15 14 11 22 22 C 1.53979 * 109.80720 * 59.67131 * 21 15 14 23 23 C 1.54955 * 104.13332 * 217.32888 * 22 21 15 24 24 C 1.54915 * 102.78326 * 37.69877 * 23 22 21 25 25 C 1.53613 * 109.97048 * 302.32464 * 21 15 14 26 26 H 0.97002 * 119.99768 * 359.97438 * 1 2 3 27 27 H 1.09002 * 109.47060 * 299.99817 * 9 7 2 28 28 H 1.09001 * 109.47380 * 59.99905 * 9 7 2 29 29 H 1.09002 * 109.47153 * 299.99998 * 10 9 7 30 30 H 1.08998 * 109.47533 * 59.99628 * 10 9 7 31 31 H 0.96995 * 120.00185 * 244.99918 * 14 11 10 32 32 H 1.08997 * 109.47535 * 299.41692 * 17 15 14 33 33 H 1.09000 * 109.47919 * 59.43763 * 17 15 14 34 34 H 1.08997 * 109.46058 * 179.68616 * 18 17 15 35 35 H 1.09001 * 109.45717 * 59.72707 * 18 17 15 36 36 H 1.09006 * 109.47688 * 300.30451 * 19 18 17 37 37 H 1.09000 * 109.48382 * 180.28952 * 19 18 17 38 38 H 1.08998 * 109.47371 * 180.56419 * 20 19 18 39 39 H 1.09007 * 109.47154 * 60.57407 * 20 19 18 40 40 H 1.08998 * 110.50165 * 335.99183 * 22 21 15 41 41 H 1.09004 * 110.50164 * 98.66954 * 22 21 15 42 42 H 1.08990 * 110.75188 * 279.37257 * 23 22 21 43 43 H 1.08997 * 110.90944 * 156.09147 * 23 22 21 44 44 H 1.09005 * 110.48438 * 203.52518 * 24 23 22 45 45 H 1.09000 * 110.60263 * 80.94715 * 24 23 22 46 46 H 1.09005 * 110.05192 * 238.30849 * 25 21 15 47 47 H 1.08996 * 110.05413 * 359.79548 * 25 21 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 3.1029 1.6963 -1.2126 5 1 1.2842 2.7464 -0.0006 6 1 3.1030 1.6964 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2509 -2.4992 0.0005 10 6 2.2451 -3.6621 0.0005 11 16 1.3381 -5.2330 0.0013 12 8 0.6645 -5.4193 1.2385 13 8 0.6637 -5.4200 -1.2355 14 7 2.5202 -6.3928 0.0005 15 6 3.4194 -6.5229 1.1497 16 1 3.4803 -5.5688 1.6733 17 6 2.8795 -7.5933 2.1013 18 6 3.8265 -7.7387 3.2942 19 6 5.2124 -8.1576 2.7995 20 6 5.7587 -7.0888 1.8499 21 6 4.8096 -6.9270 0.6649 22 6 5.3567 -5.8588 -0.2997 23 6 6.1207 -6.6742 -1.3733 24 6 5.2282 -7.9278 -1.5511 25 6 4.7281 -8.2419 -0.1251 26 1 -0.4850 0.8401 0.0004 27 1 0.6239 -2.5567 0.8903 28 1 0.6246 -2.5571 -0.8897 29 1 2.8718 -3.6044 -0.8895 30 1 2.8718 -3.6044 0.8904 31 1 2.6173 -6.9859 -0.7608 32 1 1.8914 -7.2997 2.4555 33 1 2.8090 -8.5453 1.5751 34 1 3.4394 -8.4970 3.9748 35 1 3.9006 -6.7853 3.8173 36 1 5.1378 -9.1086 2.2719 37 1 5.8848 -8.2659 3.6505 38 1 6.7418 -7.3914 1.4892 39 1 5.8427 -6.1401 2.3803 40 1 4.5386 -5.3006 -0.7550 41 1 6.0359 -5.1848 0.2224 42 1 7.1112 -6.9531 -1.0141 43 1 6.1932 -6.1163 -2.3069 44 1 5.8132 -8.7603 -1.9422 45 1 4.3881 -7.7102 -2.2107 46 1 5.3656 -8.9957 0.3370 47 1 3.6971 -8.5939 -0.1597 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000366107457.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:04:13 Heat of formation + Delta-G solvation = -114.486423 kcal Electronic energy + Delta-G solvation = -26281.290268 eV Core-core repulsion = 22782.161474 eV Total energy + Delta-G solvation = -3499.128794 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 315.166 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -40.59837 -36.56729 -35.72885 -35.38665 -34.23328 -33.88661 -31.16681 -30.39254 -28.92233 -28.73261 -25.59365 -24.40694 -22.58327 -21.75876 -21.40528 -20.35020 -18.94402 -18.49245 -17.41591 -16.75249 -16.25420 -15.51811 -15.38180 -15.29480 -14.74635 -14.55475 -14.38746 -14.18477 -13.58789 -13.51448 -13.30036 -12.91587 -12.75241 -12.50510 -11.84322 -11.76411 -11.63092 -11.55946 -11.48510 -11.39915 -11.30893 -11.24539 -11.13146 -11.05993 -10.94942 -10.92103 -10.67928 -10.53671 -10.41648 -10.37055 -10.29661 -10.04565 -9.73167 -9.37984 -8.95849 -8.49419 -6.11643 -4.17198 0.83286 3.17869 3.27329 3.32273 3.33951 4.24731 4.29024 4.37349 4.43457 4.50541 4.74831 4.83002 4.89674 4.92709 5.03012 5.15460 5.18146 5.23602 5.28570 5.34084 5.43227 5.48671 5.53258 5.54685 5.66285 5.68657 5.75445 5.75942 5.80893 5.84214 5.91253 5.96662 6.02424 6.06242 6.09349 6.18935 6.19269 6.25485 6.39679 6.45816 6.51973 7.17842 7.30942 7.37418 7.81066 8.18390 8.85915 9.47440 10.99409 Molecular weight = 315.17amu Principal moments of inertia in cm(-1) A = 0.015459 B = 0.004094 C = 0.003896 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1810.782437 B = 6837.061717 C = 7184.640109 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.891 5.891 2 C 0.058 3.942 3 Si 0.899 3.101 4 H -0.275 1.275 5 H -0.285 1.285 6 H -0.275 1.275 7 C -0.520 4.520 8 H 0.061 0.939 9 C 0.029 3.971 10 C -0.591 4.591 11 S 2.590 3.410 12 O -0.965 6.965 13 O -0.970 6.970 14 N -1.121 6.121 15 C 0.167 3.833 16 H 0.084 0.916 17 C -0.139 4.139 18 C -0.118 4.118 19 C -0.122 4.122 20 C -0.104 4.104 21 C -0.064 4.064 22 C -0.123 4.123 23 C -0.123 4.123 24 C -0.127 4.127 25 C -0.118 4.118 26 H 0.265 0.735 27 H 0.033 0.967 28 H 0.032 0.968 29 H 0.120 0.880 30 H 0.117 0.883 31 H 0.411 0.589 32 H 0.081 0.919 33 H 0.067 0.933 34 H 0.063 0.937 35 H 0.065 0.935 36 H 0.063 0.937 37 H 0.060 0.940 38 H 0.065 0.935 39 H 0.066 0.934 40 H 0.074 0.926 41 H 0.068 0.932 42 H 0.063 0.937 43 H 0.065 0.935 44 H 0.061 0.939 45 H 0.066 0.934 46 H 0.067 0.933 47 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.513 -17.857 2.222 22.504 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.529 5.529 2 C -0.144 4.144 3 Si 0.727 3.273 4 H -0.201 1.201 5 H -0.211 1.211 6 H -0.201 1.201 7 C -0.560 4.560 8 H 0.079 0.921 9 C -0.010 4.010 10 C -0.724 4.724 11 S 2.687 3.313 12 O -0.955 6.955 13 O -0.960 6.960 14 N -0.877 5.877 15 C 0.059 3.941 16 H 0.102 0.898 17 C -0.178 4.178 18 C -0.156 4.156 19 C -0.159 4.159 20 C -0.143 4.143 21 C -0.065 4.065 22 C -0.160 4.160 23 C -0.160 4.160 24 C -0.165 4.165 25 C -0.155 4.155 26 H 0.075 0.925 27 H 0.051 0.949 28 H 0.051 0.949 29 H 0.139 0.861 30 H 0.136 0.864 31 H 0.245 0.755 32 H 0.099 0.901 33 H 0.086 0.914 34 H 0.081 0.919 35 H 0.083 0.917 36 H 0.082 0.918 37 H 0.079 0.921 38 H 0.084 0.916 39 H 0.084 0.916 40 H 0.093 0.907 41 H 0.087 0.913 42 H 0.082 0.918 43 H 0.084 0.916 44 H 0.080 0.920 45 H 0.084 0.916 46 H 0.086 0.914 47 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 12.364 -17.827 2.377 21.825 hybrid contribution 1.108 1.023 -0.346 1.547 sum 13.471 -16.804 2.031 21.633 Atomic orbital electron populations 1.69945 1.06118 1.27287 1.49512 1.25058 0.94951 0.99492 0.94914 0.86543 0.79509 0.82600 0.78687 1.20096 1.21073 1.20088 1.20960 0.92998 0.89779 1.52215 0.92115 1.18943 0.92661 0.90558 0.98817 1.30473 1.13726 1.18270 1.09936 1.05616 0.74795 0.76662 0.74198 1.93540 1.71450 1.84933 1.45554 1.93549 1.71759 1.85370 1.45333 1.55919 1.52559 1.51822 1.27390 1.20655 0.88426 0.99402 0.85568 0.89801 1.22132 1.00168 0.99409 0.96091 1.21508 0.94853 1.01798 0.97483 1.21620 0.96635 0.98881 0.98806 1.21585 0.97935 0.99490 0.95244 1.21203 0.94115 0.95650 0.95554 1.22527 1.00025 0.97146 0.96319 1.22465 0.98362 0.96296 0.98884 1.22419 0.99402 0.97776 0.96885 1.22307 1.01597 0.96655 0.94956 0.92484 0.94875 0.94930 0.86144 0.86411 0.75504 0.90059 0.91435 0.91863 0.91658 0.91822 0.92135 0.91618 0.91573 0.90688 0.91288 0.91809 0.91645 0.92015 0.91569 0.91417 0.91255 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.51 13.29 55.43 0.74 -25.78 16 2 C 0.06 1.65 5.46 -17.82 -0.10 1.55 16 3 Si 0.90 21.17 29.54 -169.99 -5.02 16.15 16 4 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 5 H -0.29 -6.66 7.11 56.52 0.40 -6.25 16 6 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 7 C -0.52 -14.32 9.11 -34.44 -0.31 -14.64 16 8 H 0.06 1.58 7.74 -52.49 -0.41 1.17 16 9 C 0.03 0.75 4.98 -27.88 -0.14 0.61 16 10 C -0.59 -11.22 5.90 37.16 0.22 -11.01 16 11 S 2.59 46.33 5.38 -107.50 -0.58 45.75 16 12 O -0.96 -19.84 17.12 -57.54 -0.99 -20.82 16 13 O -0.97 -20.31 18.08 -57.54 -1.04 -21.35 16 14 N -1.12 -14.50 4.26 -5.01 -0.02 -14.52 16 15 C 0.17 1.92 1.62 -68.07 -0.11 1.81 16 16 H 0.08 1.00 7.15 -51.93 -0.37 0.63 16 17 C -0.14 -1.54 5.30 -26.70 -0.14 -1.68 16 18 C -0.12 -1.09 5.91 -26.73 -0.16 -1.25 16 19 C -0.12 -0.95 5.70 -26.70 -0.15 -1.11 16 20 C -0.10 -0.86 4.41 -26.86 -0.12 -0.98 16 21 C -0.06 -0.59 0.45 -154.01 -0.07 -0.66 16 22 C -0.12 -1.21 5.78 -25.19 -0.15 -1.35 16 23 C -0.12 -1.06 6.91 -24.69 -0.17 -1.23 16 24 C -0.13 -1.06 6.82 -25.02 -0.17 -1.23 16 25 C -0.12 -0.99 4.40 -25.71 -0.11 -1.11 16 26 H 0.27 7.42 8.31 -40.82 -0.34 7.08 16 27 H 0.03 0.89 8.14 -51.93 -0.42 0.47 16 28 H 0.03 0.88 8.14 -51.93 -0.42 0.46 16 29 H 0.12 2.06 8.07 -51.92 -0.42 1.64 16 30 H 0.12 2.00 7.44 -51.92 -0.39 1.61 16 31 H 0.41 4.64 7.32 -34.48 -0.25 4.39 16 32 H 0.08 1.09 7.44 -51.93 -0.39 0.70 16 33 H 0.07 0.69 6.63 -51.93 -0.34 0.34 16 34 H 0.06 0.54 8.14 -51.93 -0.42 0.11 16 35 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 36 H 0.06 0.48 6.63 -51.93 -0.34 0.13 16 37 H 0.06 0.43 8.14 -51.93 -0.42 0.00 16 38 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 39 H 0.07 0.56 8.14 -51.92 -0.42 0.14 16 40 H 0.07 0.82 7.05 -51.93 -0.37 0.45 16 41 H 0.07 0.66 7.83 -51.93 -0.41 0.25 16 42 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 43 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 44 H 0.06 0.46 8.14 -51.93 -0.42 0.03 16 45 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 46 H 0.07 0.52 6.48 -51.93 -0.34 0.18 16 47 H 0.07 0.61 5.59 -51.93 -0.29 0.32 16 LS Contribution 364.97 15.07 5.50 5.50 Total: -1.00 -33.51 364.97 -11.18 -44.69 By element: Atomic # 1 Polarization: 10.75 SS G_CDS: -8.09 Total: 2.65 kcal Atomic # 6 Polarization: -30.59 SS G_CDS: -1.68 Total: -32.27 kcal Atomic # 7 Polarization: -41.02 SS G_CDS: 0.72 Total: -40.30 kcal Atomic # 8 Polarization: -40.15 SS G_CDS: -2.03 Total: -42.17 kcal Atomic # 14 Polarization: 21.17 SS G_CDS: -5.02 Total: 16.15 kcal Atomic # 16 Polarization: 46.33 SS G_CDS: -0.58 Total: 45.75 kcal Total LS contribution 5.50 Total: 5.50 kcal Total: -33.51 -11.18 -44.69 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000366107457.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -69.792 kcal (2) G-P(sol) polarization free energy of solvation -33.510 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -103.302 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.184 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.695 kcal (6) G-S(sol) free energy of system = (1) + (5) -114.486 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds