Wall clock time and date at job start Tue Mar 31 2020 12:07:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86800 * 120.00074 * 2 1 4 4 H 1.48499 * 109.47293 * 269.99846 * 3 2 1 5 5 H 1.48504 * 109.47104 * 30.00092 * 3 2 1 6 6 H 1.48495 * 109.47249 * 149.99839 * 3 2 1 7 7 C 1.37870 * 119.99883 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00310 * 179.97438 * 7 2 1 9 9 C 1.50706 * 120.00176 * 0.02562 * 7 2 1 10 10 C 1.52997 * 109.47238 * 180.02562 * 9 7 2 11 11 S 1.81399 * 109.47147 * 179.97438 * 10 9 7 12 12 O 1.42106 * 110.54352 * 291.62304 * 11 10 9 13 13 O 1.42104 * 110.53977 * 68.37293 * 11 10 9 14 14 N 1.65593 * 104.45079 * 179.97438 * 11 10 9 15 15 C 1.46934 * 120.62992 * 269.72371 * 14 11 10 16 16 C 1.53620 * 108.54333 * 126.36970 * 15 14 11 17 17 C 1.53037 * 109.24528 * 54.85469 * 16 15 14 18 18 C 1.52999 * 109.44997 * 178.49840 * 17 16 15 19 19 C 1.54264 * 110.02976 * 297.96763 * 18 17 16 20 20 C 1.54970 * 104.15848 * 217.13580 * 19 18 17 21 21 C 1.54880 * 102.77800 * 37.88793 * 20 19 18 22 22 C 1.53878 * 110.03254 * 180.75046 * 18 17 16 23 23 C 1.53044 * 109.53803 * 298.51187 * 17 16 15 24 24 C 1.46931 * 120.63291 * 90.00018 * 14 11 10 25 25 H 0.97004 * 119.99507 * 359.97438 * 1 2 3 26 26 H 1.09001 * 109.46953 * 299.99770 * 9 7 2 27 27 H 1.09000 * 109.47318 * 59.99368 * 9 7 2 28 28 H 1.09001 * 109.46832 * 299.99686 * 10 9 7 29 29 H 1.09004 * 109.47261 * 59.99705 * 10 9 7 30 30 H 1.09003 * 109.57919 * 246.19942 * 15 14 11 31 31 H 1.09001 * 109.58691 * 6.62338 * 15 14 11 32 32 H 1.08998 * 109.63334 * 294.85772 * 16 15 14 33 33 H 1.09001 * 109.43087 * 174.71951 * 16 15 14 34 34 H 1.09003 * 109.46226 * 58.52933 * 17 16 15 35 35 H 1.09004 * 110.02061 * 59.35915 * 18 17 16 36 36 H 1.08993 * 110.48786 * 335.78467 * 19 18 17 37 37 H 1.08998 * 110.48601 * 98.43148 * 19 18 17 38 38 H 1.09005 * 110.71909 * 279.57131 * 20 19 18 39 39 H 1.09002 * 110.92347 * 156.30183 * 20 19 18 40 40 H 1.08995 * 110.49248 * 203.40291 * 21 20 19 41 41 H 1.09000 * 110.60084 * 80.81929 * 21 20 19 42 42 H 1.08995 * 110.03135 * 238.56580 * 22 18 17 43 43 H 1.08997 * 110.03393 * 359.97438 * 22 18 17 44 44 H 1.09008 * 109.49199 * 301.41463 * 23 17 16 45 45 H 1.08997 * 109.49755 * 181.31747 * 23 17 16 46 46 H 1.09003 * 109.58098 * 353.37309 * 24 14 11 47 47 H 1.08997 * 109.58742 * 113.65852 * 24 14 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4968 2.0464 -1.4000 5 1 1.4467 2.6527 0.7001 6 1 3.5467 1.4402 0.7000 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2510 -2.4992 -0.0017 10 6 2.2452 -3.6621 -0.0015 11 16 1.3382 -5.2330 -0.0021 12 8 0.6637 -5.4199 1.2346 13 8 0.6647 -5.4194 -1.2394 14 7 2.5203 -6.3927 -0.0025 15 6 3.0505 -6.9208 -1.2670 16 6 4.5800 -6.7783 -1.2528 17 6 5.1388 -7.4622 -0.0030 18 6 6.6651 -7.3557 -0.0033 19 6 7.2455 -8.0861 -1.2318 20 6 8.5494 -8.7370 -0.7048 21 6 8.1540 -9.1885 0.7230 22 6 7.2426 -8.0560 1.2392 23 6 4.5802 -6.7790 1.2473 24 6 3.0547 -6.9175 1.2616 25 1 -0.4849 0.8401 0.0004 26 1 0.6240 -2.5575 0.8880 27 1 0.6246 -2.5563 -0.8919 28 1 2.8725 -3.6039 -0.8910 29 1 2.8713 -3.6047 0.8890 30 1 2.7795 -7.9720 -1.3660 31 1 2.6370 -6.3545 -2.1015 32 1 4.8494 -5.7222 -1.2409 33 1 4.9964 -7.2504 -2.1427 34 1 4.8481 -8.5128 -0.0032 35 1 6.9660 -6.3081 -0.0151 36 1 6.5529 -8.8506 -1.5836 37 1 7.4678 -7.3758 -2.0282 38 1 9.3579 -8.0067 -0.6690 39 1 8.8317 -9.5938 -1.3167 40 1 9.0390 -9.2827 1.3522 41 1 7.6087 -10.1318 0.6897 42 1 7.8244 -7.3485 1.8299 43 1 6.4355 -8.4714 1.8427 44 1 4.8496 -5.7228 1.2357 45 1 4.9968 -7.2514 2.1369 46 1 2.6439 -6.3488 2.0959 47 1 2.7820 -7.9676 1.3657 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000371071899.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:07:36 Heat of formation + Delta-G solvation = -130.855083 kcal Electronic energy + Delta-G solvation = -25363.120949 eV Core-core repulsion = 21863.282356 eV Total energy + Delta-G solvation = -3499.838592 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 315.166 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -40.39831 -38.23704 -38.07722 -37.01610 -35.90889 -33.72135 -33.13338 -32.09549 -29.41393 -28.86550 -27.60653 -24.72212 -24.24797 -23.52973 -21.40059 -21.25265 -20.27844 -19.84189 -19.12255 -18.34350 -17.25110 -17.09174 -16.57784 -16.45208 -16.11779 -15.73351 -15.20667 -15.13702 -14.76209 -14.57160 -14.50075 -14.29696 -14.07534 -13.75039 -13.54161 -13.41113 -13.20590 -12.94332 -12.85402 -12.80472 -12.36234 -12.28126 -12.24676 -12.13952 -12.12685 -11.91727 -11.79165 -11.76643 -11.71599 -11.37876 -11.25164 -11.09829 -11.03044 -10.89722 -10.66141 -9.86072 -8.27290 -6.41709 -0.70638 1.39651 1.41716 1.52853 1.75079 2.36959 2.85029 3.05861 3.16957 3.64769 3.70019 3.75877 3.86673 4.03375 4.05172 4.15709 4.21774 4.29358 4.36715 4.48696 4.59532 4.68300 4.71619 4.73836 4.77350 4.88131 4.89919 4.91255 4.93626 4.95246 5.05407 5.11911 5.17455 5.20072 5.25098 5.25724 5.26324 5.36982 5.40140 5.48420 5.54973 5.57289 5.66755 5.72404 5.74900 6.04802 6.71790 7.28586 8.85062 Molecular weight = 315.17amu Principal moments of inertia in cm(-1) A = 0.015399 B = 0.003426 C = 0.003027 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1817.871493 B = 8170.298342 C = 9248.308150 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C -0.004 4.004 3 Si 0.974 3.026 4 H -0.270 1.270 5 H -0.282 1.282 6 H -0.257 1.257 7 C -0.539 4.539 8 H 0.075 0.925 9 C 0.022 3.978 10 C -0.586 4.586 11 S 2.612 3.388 12 O -0.995 6.995 13 O -0.995 6.995 14 N -0.995 5.995 15 C 0.114 3.886 16 C -0.129 4.129 17 C -0.071 4.071 18 C -0.085 4.085 19 C -0.119 4.119 20 C -0.127 4.127 21 C -0.124 4.124 22 C -0.123 4.123 23 C -0.131 4.131 24 C 0.114 3.886 25 H 0.268 0.732 26 H 0.005 0.995 27 H 0.005 0.995 28 H 0.138 0.862 29 H 0.138 0.862 30 H 0.085 0.915 31 H 0.080 0.920 32 H 0.063 0.937 33 H 0.092 0.908 34 H 0.080 0.920 35 H 0.063 0.937 36 H 0.071 0.929 37 H 0.063 0.937 38 H 0.061 0.939 39 H 0.068 0.932 40 H 0.063 0.937 41 H 0.066 0.934 42 H 0.059 0.941 43 H 0.071 0.929 44 H 0.062 0.938 45 H 0.094 0.906 46 H 0.080 0.920 47 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.471 -19.755 -0.032 27.045 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.574 5.574 2 C -0.203 4.203 3 Si 0.798 3.202 4 H -0.195 1.195 5 H -0.208 1.208 6 H -0.181 1.181 7 C -0.578 4.578 8 H 0.093 0.907 9 C -0.017 4.017 10 C -0.718 4.718 11 S 2.710 3.290 12 O -0.986 6.986 13 O -0.986 6.986 14 N -0.835 5.835 15 C -0.011 4.011 16 C -0.168 4.168 17 C -0.089 4.089 18 C -0.104 4.104 19 C -0.157 4.157 20 C -0.164 4.164 21 C -0.162 4.162 22 C -0.161 4.161 23 C -0.170 4.170 24 C -0.011 4.011 25 H 0.076 0.924 26 H 0.023 0.977 27 H 0.023 0.977 28 H 0.156 0.844 29 H 0.156 0.844 30 H 0.103 0.897 31 H 0.099 0.901 32 H 0.081 0.919 33 H 0.110 0.890 34 H 0.099 0.901 35 H 0.081 0.919 36 H 0.090 0.910 37 H 0.082 0.918 38 H 0.080 0.920 39 H 0.087 0.913 40 H 0.082 0.918 41 H 0.085 0.915 42 H 0.078 0.922 43 H 0.090 0.910 44 H 0.081 0.919 45 H 0.112 0.888 46 H 0.098 0.902 47 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges 17.364 -19.863 -0.023 26.383 hybrid contribution 0.288 1.483 0.009 1.511 sum 17.652 -18.380 -0.014 25.484 Atomic orbital electron populations 1.70110 1.08099 1.28355 1.50859 1.26133 0.95868 1.03919 0.94330 0.85304 0.78644 0.77580 0.78690 1.19518 1.20762 1.18131 1.21507 0.93931 0.90791 1.51563 0.90700 1.18810 0.93569 0.93168 0.96180 1.30388 1.12655 1.16883 1.11873 1.04737 0.75162 0.76428 0.72686 1.93483 1.72793 1.85678 1.46602 1.93482 1.72844 1.85683 1.46544 1.57601 1.58213 1.54414 1.13222 1.21726 0.94982 1.00619 0.83763 1.22106 0.93491 1.01740 0.99448 1.21159 0.94107 0.99899 0.93767 1.21783 0.93872 0.99520 0.95200 1.22454 0.96798 0.99384 0.97023 1.22518 0.97420 1.00155 0.96350 1.22356 0.99184 0.98348 0.96315 1.22266 0.99067 0.97488 0.97235 1.22079 0.93550 1.01801 0.99535 1.21626 0.94969 1.00683 0.83781 0.92357 0.97682 0.97681 0.84390 0.84420 0.89719 0.90129 0.91865 0.88952 0.90146 0.91855 0.91039 0.91837 0.91971 0.91323 0.91777 0.91535 0.92236 0.91002 0.91882 0.88817 0.90171 0.89753 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.46 13.29 21.45 0.28 -57.17 16 2 C 0.00 -0.24 5.46 84.65 0.46 0.22 16 3 Si 0.97 43.53 29.54 68.60 2.03 45.56 16 4 H -0.27 -11.60 7.11 99.48 0.71 -10.90 16 5 H -0.28 -12.40 7.11 99.48 0.71 -11.69 16 6 H -0.26 -10.76 7.11 99.48 0.71 -10.06 16 7 C -0.54 -30.26 9.11 25.60 0.23 -30.03 16 8 H 0.07 3.88 7.74 -2.91 -0.02 3.86 16 9 C 0.02 1.15 4.98 29.85 0.15 1.30 16 10 C -0.59 -22.84 6.12 71.98 0.44 -22.40 16 11 S 2.61 96.98 5.41 -56.49 -0.31 96.67 16 12 O -1.00 -42.69 16.73 -127.65 -2.14 -44.82 16 13 O -1.00 -42.67 16.71 -127.65 -2.13 -44.80 16 14 N -1.00 -26.02 3.21 -512.26 -1.65 -27.66 16 15 C 0.11 2.42 6.34 86.51 0.55 2.96 16 16 C -0.13 -2.10 5.19 30.82 0.16 -1.94 16 17 C -0.07 -1.01 1.43 -10.77 -0.02 -1.02 16 18 C -0.09 -1.12 2.50 -10.07 -0.03 -1.14 16 19 C -0.12 -1.41 5.28 31.70 0.17 -1.24 16 20 C -0.13 -1.42 6.91 31.91 0.22 -1.19 16 21 C -0.12 -1.37 6.83 31.67 0.22 -1.15 16 22 C -0.12 -1.48 5.90 31.32 0.18 -1.29 16 23 C -0.13 -2.13 5.13 30.67 0.16 -1.98 16 24 C 0.11 2.42 6.31 86.36 0.55 2.97 16 25 H 0.27 15.34 8.31 -92.71 -0.77 14.57 16 26 H 0.00 0.28 8.14 -2.39 -0.02 0.26 16 27 H 0.00 0.28 8.14 -2.39 -0.02 0.26 16 28 H 0.14 4.75 8.14 -2.39 -0.02 4.73 16 29 H 0.14 4.75 8.14 -2.39 -0.02 4.73 16 30 H 0.08 1.53 8.14 -2.39 -0.02 1.51 16 31 H 0.08 1.90 7.09 -2.39 -0.02 1.88 16 32 H 0.06 1.14 8.14 -2.39 -0.02 1.12 16 33 H 0.09 1.19 7.18 -2.39 -0.02 1.17 16 34 H 0.08 1.05 8.13 -2.39 -0.02 1.03 16 35 H 0.06 0.96 8.14 -2.38 -0.02 0.94 16 36 H 0.07 0.80 7.72 -2.39 -0.02 0.78 16 37 H 0.06 0.76 8.14 -2.39 -0.02 0.75 16 38 H 0.06 0.72 8.14 -2.38 -0.02 0.70 16 39 H 0.07 0.69 8.14 -2.39 -0.02 0.67 16 40 H 0.06 0.66 8.14 -2.39 -0.02 0.64 16 41 H 0.07 0.70 8.14 -2.39 -0.02 0.68 16 42 H 0.06 0.74 8.14 -2.39 -0.02 0.72 16 43 H 0.07 0.81 6.38 -2.39 -0.02 0.79 16 44 H 0.06 1.14 8.14 -2.38 -0.02 1.12 16 45 H 0.09 1.20 6.48 -2.39 -0.02 1.19 16 46 H 0.08 1.89 7.10 -2.39 -0.02 1.87 16 47 H 0.08 1.52 8.14 -2.39 -0.02 1.50 16 Total: -1.00 -73.79 371.96 0.45 -73.34 By element: Atomic # 1 Polarization: 13.91 SS G_CDS: 0.92 Total: 14.82 kcal Atomic # 6 Polarization: -59.38 SS G_CDS: 3.44 Total: -55.93 kcal Atomic # 7 Polarization: -83.47 SS G_CDS: -1.36 Total: -84.84 kcal Atomic # 8 Polarization: -85.36 SS G_CDS: -4.27 Total: -89.62 kcal Atomic # 14 Polarization: 43.53 SS G_CDS: 2.03 Total: 45.56 kcal Atomic # 16 Polarization: 96.98 SS G_CDS: -0.31 Total: 96.67 kcal Total: -73.79 0.45 -73.34 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000371071899.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -57.515 kcal (2) G-P(sol) polarization free energy of solvation -73.790 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -131.305 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.450 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.340 kcal (6) G-S(sol) free energy of system = (1) + (5) -130.855 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds