Wall clock time and date at job start Tue Mar 31 2020 11:59:59
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.31519 * 1
3 3 Si 1.86800 * 120.00005 * 2 1
4 4 H 1.48505 * 109.46678 * 180.02562 * 3 2 1
5 5 H 1.48495 * 109.47258 * 299.99866 * 3 2 1
6 6 H 1.48493 * 109.47346 * 60.00472 * 3 2 1
7 7 C 1.37876 * 119.99563 * 180.02562 * 2 1 3
8 8 H 1.08006 * 119.99652 * 179.97438 * 7 2 1
9 9 C 1.50697 * 120.00428 * 359.97438 * 7 2 1
10 10 C 1.53001 * 109.47291 * 179.97438 * 9 7 2
11 11 C 1.53000 * 109.46886 * 179.97438 * 10 9 7
12 12 S 1.81404 * 109.46946 * 180.02562 * 11 10 9
13 13 O 1.42107 * 110.54111 * 291.62603 * 12 11 10
14 14 O 1.42102 * 110.54223 * 68.37613 * 12 11 10
15 15 N 1.65600 * 104.45074 * 180.02562 * 12 11 10
16 16 C 1.46923 * 120.65909 * 269.72562 * 15 12 11
17 17 C 1.52720 * 109.10467 * 233.87992 * 16 15 12
18 18 C 1.53098 * 109.36983 * 305.25225 * 17 16 15
19 19 C 1.52685 * 109.58740 * 60.62153 * 18 17 16
20 20 C 1.53971 * 109.81854 * 60.69154 * 19 18 17
21 21 C 1.54959 * 104.11730 * 95.92241 * 20 19 18
22 22 C 1.54909 * 102.78466 * 37.69585 * 21 20 19
23 23 C 1.53564 * 110.04787 * 178.12137 * 19 18 17
24 24 C 1.47004 * 120.65940 * 89.99437 * 15 12 11
25 25 H 0.97000 * 119.99425 * 359.97438 * 1 2 3
26 26 H 1.09001 * 109.46613 * 59.99978 * 9 7 2
27 27 H 1.09002 * 109.47120 * 300.00329 * 9 7 2
28 28 H 1.09001 * 109.46652 * 60.00253 * 10 9 7
29 29 H 1.08992 * 109.47514 * 300.00342 * 10 9 7
30 30 H 1.09002 * 109.47398 * 300.00496 * 11 10 9
31 31 H 1.09001 * 109.47194 * 60.00677 * 11 10 9
32 32 H 1.08998 * 109.57847 * 353.73835 * 16 15 12
33 33 H 1.08997 * 109.57860 * 114.12032 * 16 15 12
34 34 H 1.08999 * 109.57641 * 185.21341 * 17 16 15
35 35 H 1.08999 * 109.38470 * 65.16714 * 17 16 15
36 36 H 1.09003 * 109.45536 * 300.58673 * 18 17 16
37 37 H 1.08997 * 109.43459 * 180.64989 * 18 17 16
38 38 H 1.09004 * 110.49911 * 214.58065 * 20 19 18
39 39 H 1.09000 * 110.50263 * 337.26415 * 20 19 18
40 40 H 1.09002 * 110.75162 * 279.36898 * 21 20 19
41 41 H 1.09006 * 110.74893 * 156.02012 * 21 20 19
42 42 H 1.09002 * 110.48429 * 203.55146 * 22 21 20
43 43 H 1.09003 * 110.59669 * 80.96515 * 22 21 20
44 44 H 1.09004 * 110.05767 * 359.97438 * 23 19 18
45 45 H 1.08997 * 110.05743 * 121.47204 * 23 19 18
46 46 H 1.08998 * 109.58680 * 246.79870 * 24 15 12
47 47 H 1.09001 * 109.58313 * 7.21842 * 24 15 12
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3152 0.0000 0.0000
3 14 2.2492 1.6177 0.0000
4 1 3.7092 1.3463 -0.0006
5 1 1.8905 2.3964 -1.2125
6 1 1.8906 2.3964 1.2125
7 6 2.0045 -1.1941 -0.0005
8 1 3.0845 -1.1941 -0.0010
9 6 1.2510 -2.4992 -0.0005
10 6 2.2452 -3.6621 -0.0018
11 6 1.4801 -4.9871 -0.0012
12 16 2.6589 -6.3660 -0.0019
13 8 3.3548 -6.4264 -1.2395
14 8 3.3565 -6.4262 1.2346
15 7 1.7085 -7.7221 -0.0019
16 6 1.2840 -8.3394 1.2620
17 6 1.6723 -9.8164 1.2521
18 6 1.0880 -10.4867 0.0059
19 6 1.6499 -9.8177 -1.2463
20 6 3.1817 -9.9702 -1.2768
21 6 3.4199 -11.2147 -2.1689
22 6 2.3317 -11.0667 -3.2614
23 6 1.1066 -10.5127 -2.5033
24 6 1.2777 -8.3356 -1.2664
25 1 -0.4849 0.8401 0.0004
26 1 0.6240 -2.5566 -0.8903
27 1 0.6246 -2.5571 0.8897
28 1 2.8725 -3.6048 0.8878
29 1 2.8712 -3.6040 -0.8921
30 1 0.8543 -5.0449 0.8894
31 1 0.8525 -5.0447 -0.8905
32 1 1.7764 -7.8395 2.0961
33 1 0.2028 -8.2499 1.3671
34 1 1.2799 -10.3031 2.1450
35 1 2.7586 -9.9047 1.2372
36 1 0.0026 -10.3865 0.0149
37 1 1.3548 -11.5435 0.0037
38 1 3.6444 -9.0885 -1.7203
39 1 3.5685 -10.1411 -0.2722
40 1 3.2729 -12.1322 -1.5991
41 1 4.4163 -11.1885 -2.6103
42 1 2.1005 -12.0360 -3.7033
43 1 2.6536 -10.3648 -4.0307
44 1 0.4414 -11.3289 -2.2212
45 1 0.5744 -9.7946 -3.1270
46 1 0.1980 -8.2315 -1.3739
47 1 1.7790 -7.8443 -2.1003
RHF calculation, no. of doubly occupied orbitals= 58
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000408440728.mol2 47
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 11:59:59
Heat of formation + Delta-G solvation = -105.314989 kcal
Electronic energy + Delta-G solvation = -25508.482534 eV
Core-core repulsion = 22009.751443 eV
Total energy + Delta-G solvation = -3498.731091 eV
No. of doubly occupied orbitals = 58
Molecular weight
(most abundant/longest-lived isotopes) = 315.166 amu
Computer time = 0.87 seconds
Orbital eigenvalues (eV)
-40.19846 -36.97176 -36.21983 -35.70002 -34.65949 -32.33044 -32.17919 -30.75121
-28.88797 -27.79631 -25.10776 -24.64648 -23.64358 -22.24512 -20.73629 -20.46433
-19.01537 -18.26762 -17.60051 -16.62899 -16.29879 -15.83953 -15.81011 -15.31793
-14.84500 -14.50545 -14.21583 -14.06518 -13.91907 -13.66955 -13.55132 -13.00864
-12.59829 -12.34546 -12.27332 -11.94573 -11.90378 -11.77319 -11.67962 -11.50748
-11.40322 -11.29491 -11.21107 -10.93910 -10.91906 -10.86303 -10.82362 -10.71529
-10.50699 -10.39578 -10.33768 -9.95726 -9.47781 -9.19496 -8.84552 -8.41421
-6.06089 -4.09065 0.45239 2.76087 3.29195 3.36678 3.41735 4.02097
4.23052 4.29346 4.37713 4.42389 4.45345 4.74348 4.83407 4.89018
5.00853 5.08694 5.15491 5.20147 5.24730 5.30492 5.31934 5.33389
5.48027 5.49408 5.56912 5.58138 5.62423 5.67479 5.72096 5.78646
5.87260 5.90605 5.92790 5.95915 6.12706 6.15791 6.25641 6.27492
6.29041 6.45233 6.55639 6.87167 7.56903 7.66634 7.92147 8.32656
8.97425 9.55718 11.05203
Molecular weight = 315.17amu
Principal moments of inertia in cm(-1)
A = 0.026910 B = 0.002886 C = 0.002833
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1040.251582 B = 9701.096015 C = 9879.721046
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.895 5.895
2 C 0.057 3.943
3 Si 0.894 3.106
4 H -0.271 1.271
5 H -0.283 1.283
6 H -0.283 1.283
7 C -0.525 4.525
8 H 0.059 0.941
9 C 0.030 3.970
10 C -0.106 4.106
11 C -0.609 4.609
12 S 2.596 3.404
13 O -0.959 6.959
14 O -0.961 6.961
15 N -1.002 6.002
16 C 0.118 3.882
17 C -0.135 4.135
18 C -0.101 4.101
19 C -0.071 4.071
20 C -0.123 4.123
21 C -0.124 4.124
22 C -0.125 4.125
23 C -0.114 4.114
24 C 0.129 3.871
25 H 0.261 0.739
26 H 0.020 0.980
27 H 0.020 0.980
28 H 0.065 0.935
29 H 0.065 0.935
30 H 0.126 0.874
31 H 0.126 0.874
32 H 0.093 0.907
33 H 0.066 0.934
34 H 0.073 0.927
35 H 0.071 0.929
36 H 0.063 0.937
37 H 0.063 0.937
38 H 0.075 0.925
39 H 0.069 0.931
40 H 0.063 0.937
41 H 0.064 0.936
42 H 0.062 0.938
43 H 0.066 0.934
44 H 0.066 0.934
45 H 0.067 0.933
46 H 0.066 0.934
47 H 0.095 0.905
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 0.104 -25.247 -1.949 25.322
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.534 5.534
2 C -0.144 4.144
3 Si 0.722 3.278
4 H -0.196 1.196
5 H -0.209 1.209
6 H -0.209 1.209
7 C -0.564 4.564
8 H 0.077 0.923
9 C -0.008 4.008
10 C -0.145 4.145
11 C -0.741 4.741
12 S 2.693 3.307
13 O -0.949 6.949
14 O -0.951 6.951
15 N -0.839 5.839
16 C -0.008 4.008
17 C -0.174 4.174
18 C -0.139 4.139
19 C -0.073 4.073
20 C -0.160 4.160
21 C -0.162 4.162
22 C -0.162 4.162
23 C -0.152 4.152
24 C 0.003 3.997
25 H 0.070 0.930
26 H 0.039 0.961
27 H 0.039 0.961
28 H 0.083 0.917
29 H 0.084 0.916
30 H 0.145 0.855
31 H 0.145 0.855
32 H 0.111 0.889
33 H 0.085 0.915
34 H 0.091 0.909
35 H 0.090 0.910
36 H 0.082 0.918
37 H 0.082 0.918
38 H 0.094 0.906
39 H 0.087 0.913
40 H 0.082 0.918
41 H 0.082 0.918
42 H 0.080 0.920
43 H 0.085 0.915
44 H 0.085 0.915
45 H 0.086 0.914
46 H 0.085 0.915
47 H 0.113 0.887
Dipole moment (debyes) X Y Z Total
from point charges 0.902 -25.139 -1.939 25.230
hybrid contribution -0.423 1.179 0.024 1.252
sum 0.479 -23.961 -1.915 24.042
Atomic orbital electron populations
1.69972 1.06093 1.26661 1.50721 1.25026 0.94893 0.99389 0.95110
0.86498 0.80209 0.83497 0.77624 1.19580 1.20933 1.20928 1.21297
0.93295 0.90886 1.50892 0.92318 1.19065 0.93530 0.90470 0.97717
1.21499 0.99380 0.91772 1.01875 1.30607 1.16428 1.15950 1.11112
1.05468 0.75933 0.75047 0.74208 1.93549 1.70341 1.85838 1.45189
1.93549 1.70299 1.85889 1.45356 1.57828 1.71055 1.43453 1.11529
1.21313 0.99982 0.94125 0.85343 1.21874 1.02003 0.95341 0.98161
1.21504 0.99930 0.98994 0.93478 1.21227 0.96138 0.94668 0.95267
1.22595 0.94557 0.98604 1.00281 1.22498 0.98657 0.98075 0.96929
1.22370 0.95358 1.00632 0.97851 1.22177 0.97758 0.99699 0.95587
1.21574 0.99741 0.92959 0.85394 0.92954 0.96132 0.96131 0.91667
0.91632 0.85541 0.85536 0.88854 0.91538 0.90891 0.91015 0.91818
0.91810 0.90596 0.91269 0.91838 0.91755 0.91968 0.91481 0.91528
0.91417 0.91531 0.88696
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 16.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.90 -26.70 13.29 55.43 0.74 -25.96 16
2 C 0.06 1.64 5.46 -17.82 -0.10 1.54 16
3 Si 0.89 21.67 29.54 -169.99 -5.02 16.65 16
4 H -0.27 -6.45 7.11 56.52 0.40 -6.05 16
5 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16
6 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16
7 C -0.53 -14.92 9.11 -34.44 -0.31 -15.23 16
8 H 0.06 1.62 7.74 -52.48 -0.41 1.21 16
9 C 0.03 0.78 4.97 -27.88 -0.14 0.64 16
10 C -0.11 -2.19 5.16 -26.73 -0.14 -2.33 16
11 C -0.61 -9.66 6.18 37.16 0.23 -9.43 16
12 S 2.60 39.38 5.46 -107.50 -0.59 38.79 16
13 O -0.96 -16.74 16.59 -57.54 -0.95 -17.69 16
14 O -0.96 -17.01 16.59 -57.54 -0.95 -17.97 16
15 N -1.00 -11.61 3.01 -113.94 -0.34 -11.95 16
16 C 0.12 1.16 6.39 -3.96 -0.03 1.13 16
17 C -0.13 -1.14 5.84 -26.82 -0.16 -1.30 16
18 C -0.10 -0.79 4.45 -26.84 -0.12 -0.91 16
19 C -0.07 -0.64 0.63 -153.96 -0.10 -0.73 16
20 C -0.12 -1.25 5.49 -25.19 -0.14 -1.39 16
21 C -0.12 -1.04 6.91 -24.69 -0.17 -1.21 16
22 C -0.12 -0.96 6.84 -25.02 -0.17 -1.13 16
23 C -0.11 -0.87 6.11 -25.73 -0.16 -1.02 16
24 C 0.13 1.31 4.78 -3.86 -0.02 1.29 16
25 H 0.26 7.30 8.31 -40.82 -0.34 6.96 16
26 H 0.02 0.54 8.14 -51.93 -0.42 0.12 16
27 H 0.02 0.54 8.14 -51.93 -0.42 0.12 16
28 H 0.06 1.32 8.14 -51.93 -0.42 0.90 16
29 H 0.06 1.33 8.14 -51.93 -0.42 0.90 16
30 H 0.13 1.80 8.14 -51.92 -0.42 1.38 16
31 H 0.13 1.80 8.14 -51.92 -0.42 1.38 16
32 H 0.09 0.98 6.86 -51.93 -0.36 0.63 16
33 H 0.07 0.54 8.14 -51.93 -0.42 0.11 16
34 H 0.07 0.50 8.14 -51.93 -0.42 0.07 16
35 H 0.07 0.68 6.10 -51.93 -0.32 0.37 16
36 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16
37 H 0.06 0.46 8.14 -51.93 -0.42 0.03 16
38 H 0.08 0.94 7.74 -51.93 -0.40 0.54 16
39 H 0.07 0.72 5.76 -51.93 -0.30 0.42 16
40 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16
41 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16
42 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16
43 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16
44 H 0.07 0.45 7.67 -51.93 -0.40 0.05 16
45 H 0.07 0.49 7.67 -51.93 -0.40 0.10 16
46 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16
47 H 0.09 1.06 6.71 -51.93 -0.35 0.71 16
LS Contribution 370.78 15.07 5.59 5.59
Total: -1.00 -33.51 370.78 -11.45 -44.96
By element:
Atomic # 1 Polarization: 6.06 SS G_CDS: -8.40 Total: -2.34 kcal
Atomic # 6 Polarization: -28.56 SS G_CDS: -1.51 Total: -30.08 kcal
Atomic # 7 Polarization: -38.30 SS G_CDS: 0.39 Total: -37.91 kcal
Atomic # 8 Polarization: -33.75 SS G_CDS: -1.91 Total: -35.66 kcal
Atomic # 14 Polarization: 21.67 SS G_CDS: -5.02 Total: 16.65 kcal
Atomic # 16 Polarization: 39.38 SS G_CDS: -0.59 Total: 38.79 kcal
Total LS contribution 5.59 Total: 5.59 kcal
Total: -33.51 -11.45 -44.96 kcal
The number of atoms in the molecule is 47
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000408440728.mol2 47
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -60.352 kcal
(2) G-P(sol) polarization free energy of solvation -33.515 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.867 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.448 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.963 kcal
(6) G-S(sol) free energy of system = (1) + (5) -105.315 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.87 seconds