Wall clock time and date at job start Tue Mar 31 2020 11:22:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30996 * 1 3 3 C 1.50701 * 120.00080 * 2 1 4 4 N 1.46499 * 109.46992 * 234.99580 * 3 2 1 5 5 C 1.46502 * 119.99658 * 90.00121 * 4 3 2 6 6 C 1.50701 * 109.47310 * 89.99973 * 5 4 3 7 7 H 1.07997 * 119.99940 * 359.97438 * 6 5 4 8 8 C 1.37877 * 120.00037 * 179.97438 * 6 5 4 9 9 N 1.31516 * 119.99860 * 359.97438 * 8 6 5 10 10 Si 1.86799 * 119.99877 * 179.97438 * 8 6 5 11 11 H 1.48497 * 109.47306 * 0.02562 * 10 8 6 12 12 H 1.48508 * 109.46804 * 120.00246 * 10 8 6 13 13 H 1.48498 * 109.47100 * 239.99886 * 10 8 6 14 14 C 1.34775 * 120.00337 * 269.99986 * 4 3 2 15 15 O 1.21282 * 120.00258 * 180.02562 * 14 4 3 16 16 C 1.50701 * 119.99714 * 359.97438 * 14 4 3 17 17 H 1.09003 * 115.54852 * 34.33703 * 16 14 4 18 18 C 1.52994 * 117.49908 * 248.62145 * 16 14 4 19 19 C 1.53000 * 60.00333 * 252.51131 * 18 16 14 20 20 H 1.09003 * 117.49467 * 107.48646 * 19 18 16 21 21 C 1.50697 * 117.50300 * 252.51149 * 19 18 16 22 22 C 1.38166 * 120.02639 * 8.62307 * 21 19 18 23 23 C 1.38240 * 120.05475 * 179.97438 * 22 21 19 24 24 C 1.38291 * 120.11200 * 0.02562 * 23 22 21 25 25 C 1.38128 * 120.05694 * 0.02660 * 24 23 22 26 26 C 1.38716 * 120.02740 * 188.34395 * 21 19 18 27 27 O 1.35896 * 120.05392 * 0.02562 * 26 21 19 28 28 C 1.42902 * 116.99756 * 179.97438 * 27 26 21 29 29 H 1.07999 * 119.99751 * 179.97438 * 1 2 3 30 30 H 1.07996 * 119.99789 * 0.02562 * 1 2 3 31 31 H 1.08005 * 120.00347 * 179.97438 * 2 1 3 32 32 H 1.09002 * 109.47060 * 354.99792 * 3 2 1 33 33 H 1.09001 * 109.47380 * 114.99880 * 3 2 1 34 34 H 1.08998 * 109.46888 * 209.99779 * 5 4 3 35 35 H 1.08994 * 109.47490 * 329.99842 * 5 4 3 36 36 H 0.97000 * 119.99433 * 179.97438 * 9 8 6 37 37 H 1.08996 * 117.50504 * 0.02562 * 18 16 14 38 38 H 1.09000 * 117.49669 * 145.02437 * 18 16 14 39 39 H 1.07992 * 119.97349 * 359.97438 * 22 21 19 40 40 H 1.08002 * 119.94895 * 179.97438 * 23 22 21 41 41 H 1.08005 * 119.97274 * 179.97438 * 24 23 22 42 42 H 1.07993 * 120.02730 * 179.97438 * 25 24 23 43 43 H 1.09003 * 109.46867 * 60.00029 * 28 27 26 44 44 H 1.09000 * 109.46787 * 179.97438 * 28 27 26 45 45 H 1.09000 * 109.47297 * 300.00012 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 7 2.9938 1.3318 -1.1314 5 6 2.5589 1.8648 -2.4248 6 6 2.8443 3.3435 -2.4804 7 1 3.3033 3.8370 -1.6366 8 6 2.5194 4.0664 -3.6087 9 7 1.9609 3.4653 -4.6365 10 14 2.8726 5.8994 -3.6773 11 1 3.5005 6.3307 -2.4026 12 1 3.7965 6.1836 -4.8047 13 1 1.6021 6.6410 -3.8796 14 6 4.2497 0.8661 -0.9823 15 8 5.0200 0.8886 -1.9188 16 6 4.6972 0.3183 0.3484 17 1 3.9325 -0.2049 0.9226 18 6 5.7410 1.1207 1.1277 19 6 6.1346 -0.1952 0.4537 20 1 6.7566 -0.1368 -0.4396 21 6 6.3850 -1.3853 1.3437 22 6 6.0860 -1.3162 2.6908 23 6 6.3149 -2.4077 3.5077 24 6 6.8440 -3.5709 2.9792 25 6 7.1455 -3.6447 1.6332 26 6 6.9103 -2.5529 0.8100 27 8 7.2003 -2.6250 -0.5157 28 6 7.7392 -3.8584 -0.9957 29 1 -0.5400 -0.9353 -0.0004 30 1 -0.5399 0.9353 -0.0004 31 1 1.8500 -0.9353 0.0004 32 1 1.3586 2.1316 -0.0896 33 1 2.6213 1.4026 0.9314 34 1 3.0990 1.3602 -3.2259 35 1 1.4889 1.6966 -2.5460 36 1 1.7320 3.9740 -5.4301 37 1 6.1039 2.0450 0.6782 38 1 5.6632 1.1257 2.2149 39 1 5.6732 -0.4087 3.1060 40 1 6.0810 -2.3516 4.5606 41 1 7.0223 -4.4222 3.6195 42 1 7.5590 -4.5533 1.2211 43 1 7.0286 -4.6632 -0.8071 44 1 7.9244 -3.7814 -2.0671 45 1 8.6750 -4.0716 -0.4792 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000412352974.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:22:25 Heat of formation + Delta-G solvation = 3.168262 kcal Electronic energy + Delta-G solvation = -25991.248725 eV Core-core repulsion = 22361.777870 eV Total energy + Delta-G solvation = -3629.470855 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 315.162 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -40.50952 -39.26606 -37.65090 -36.24098 -35.39159 -33.12749 -31.98887 -30.85402 -30.23748 -27.83165 -27.33597 -25.50031 -24.37275 -23.76556 -22.19515 -21.74513 -20.38882 -19.79838 -18.29817 -18.20144 -16.81220 -16.43352 -16.06877 -15.87505 -15.74464 -15.36449 -14.61839 -14.54282 -14.43818 -14.32692 -13.78387 -13.73309 -13.15854 -12.93103 -12.78265 -12.37496 -12.14085 -12.05832 -11.80817 -11.60640 -11.40579 -11.23458 -11.23184 -11.03237 -10.91961 -10.82744 -10.65060 -10.49132 -10.19870 -10.14650 -9.57324 -9.14118 -8.97047 -8.77091 -8.39990 -8.13778 -7.61590 -6.00433 -4.04906 1.14934 1.32008 2.49772 3.21918 3.22768 3.32036 3.39578 3.43664 3.59485 4.01920 4.26459 4.47472 4.58268 4.67582 4.87085 4.92791 5.01199 5.03356 5.08425 5.12299 5.23112 5.30065 5.33583 5.37647 5.40294 5.46706 5.48956 5.54090 5.73527 5.84364 5.89749 6.06211 6.12819 6.15974 6.25138 6.26207 6.36339 6.58296 6.65639 6.84622 6.96827 7.15277 7.32373 7.50697 7.62030 7.96685 8.28156 8.48715 8.95298 9.17422 9.60107 11.07693 Molecular weight = 315.16amu Principal moments of inertia in cm(-1) A = 0.015624 B = 0.003368 C = 0.003160 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1791.690794 B = 8311.628339 C = 8857.336710 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.167 4.167 3 C 0.138 3.862 4 N -0.590 5.590 5 C 0.247 3.753 6 C -0.524 4.524 7 H 0.058 0.942 8 C 0.060 3.940 9 N -0.895 5.895 10 Si 0.897 3.103 11 H -0.273 1.273 12 H -0.283 1.283 13 H -0.284 1.284 14 C 0.535 3.465 15 O -0.537 6.537 16 C -0.171 4.171 17 H 0.118 0.882 18 C -0.149 4.149 19 C -0.079 4.079 20 H 0.129 0.871 21 C -0.077 4.077 22 C -0.083 4.083 23 C -0.156 4.156 24 C -0.088 4.088 25 C -0.209 4.209 26 C 0.137 3.863 27 O -0.305 6.305 28 C 0.027 3.973 29 H 0.093 0.907 30 H 0.099 0.901 31 H 0.103 0.897 32 H 0.086 0.914 33 H 0.076 0.924 34 H 0.043 0.957 35 H 0.032 0.968 36 H 0.262 0.738 37 H 0.105 0.895 38 H 0.102 0.898 39 H 0.131 0.869 40 H 0.122 0.878 41 H 0.122 0.878 42 H 0.127 0.873 43 H 0.053 0.947 44 H 0.101 0.899 45 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.645 -14.480 16.841 23.183 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C -0.186 4.186 3 C 0.014 3.986 4 N -0.321 5.321 5 C 0.128 3.872 6 C -0.563 4.563 7 H 0.076 0.924 8 C -0.142 4.142 9 N -0.534 5.534 10 Si 0.725 3.275 11 H -0.198 1.198 12 H -0.209 1.209 13 H -0.210 1.210 14 C 0.321 3.679 15 O -0.414 6.414 16 C -0.192 4.192 17 H 0.136 0.864 18 C -0.186 4.186 19 C -0.098 4.098 20 H 0.147 0.853 21 C -0.078 4.078 22 C -0.101 4.101 23 C -0.175 4.175 24 C -0.106 4.106 25 C -0.228 4.228 26 C 0.091 3.909 27 O -0.218 6.218 28 C -0.068 4.068 29 H 0.111 0.889 30 H 0.117 0.883 31 H 0.121 0.879 32 H 0.104 0.896 33 H 0.094 0.906 34 H 0.061 0.939 35 H 0.050 0.950 36 H 0.072 0.928 37 H 0.123 0.877 38 H 0.120 0.880 39 H 0.149 0.851 40 H 0.140 0.860 41 H 0.140 0.860 42 H 0.145 0.855 43 H 0.072 0.928 44 H 0.119 0.881 45 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 6.952 -14.264 15.957 22.504 hybrid contribution 0.038 0.573 -0.069 0.579 sum 6.990 -13.690 15.888 22.107 Atomic orbital electron populations 1.23799 0.95836 1.01679 1.00908 1.23468 0.96399 0.99155 0.99597 1.20564 0.92994 0.95103 0.89959 1.48112 1.10338 1.60114 1.13490 1.19273 0.95353 0.93748 0.78810 1.21485 1.40273 0.93338 1.01196 0.92378 1.24939 0.95134 0.98728 0.95360 1.69953 1.42264 1.36011 1.05154 0.86454 0.77874 0.85041 0.78121 1.19788 1.20909 1.21005 1.19374 0.82324 0.78148 0.88037 1.90665 1.52788 1.56430 1.41547 1.22487 0.93214 1.05225 0.98303 0.86404 1.23093 1.00959 0.95728 0.98829 1.20837 0.97054 0.91424 1.00470 0.85330 1.18572 1.02751 0.92872 0.93561 1.20936 0.98324 0.98864 0.92007 1.20999 1.02970 0.93601 0.99902 1.20896 0.97555 0.97837 0.94323 1.21204 1.07998 0.98639 0.94973 1.18845 0.95231 0.93656 0.83145 1.86207 1.78059 1.36635 1.20851 1.23068 0.97710 0.85253 1.00769 0.88875 0.88301 0.87858 0.89567 0.90613 0.93935 0.95004 0.92832 0.87681 0.87978 0.85117 0.85952 0.86031 0.85541 0.92789 0.88091 0.92852 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.50 14.32 29.02 0.42 -2.08 16 2 C -0.17 -2.50 9.54 -36.02 -0.34 -2.85 16 3 C 0.14 2.33 5.49 -5.19 -0.03 2.31 16 4 N -0.59 -12.94 2.44 -176.43 -0.43 -13.37 16 5 C 0.25 6.65 5.16 -5.19 -0.03 6.62 16 6 C -0.52 -15.10 9.39 -34.44 -0.32 -15.42 16 7 H 0.06 1.67 7.81 -52.49 -0.41 1.26 16 8 C 0.06 1.75 5.46 -17.82 -0.10 1.65 16 9 N -0.89 -27.00 13.29 55.43 0.74 -26.27 16 10 Si 0.90 22.13 29.54 -169.99 -5.02 17.11 16 11 H -0.27 -6.63 7.11 56.52 0.40 -6.22 16 12 H -0.28 -6.99 7.11 56.52 0.40 -6.59 16 13 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 14 C 0.53 11.68 7.46 -10.99 -0.08 11.60 16 15 O -0.54 -14.13 15.84 5.56 0.09 -14.04 16 16 C -0.17 -2.78 4.43 -91.77 -0.41 -3.18 16 17 H 0.12 1.67 6.97 -51.93 -0.36 1.31 16 18 C -0.15 -2.06 9.56 -26.73 -0.26 -2.32 16 19 C -0.08 -1.23 5.25 -91.77 -0.48 -1.71 16 20 H 0.13 2.33 7.30 -51.93 -0.38 1.96 16 21 C -0.08 -1.03 5.62 -104.47 -0.59 -1.62 16 22 C -0.08 -0.91 9.30 -39.61 -0.37 -1.28 16 23 C -0.16 -1.49 10.04 -39.56 -0.40 -1.88 16 24 C -0.09 -0.82 10.04 -39.60 -0.40 -1.22 16 25 C -0.21 -2.21 9.04 -39.43 -0.36 -2.56 16 26 C 0.14 1.81 6.66 -39.22 -0.26 1.55 16 27 O -0.30 -4.26 9.68 -19.41 -0.19 -4.45 16 28 C 0.03 0.25 9.81 101.05 0.99 1.24 16 29 H 0.09 1.09 8.06 -52.49 -0.42 0.67 16 30 H 0.10 1.31 7.84 -52.49 -0.41 0.90 16 31 H 0.10 1.51 8.03 -52.48 -0.42 1.08 16 32 H 0.09 1.50 7.72 -51.93 -0.40 1.10 16 33 H 0.08 1.09 6.64 -51.93 -0.34 0.74 16 34 H 0.04 1.30 7.42 -51.93 -0.39 0.91 16 35 H 0.03 0.87 8.07 -51.93 -0.42 0.45 16 36 H 0.26 7.44 8.31 -40.82 -0.34 7.10 16 37 H 0.10 1.58 8.14 -51.93 -0.42 1.16 16 38 H 0.10 1.08 6.18 -51.93 -0.32 0.75 16 39 H 0.13 1.20 6.02 -52.49 -0.32 0.88 16 40 H 0.12 0.87 8.06 -52.49 -0.42 0.45 16 41 H 0.12 0.82 8.06 -52.48 -0.42 0.40 16 42 H 0.13 1.05 6.30 -52.49 -0.33 0.72 16 43 H 0.05 0.43 7.68 -51.93 -0.40 0.03 16 44 H 0.10 0.82 8.14 -51.93 -0.42 0.39 16 45 H 0.05 0.40 7.65 -51.93 -0.40 0.00 16 LS Contribution 379.07 15.07 5.71 5.71 Total: -1.00 -34.78 379.07 -8.66 -43.43 By element: Atomic # 1 Polarization: 9.59 SS G_CDS: -6.55 Total: 3.04 kcal Atomic # 6 Polarization: -8.16 SS G_CDS: -3.01 Total: -11.16 kcal Atomic # 7 Polarization: -39.95 SS G_CDS: 0.31 Total: -39.64 kcal Atomic # 8 Polarization: -18.39 SS G_CDS: -0.10 Total: -18.49 kcal Atomic # 14 Polarization: 22.13 SS G_CDS: -5.02 Total: 17.11 kcal Total LS contribution 5.71 Total: 5.71 kcal Total: -34.78 -8.66 -43.43 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000412352974.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.601 kcal (2) G-P(sol) polarization free energy of solvation -34.777 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.824 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.656 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.433 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.168 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds