Wall clock time and date at job start Tue Mar 31 2020 12:07:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86800 * 120.00074 * 2 1 4 4 H 1.48499 * 109.47293 * 269.99846 * 3 2 1 5 5 H 1.48504 * 109.47104 * 30.00092 * 3 2 1 6 6 H 1.48495 * 109.47249 * 149.99839 * 3 2 1 7 7 C 1.37870 * 119.99883 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00310 * 179.97438 * 7 2 1 9 9 C 1.50706 * 120.00176 * 0.02562 * 7 2 1 10 10 C 1.52997 * 109.47238 * 180.02562 * 9 7 2 11 11 S 1.81399 * 109.47147 * 179.97438 * 10 9 7 12 12 O 1.42106 * 110.54352 * 291.62304 * 11 10 9 13 13 O 1.42104 * 110.53977 * 68.37293 * 11 10 9 14 14 N 1.65593 * 104.45079 * 179.97438 * 11 10 9 15 15 C 1.46934 * 120.62992 * 269.72371 * 14 11 10 16 16 C 1.53620 * 108.54333 * 126.36970 * 15 14 11 17 17 C 1.53037 * 109.24528 * 54.85469 * 16 15 14 18 18 C 1.52999 * 109.44997 * 178.49840 * 17 16 15 19 19 C 1.54264 * 110.02976 * 297.96763 * 18 17 16 20 20 C 1.54970 * 104.15848 * 217.13580 * 19 18 17 21 21 C 1.54880 * 102.77800 * 37.88793 * 20 19 18 22 22 C 1.53878 * 110.03254 * 180.75046 * 18 17 16 23 23 C 1.53044 * 109.53803 * 298.51187 * 17 16 15 24 24 C 1.46931 * 120.63291 * 90.00018 * 14 11 10 25 25 H 0.97004 * 119.99507 * 359.97438 * 1 2 3 26 26 H 1.09001 * 109.46953 * 299.99770 * 9 7 2 27 27 H 1.09000 * 109.47318 * 59.99368 * 9 7 2 28 28 H 1.09001 * 109.46832 * 299.99686 * 10 9 7 29 29 H 1.09004 * 109.47261 * 59.99705 * 10 9 7 30 30 H 1.09003 * 109.57919 * 246.19942 * 15 14 11 31 31 H 1.09001 * 109.58691 * 6.62338 * 15 14 11 32 32 H 1.08998 * 109.63334 * 294.85772 * 16 15 14 33 33 H 1.09001 * 109.43087 * 174.71951 * 16 15 14 34 34 H 1.09003 * 109.46226 * 58.52933 * 17 16 15 35 35 H 1.09004 * 110.02061 * 59.35915 * 18 17 16 36 36 H 1.08993 * 110.48786 * 335.78467 * 19 18 17 37 37 H 1.08998 * 110.48601 * 98.43148 * 19 18 17 38 38 H 1.09005 * 110.71909 * 279.57131 * 20 19 18 39 39 H 1.09002 * 110.92347 * 156.30183 * 20 19 18 40 40 H 1.08995 * 110.49248 * 203.40291 * 21 20 19 41 41 H 1.09000 * 110.60084 * 80.81929 * 21 20 19 42 42 H 1.08995 * 110.03135 * 238.56580 * 22 18 17 43 43 H 1.08997 * 110.03393 * 359.97438 * 22 18 17 44 44 H 1.09008 * 109.49199 * 301.41463 * 23 17 16 45 45 H 1.08997 * 109.49755 * 181.31747 * 23 17 16 46 46 H 1.09003 * 109.58098 * 353.37309 * 24 14 11 47 47 H 1.08997 * 109.58742 * 113.65852 * 24 14 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4968 2.0464 -1.4000 5 1 1.4467 2.6527 0.7001 6 1 3.5467 1.4402 0.7000 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2510 -2.4992 -0.0017 10 6 2.2452 -3.6621 -0.0015 11 16 1.3382 -5.2330 -0.0021 12 8 0.6637 -5.4199 1.2346 13 8 0.6647 -5.4194 -1.2394 14 7 2.5203 -6.3927 -0.0025 15 6 3.0505 -6.9208 -1.2670 16 6 4.5800 -6.7783 -1.2528 17 6 5.1388 -7.4622 -0.0030 18 6 6.6651 -7.3557 -0.0033 19 6 7.2455 -8.0861 -1.2318 20 6 8.5494 -8.7370 -0.7048 21 6 8.1540 -9.1885 0.7230 22 6 7.2426 -8.0560 1.2392 23 6 4.5802 -6.7790 1.2473 24 6 3.0547 -6.9175 1.2616 25 1 -0.4849 0.8401 0.0004 26 1 0.6240 -2.5575 0.8880 27 1 0.6246 -2.5563 -0.8919 28 1 2.8725 -3.6039 -0.8910 29 1 2.8713 -3.6047 0.8890 30 1 2.7795 -7.9720 -1.3660 31 1 2.6370 -6.3545 -2.1015 32 1 4.8494 -5.7222 -1.2409 33 1 4.9964 -7.2504 -2.1427 34 1 4.8481 -8.5128 -0.0032 35 1 6.9660 -6.3081 -0.0151 36 1 6.5529 -8.8506 -1.5836 37 1 7.4678 -7.3758 -2.0282 38 1 9.3579 -8.0067 -0.6690 39 1 8.8317 -9.5938 -1.3167 40 1 9.0390 -9.2827 1.3522 41 1 7.6087 -10.1318 0.6897 42 1 7.8244 -7.3485 1.8299 43 1 6.4355 -8.4714 1.8427 44 1 4.8496 -5.7228 1.2357 45 1 4.9968 -7.2514 2.1369 46 1 2.6439 -6.3488 2.0959 47 1 2.7820 -7.9676 1.3657 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000371071899.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:07:37 Heat of formation + Delta-G solvation = -110.086050 kcal Electronic energy + Delta-G solvation = -25362.220336 eV Core-core repulsion = 21863.282356 eV Total energy + Delta-G solvation = -3498.937980 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 315.166 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -39.68832 -37.30186 -36.63596 -35.41058 -33.88001 -32.89301 -31.25681 -31.14176 -28.85926 -28.15587 -25.59630 -23.83447 -23.41835 -21.69660 -20.73787 -20.43437 -19.65309 -18.53823 -17.58784 -16.53521 -15.94787 -15.85316 -15.56233 -15.34862 -14.56537 -14.51687 -14.40455 -13.95202 -13.74784 -13.59374 -13.49921 -13.32702 -12.55280 -12.49645 -12.37103 -11.74589 -11.69590 -11.56100 -11.47081 -11.38033 -11.34032 -11.26794 -11.14081 -11.13020 -11.07837 -10.95069 -10.85436 -10.51516 -10.41989 -10.37084 -10.31642 -10.25658 -9.72781 -9.28741 -8.71965 -8.50007 -6.12040 -4.17573 0.79266 3.05815 3.25977 3.32180 3.34920 4.29131 4.30322 4.36739 4.38606 4.43760 4.58985 4.63728 4.82036 4.85647 5.10805 5.14916 5.20047 5.23088 5.30337 5.32590 5.35464 5.39372 5.42870 5.51679 5.61680 5.62912 5.64786 5.65599 5.69474 5.76197 5.81048 5.81622 5.85926 5.95040 6.01067 6.07311 6.11313 6.17886 6.27394 6.37806 6.51566 6.74059 7.30987 7.37140 7.80993 8.18328 8.85853 9.47130 10.99022 Molecular weight = 315.17amu Principal moments of inertia in cm(-1) A = 0.015399 B = 0.003426 C = 0.003027 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1817.871493 B = 8170.298342 C = 9248.308150 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.891 5.891 2 C 0.057 3.943 3 Si 0.900 3.100 4 H -0.279 1.279 5 H -0.284 1.284 6 H -0.273 1.273 7 C -0.519 4.519 8 H 0.061 0.939 9 C 0.028 3.972 10 C -0.589 4.589 11 S 2.590 3.410 12 O -0.966 6.966 13 O -0.966 6.966 14 N -1.006 6.006 15 C 0.122 3.878 16 C -0.133 4.133 17 C -0.076 4.076 18 C -0.088 4.088 19 C -0.119 4.119 20 C -0.127 4.127 21 C -0.125 4.125 22 C -0.123 4.123 23 C -0.134 4.134 24 C 0.123 3.877 25 H 0.265 0.735 26 H 0.033 0.967 27 H 0.033 0.967 28 H 0.118 0.882 29 H 0.118 0.882 30 H 0.066 0.934 31 H 0.090 0.910 32 H 0.070 0.930 33 H 0.073 0.927 34 H 0.071 0.929 35 H 0.072 0.928 36 H 0.067 0.933 37 H 0.064 0.936 38 H 0.064 0.936 39 H 0.062 0.938 40 H 0.060 0.940 41 H 0.063 0.937 42 H 0.061 0.939 43 H 0.068 0.932 44 H 0.070 0.930 45 H 0.074 0.926 46 H 0.090 0.910 47 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.793 -18.790 -0.020 24.545 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.529 5.529 2 C -0.145 4.145 3 Si 0.727 3.273 4 H -0.205 1.205 5 H -0.210 1.210 6 H -0.198 1.198 7 C -0.559 4.559 8 H 0.079 0.921 9 C -0.011 4.011 10 C -0.722 4.722 11 S 2.689 3.311 12 O -0.956 6.956 13 O -0.956 6.956 14 N -0.842 5.842 15 C -0.003 4.003 16 C -0.172 4.172 17 C -0.094 4.094 18 C -0.107 4.107 19 C -0.157 4.157 20 C -0.164 4.164 21 C -0.163 4.163 22 C -0.160 4.160 23 C -0.173 4.173 24 C -0.003 4.003 25 H 0.075 0.925 26 H 0.051 0.949 27 H 0.051 0.949 28 H 0.136 0.864 29 H 0.136 0.864 30 H 0.084 0.916 31 H 0.109 0.891 32 H 0.088 0.912 33 H 0.091 0.909 34 H 0.089 0.911 35 H 0.090 0.910 36 H 0.085 0.915 37 H 0.082 0.918 38 H 0.083 0.917 39 H 0.081 0.919 40 H 0.079 0.921 41 H 0.081 0.919 42 H 0.080 0.920 43 H 0.086 0.914 44 H 0.088 0.912 45 H 0.093 0.907 46 H 0.108 0.892 47 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 14.673 -18.901 -0.011 23.927 hybrid contribution 1.108 1.291 0.006 1.702 sum 15.781 -17.609 -0.005 23.646 Atomic orbital electron populations 1.69961 1.06113 1.27174 1.49631 1.25070 0.94970 0.99529 0.94932 0.86474 0.79714 0.82891 0.78235 1.20463 1.20997 1.19769 1.21004 0.93038 0.89788 1.52055 0.92083 1.18959 0.92711 0.90637 0.98793 1.30491 1.13598 1.18193 1.09899 1.05699 0.74914 0.76441 0.74043 1.93530 1.71389 1.85258 1.45418 1.93529 1.71443 1.85265 1.45363 1.57964 1.58879 1.56125 1.11273 1.21442 0.93511 0.99982 0.85376 1.22110 0.95301 1.01731 0.98027 1.21184 0.93710 0.99697 0.94821 1.21836 0.94497 0.99839 0.94500 1.22455 0.96529 0.99353 0.97359 1.22511 0.97690 0.99998 0.96210 1.22352 0.99103 0.98456 0.96346 1.22264 0.98873 0.97384 0.97504 1.22079 0.95344 1.01800 0.98101 1.21344 0.93509 1.00046 0.85389 0.92536 0.94918 0.94918 0.86375 0.86382 0.91552 0.89122 0.91165 0.90854 0.91082 0.90967 0.91465 0.91753 0.91735 0.91924 0.92099 0.91854 0.92016 0.91372 0.91163 0.90729 0.89168 0.91584 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.64 13.29 55.43 0.74 -25.90 16 2 C 0.06 1.63 5.46 -17.82 -0.10 1.53 16 3 Si 0.90 21.27 29.54 -169.99 -5.02 16.25 16 4 H -0.28 -6.48 7.11 56.52 0.40 -6.07 16 5 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 6 H -0.27 -6.26 7.11 56.52 0.40 -5.86 16 7 C -0.52 -14.44 9.11 -34.44 -0.31 -14.75 16 8 H 0.06 1.61 7.74 -52.49 -0.41 1.20 16 9 C 0.03 0.72 4.98 -27.88 -0.14 0.58 16 10 C -0.59 -11.40 6.12 37.16 0.23 -11.18 16 11 S 2.59 47.58 5.41 -107.50 -0.58 46.99 16 12 O -0.97 -20.31 16.73 -57.54 -0.96 -21.27 16 13 O -0.97 -20.30 16.71 -57.54 -0.96 -21.26 16 14 N -1.01 -13.77 3.21 -113.27 -0.36 -14.13 16 15 C 0.12 1.41 6.34 -3.48 -0.02 1.39 16 16 C -0.13 -1.25 5.19 -26.39 -0.14 -1.38 16 17 C -0.08 -0.64 1.43 -90.58 -0.13 -0.77 16 18 C -0.09 -0.69 2.50 -89.50 -0.22 -0.91 16 19 C -0.12 -0.86 5.28 -25.03 -0.13 -0.99 16 20 C -0.13 -0.85 6.91 -24.70 -0.17 -1.02 16 21 C -0.12 -0.84 6.83 -25.08 -0.17 -1.01 16 22 C -0.12 -0.89 5.90 -25.61 -0.15 -1.04 16 23 C -0.13 -1.26 5.13 -26.61 -0.14 -1.40 16 24 C 0.12 1.42 6.31 -3.71 -0.02 1.39 16 25 H 0.26 7.41 8.31 -40.82 -0.34 7.07 16 26 H 0.03 0.89 8.14 -51.93 -0.42 0.47 16 27 H 0.03 0.89 8.14 -51.93 -0.42 0.47 16 28 H 0.12 2.07 8.14 -51.92 -0.42 1.64 16 29 H 0.12 2.07 8.14 -51.92 -0.42 1.65 16 30 H 0.07 0.69 8.14 -51.93 -0.42 0.26 16 31 H 0.09 1.11 7.09 -51.93 -0.37 0.75 16 32 H 0.07 0.71 8.14 -51.93 -0.42 0.28 16 33 H 0.07 0.58 7.18 -51.93 -0.37 0.21 16 34 H 0.07 0.59 8.13 -51.93 -0.42 0.17 16 35 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 36 H 0.07 0.48 7.72 -51.93 -0.40 0.08 16 37 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 38 H 0.06 0.44 8.14 -51.93 -0.42 0.01 16 39 H 0.06 0.39 8.14 -51.93 -0.42 -0.04 16 40 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 41 H 0.06 0.42 8.14 -51.93 -0.42 -0.01 16 42 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 43 H 0.07 0.49 6.38 -51.93 -0.33 0.15 16 44 H 0.07 0.71 8.14 -51.92 -0.42 0.28 16 45 H 0.07 0.59 6.48 -51.93 -0.34 0.25 16 46 H 0.09 1.11 7.10 -51.93 -0.37 0.74 16 47 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 LS Contribution 371.96 15.07 5.61 5.61 Total: -1.00 -33.69 371.96 -11.65 -45.34 By element: Atomic # 1 Polarization: 6.43 SS G_CDS: -8.48 Total: -2.05 kcal Atomic # 6 Polarization: -27.94 SS G_CDS: -1.62 Total: -29.56 kcal Atomic # 7 Polarization: -40.41 SS G_CDS: 0.37 Total: -40.04 kcal Atomic # 8 Polarization: -40.61 SS G_CDS: -1.92 Total: -42.53 kcal Atomic # 14 Polarization: 21.27 SS G_CDS: -5.02 Total: 16.25 kcal Atomic # 16 Polarization: 47.58 SS G_CDS: -0.58 Total: 46.99 kcal Total LS contribution 5.61 Total: 5.61 kcal Total: -33.69 -11.65 -45.34 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000371071899.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -64.747 kcal (2) G-P(sol) polarization free energy of solvation -33.686 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.433 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.653 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.339 kcal (6) G-S(sol) free energy of system = (1) + (5) -110.086 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds