Wall clock time and date at job start Tue Mar 31 2020 12:04:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86797 * 120.00353 * 2 1 4 4 H 1.48506 * 109.47294 * 240.00246 * 3 2 1 5 5 H 1.48503 * 109.46954 * 359.97438 * 3 2 1 6 6 H 1.48503 * 109.47431 * 119.99843 * 3 2 1 7 7 C 1.37880 * 119.99913 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00010 * 179.97438 * 7 2 1 9 9 C 1.50701 * 119.99861 * 0.02562 * 7 2 1 10 10 C 1.52997 * 109.47212 * 179.97438 * 9 7 2 11 11 S 1.81396 * 109.47360 * 179.97438 * 10 9 7 12 12 O 1.42094 * 110.54259 * 291.62586 * 11 10 9 13 13 O 1.42106 * 110.54167 * 68.37612 * 11 10 9 14 14 N 1.65606 * 104.45103 * 179.97438 * 11 10 9 15 15 C 1.46498 * 119.99850 * 65.00095 * 14 11 10 16 16 H 1.09000 * 109.47080 * 334.99795 * 15 14 11 17 17 C 1.53061 * 109.46927 * 94.98867 * 15 14 11 18 18 C 1.52999 * 109.44081 * 179.43176 * 17 15 14 19 19 C 1.53004 * 109.54371 * 299.70900 * 18 17 15 20 20 C 1.53058 * 109.43620 * 60.29095 * 19 18 17 21 21 C 1.52678 * 109.46770 * 214.99979 * 15 14 11 22 22 C 1.53979 * 109.80720 * 59.67131 * 21 15 14 23 23 C 1.54955 * 104.13332 * 217.32888 * 22 21 15 24 24 C 1.54915 * 102.78326 * 37.69877 * 23 22 21 25 25 C 1.53613 * 109.97048 * 302.32464 * 21 15 14 26 26 H 0.97002 * 119.99768 * 359.97438 * 1 2 3 27 27 H 1.09002 * 109.47060 * 299.99817 * 9 7 2 28 28 H 1.09001 * 109.47380 * 59.99905 * 9 7 2 29 29 H 1.09002 * 109.47153 * 299.99998 * 10 9 7 30 30 H 1.08998 * 109.47533 * 59.99628 * 10 9 7 31 31 H 0.96995 * 120.00185 * 244.99918 * 14 11 10 32 32 H 1.08997 * 109.47535 * 299.41692 * 17 15 14 33 33 H 1.09000 * 109.47919 * 59.43763 * 17 15 14 34 34 H 1.08997 * 109.46058 * 179.68616 * 18 17 15 35 35 H 1.09001 * 109.45717 * 59.72707 * 18 17 15 36 36 H 1.09006 * 109.47688 * 300.30451 * 19 18 17 37 37 H 1.09000 * 109.48382 * 180.28952 * 19 18 17 38 38 H 1.08998 * 109.47371 * 180.56419 * 20 19 18 39 39 H 1.09007 * 109.47154 * 60.57407 * 20 19 18 40 40 H 1.08998 * 110.50165 * 335.99183 * 22 21 15 41 41 H 1.09004 * 110.50164 * 98.66954 * 22 21 15 42 42 H 1.08990 * 110.75188 * 279.37257 * 23 22 21 43 43 H 1.08997 * 110.90944 * 156.09147 * 23 22 21 44 44 H 1.09005 * 110.48438 * 203.52518 * 24 23 22 45 45 H 1.09000 * 110.60263 * 80.94715 * 24 23 22 46 46 H 1.09005 * 110.05192 * 238.30849 * 25 21 15 47 47 H 1.08996 * 110.05413 * 359.79548 * 25 21 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 3.1029 1.6963 -1.2126 5 1 1.2842 2.7464 -0.0006 6 1 3.1030 1.6964 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2509 -2.4992 0.0005 10 6 2.2451 -3.6621 0.0005 11 16 1.3381 -5.2330 0.0013 12 8 0.6645 -5.4193 1.2385 13 8 0.6637 -5.4200 -1.2355 14 7 2.5202 -6.3928 0.0005 15 6 3.4194 -6.5229 1.1497 16 1 3.4803 -5.5688 1.6733 17 6 2.8795 -7.5933 2.1013 18 6 3.8265 -7.7387 3.2942 19 6 5.2124 -8.1576 2.7995 20 6 5.7587 -7.0888 1.8499 21 6 4.8096 -6.9270 0.6649 22 6 5.3567 -5.8588 -0.2997 23 6 6.1207 -6.6742 -1.3733 24 6 5.2282 -7.9278 -1.5511 25 6 4.7281 -8.2419 -0.1251 26 1 -0.4850 0.8401 0.0004 27 1 0.6239 -2.5567 0.8903 28 1 0.6246 -2.5571 -0.8897 29 1 2.8718 -3.6044 -0.8895 30 1 2.8718 -3.6044 0.8904 31 1 2.6173 -6.9859 -0.7608 32 1 1.8914 -7.2997 2.4555 33 1 2.8090 -8.5453 1.5751 34 1 3.4394 -8.4970 3.9748 35 1 3.9006 -6.7853 3.8173 36 1 5.1378 -9.1086 2.2719 37 1 5.8848 -8.2659 3.6505 38 1 6.7418 -7.3914 1.4892 39 1 5.8427 -6.1401 2.3803 40 1 4.5386 -5.3006 -0.7550 41 1 6.0359 -5.1848 0.2224 42 1 7.1112 -6.9531 -1.0141 43 1 6.1932 -6.1163 -2.3069 44 1 5.8132 -8.7603 -1.9422 45 1 4.3881 -7.7102 -2.2107 46 1 5.3656 -8.9957 0.3370 47 1 3.6971 -8.5939 -0.1597 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000366107457.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:04:12 Heat of formation + Delta-G solvation = -136.275136 kcal Electronic energy + Delta-G solvation = -26282.235097 eV Core-core repulsion = 22782.161474 eV Total energy + Delta-G solvation = -3500.073624 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 315.166 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -41.37890 -38.15791 -37.01982 -36.46327 -35.90328 -35.22522 -33.14402 -31.11839 -29.74647 -29.49180 -27.59589 -25.14065 -23.63208 -23.43456 -22.16518 -21.06868 -20.31009 -19.48135 -18.98672 -18.21365 -17.53989 -17.01635 -16.59011 -16.47100 -16.21660 -15.79282 -15.27184 -15.11311 -14.88234 -14.49248 -14.32621 -14.20474 -13.86489 -13.73017 -13.46533 -13.20579 -13.11165 -12.94011 -12.90792 -12.79706 -12.41981 -12.28399 -12.19264 -12.14011 -12.03858 -11.99477 -11.83602 -11.76451 -11.61870 -11.43883 -11.26334 -11.07391 -11.01400 -10.81473 -10.63995 -10.16749 -8.25866 -6.40034 -0.67775 1.40590 1.44066 1.52227 1.84770 2.38015 2.79257 3.07563 3.26089 3.54632 3.64394 3.78514 3.97499 4.04710 4.11804 4.16719 4.21529 4.27616 4.39285 4.42570 4.59620 4.61878 4.68482 4.72499 4.76007 4.82507 4.87433 4.96877 5.05666 5.14914 5.16685 5.19307 5.23399 5.26063 5.28634 5.32776 5.34610 5.38267 5.42897 5.48793 5.58013 5.63300 5.68020 5.70111 6.05813 6.15675 6.73191 7.30162 8.86340 Molecular weight = 315.17amu Principal moments of inertia in cm(-1) A = 0.015459 B = 0.004094 C = 0.003896 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1810.782437 B = 6837.061717 C = 7184.640109 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C -0.003 4.003 3 Si 0.973 3.027 4 H -0.263 1.263 5 H -0.284 1.284 6 H -0.262 1.262 7 C -0.539 4.539 8 H 0.076 0.924 9 C 0.022 3.978 10 C -0.587 4.587 11 S 2.615 3.385 12 O -0.993 6.993 13 O -1.002 7.002 14 N -1.100 6.100 15 C 0.157 3.843 16 H 0.078 0.922 17 C -0.139 4.139 18 C -0.118 4.118 19 C -0.117 4.117 20 C -0.103 4.103 21 C -0.057 4.057 22 C -0.130 4.130 23 C -0.120 4.120 24 C -0.128 4.128 25 C -0.117 4.117 26 H 0.267 0.733 27 H 0.006 0.994 28 H 0.004 0.996 29 H 0.141 0.859 30 H 0.139 0.861 31 H 0.422 0.578 32 H 0.052 0.948 33 H 0.078 0.922 34 H 0.071 0.929 35 H 0.058 0.942 36 H 0.072 0.928 37 H 0.073 0.927 38 H 0.080 0.920 39 H 0.062 0.938 40 H 0.060 0.940 41 H 0.072 0.928 42 H 0.076 0.924 43 H 0.062 0.938 44 H 0.074 0.926 45 H 0.058 0.942 46 H 0.083 0.917 47 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.618 -18.775 2.431 25.191 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.574 5.574 2 C -0.201 4.201 3 Si 0.797 3.203 4 H -0.188 1.188 5 H -0.210 1.210 6 H -0.187 1.187 7 C -0.577 4.577 8 H 0.094 0.906 9 C -0.016 4.016 10 C -0.719 4.719 11 S 2.711 3.289 12 O -0.983 6.983 13 O -0.992 6.992 14 N -0.860 5.860 15 C 0.050 3.950 16 H 0.096 0.904 17 C -0.179 4.179 18 C -0.156 4.156 19 C -0.154 4.154 20 C -0.141 4.141 21 C -0.059 4.059 22 C -0.168 4.168 23 C -0.157 4.157 24 C -0.165 4.165 25 C -0.154 4.154 26 H 0.076 0.924 27 H 0.024 0.976 28 H 0.023 0.977 29 H 0.160 0.840 30 H 0.158 0.842 31 H 0.259 0.741 32 H 0.071 0.929 33 H 0.097 0.903 34 H 0.089 0.911 35 H 0.077 0.923 36 H 0.091 0.909 37 H 0.092 0.908 38 H 0.099 0.901 39 H 0.081 0.919 40 H 0.078 0.922 41 H 0.090 0.910 42 H 0.094 0.906 43 H 0.080 0.920 44 H 0.093 0.907 45 H 0.077 0.923 46 H 0.101 0.899 47 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 15.481 -18.753 2.580 24.454 hybrid contribution 0.137 1.234 -0.394 1.303 sum 15.619 -17.519 2.185 23.572 Atomic orbital electron populations 1.70099 1.08106 1.28380 1.50831 1.26107 0.95819 1.03842 0.94338 0.85379 0.78160 0.77333 0.79473 1.18787 1.20978 1.18706 1.21471 0.93953 0.90710 1.51610 0.90593 1.18795 0.93527 0.93098 0.96216 1.30351 1.12790 1.16700 1.12108 1.04597 0.74855 0.76600 0.72827 1.93505 1.72726 1.85339 1.46714 1.93497 1.73236 1.85843 1.46622 1.55426 1.51891 1.50212 1.28521 1.20946 0.89496 0.99578 0.84943 0.90359 1.22119 0.99264 0.99587 0.96883 1.21517 0.95501 1.01890 0.96679 1.21596 0.95592 0.98976 0.99256 1.21599 0.98208 0.99626 0.94681 1.21168 0.92541 0.96004 0.96143 1.22586 0.99871 0.97468 0.96882 1.22458 0.98833 0.96106 0.98323 1.22433 0.99309 0.98110 0.96695 1.22319 1.01732 0.96368 0.94994 0.92398 0.97594 0.97738 0.84050 0.84233 0.74121 0.92874 0.90323 0.91054 0.92290 0.90930 0.90808 0.90094 0.91905 0.92158 0.90957 0.90574 0.91971 0.90724 0.92306 0.89894 0.91700 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.21 13.29 21.45 0.28 -56.93 16 2 C 0.00 -0.15 5.46 84.66 0.46 0.31 16 3 Si 0.97 43.28 29.54 68.60 2.03 45.31 16 4 H -0.26 -11.11 7.11 99.48 0.71 -10.40 16 5 H -0.28 -12.49 7.11 99.48 0.71 -11.79 16 6 H -0.26 -11.05 7.11 99.48 0.71 -10.34 16 7 C -0.54 -29.92 9.11 25.60 0.23 -29.69 16 8 H 0.08 3.87 7.74 -2.91 -0.02 3.85 16 9 C 0.02 1.19 4.98 29.85 0.15 1.34 16 10 C -0.59 -22.49 5.90 71.98 0.42 -22.06 16 11 S 2.61 95.44 5.38 -56.49 -0.30 95.14 16 12 O -0.99 -42.11 17.12 -127.65 -2.19 -44.30 16 13 O -1.00 -42.97 18.08 -127.65 -2.31 -45.28 16 14 N -1.10 -27.87 4.26 -169.75 -0.72 -28.60 16 15 C 0.16 3.43 1.62 44.91 0.07 3.50 16 16 H 0.08 1.80 7.15 -2.39 -0.02 1.79 16 17 C -0.14 -2.96 5.30 30.61 0.16 -2.80 16 18 C -0.12 -1.96 5.91 30.60 0.18 -1.78 16 19 C -0.12 -1.47 5.70 30.61 0.17 -1.29 16 20 C -0.10 -1.39 4.41 30.51 0.13 -1.25 16 21 C -0.06 -0.93 0.45 -51.86 -0.02 -0.95 16 22 C -0.13 -2.30 5.78 31.59 0.18 -2.12 16 23 C -0.12 -1.77 6.91 31.92 0.22 -1.55 16 24 C -0.13 -1.80 6.82 31.70 0.22 -1.58 16 25 C -0.12 -1.64 4.40 31.25 0.14 -1.51 16 26 H 0.27 15.32 8.31 -92.71 -0.77 14.55 16 27 H 0.01 0.33 8.14 -2.39 -0.02 0.31 16 28 H 0.00 0.25 8.14 -2.39 -0.02 0.23 16 29 H 0.14 4.77 8.07 -2.39 -0.02 4.75 16 30 H 0.14 4.67 7.44 -2.39 -0.02 4.65 16 31 H 0.42 9.14 7.32 -96.75 -0.71 8.43 16 32 H 0.05 1.43 7.44 -2.39 -0.02 1.41 16 33 H 0.08 1.47 6.63 -2.39 -0.02 1.45 16 34 H 0.07 1.08 8.14 -2.39 -0.02 1.06 16 35 H 0.06 1.05 8.14 -2.39 -0.02 1.03 16 36 H 0.07 0.81 6.63 -2.38 -0.02 0.80 16 37 H 0.07 0.78 8.14 -2.39 -0.02 0.76 16 38 H 0.08 0.90 8.14 -2.39 -0.02 0.88 16 39 H 0.06 0.91 8.14 -2.38 -0.02 0.89 16 40 H 0.06 1.23 7.05 -2.39 -0.02 1.21 16 41 H 0.07 1.22 7.83 -2.38 -0.02 1.20 16 42 H 0.08 0.95 8.14 -2.39 -0.02 0.93 16 43 H 0.06 0.96 8.14 -2.39 -0.02 0.94 16 44 H 0.07 0.87 8.14 -2.38 -0.02 0.86 16 45 H 0.06 0.91 8.14 -2.39 -0.02 0.89 16 46 H 0.08 0.95 6.48 -2.38 -0.02 0.94 16 47 H 0.06 0.98 5.59 -2.39 -0.01 0.97 16 Total: -1.00 -73.59 364.97 -0.24 -73.83 By element: Atomic # 1 Polarization: 22.01 SS G_CDS: 0.24 Total: 22.25 kcal Atomic # 6 Polarization: -64.16 SS G_CDS: 2.73 Total: -61.44 kcal Atomic # 7 Polarization: -85.09 SS G_CDS: -0.44 Total: -85.52 kcal Atomic # 8 Polarization: -85.08 SS G_CDS: -4.49 Total: -89.57 kcal Atomic # 14 Polarization: 43.28 SS G_CDS: 2.03 Total: 45.31 kcal Atomic # 16 Polarization: 95.44 SS G_CDS: -0.30 Total: 95.14 kcal Total: -73.59 -0.24 -73.83 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000366107457.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -62.441 kcal (2) G-P(sol) polarization free energy of solvation -73.590 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -136.030 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.245 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.834 kcal (6) G-S(sol) free energy of system = (1) + (5) -136.275 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds