Wall clock time and date at job start Tue Mar 31 2020 11:22:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30996 * 1 3 3 C 1.50701 * 120.00080 * 2 1 4 4 N 1.46499 * 109.46992 * 234.99580 * 3 2 1 5 5 C 1.46502 * 119.99658 * 90.00121 * 4 3 2 6 6 C 1.50701 * 109.47310 * 89.99973 * 5 4 3 7 7 H 1.07997 * 119.99940 * 359.97438 * 6 5 4 8 8 C 1.37877 * 120.00037 * 179.97438 * 6 5 4 9 9 N 1.31516 * 119.99860 * 359.97438 * 8 6 5 10 10 Si 1.86799 * 119.99877 * 179.97438 * 8 6 5 11 11 H 1.48497 * 109.47306 * 0.02562 * 10 8 6 12 12 H 1.48508 * 109.46804 * 120.00246 * 10 8 6 13 13 H 1.48498 * 109.47100 * 239.99886 * 10 8 6 14 14 C 1.34775 * 120.00337 * 269.99986 * 4 3 2 15 15 O 1.21282 * 120.00258 * 180.02562 * 14 4 3 16 16 C 1.50701 * 119.99714 * 359.97438 * 14 4 3 17 17 H 1.09003 * 115.54852 * 34.33703 * 16 14 4 18 18 C 1.52994 * 117.49908 * 248.62145 * 16 14 4 19 19 C 1.53000 * 60.00333 * 252.51131 * 18 16 14 20 20 H 1.09003 * 117.49467 * 107.48646 * 19 18 16 21 21 C 1.50697 * 117.50300 * 252.51149 * 19 18 16 22 22 C 1.38166 * 120.02639 * 8.62307 * 21 19 18 23 23 C 1.38240 * 120.05475 * 179.97438 * 22 21 19 24 24 C 1.38291 * 120.11200 * 0.02562 * 23 22 21 25 25 C 1.38128 * 120.05694 * 0.02660 * 24 23 22 26 26 C 1.38716 * 120.02740 * 188.34395 * 21 19 18 27 27 O 1.35896 * 120.05392 * 0.02562 * 26 21 19 28 28 C 1.42902 * 116.99756 * 179.97438 * 27 26 21 29 29 H 1.07999 * 119.99751 * 179.97438 * 1 2 3 30 30 H 1.07996 * 119.99789 * 0.02562 * 1 2 3 31 31 H 1.08005 * 120.00347 * 179.97438 * 2 1 3 32 32 H 1.09002 * 109.47060 * 354.99792 * 3 2 1 33 33 H 1.09001 * 109.47380 * 114.99880 * 3 2 1 34 34 H 1.08998 * 109.46888 * 209.99779 * 5 4 3 35 35 H 1.08994 * 109.47490 * 329.99842 * 5 4 3 36 36 H 0.97000 * 119.99433 * 179.97438 * 9 8 6 37 37 H 1.08996 * 117.50504 * 0.02562 * 18 16 14 38 38 H 1.09000 * 117.49669 * 145.02437 * 18 16 14 39 39 H 1.07992 * 119.97349 * 359.97438 * 22 21 19 40 40 H 1.08002 * 119.94895 * 179.97438 * 23 22 21 41 41 H 1.08005 * 119.97274 * 179.97438 * 24 23 22 42 42 H 1.07993 * 120.02730 * 179.97438 * 25 24 23 43 43 H 1.09003 * 109.46867 * 60.00029 * 28 27 26 44 44 H 1.09000 * 109.46787 * 179.97438 * 28 27 26 45 45 H 1.09000 * 109.47297 * 300.00012 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 7 2.9938 1.3318 -1.1314 5 6 2.5589 1.8648 -2.4248 6 6 2.8443 3.3435 -2.4804 7 1 3.3033 3.8370 -1.6366 8 6 2.5194 4.0664 -3.6087 9 7 1.9609 3.4653 -4.6365 10 14 2.8726 5.8994 -3.6773 11 1 3.5005 6.3307 -2.4026 12 1 3.7965 6.1836 -4.8047 13 1 1.6021 6.6410 -3.8796 14 6 4.2497 0.8661 -0.9823 15 8 5.0200 0.8886 -1.9188 16 6 4.6972 0.3183 0.3484 17 1 3.9325 -0.2049 0.9226 18 6 5.7410 1.1207 1.1277 19 6 6.1346 -0.1952 0.4537 20 1 6.7566 -0.1368 -0.4396 21 6 6.3850 -1.3853 1.3437 22 6 6.0860 -1.3162 2.6908 23 6 6.3149 -2.4077 3.5077 24 6 6.8440 -3.5709 2.9792 25 6 7.1455 -3.6447 1.6332 26 6 6.9103 -2.5529 0.8100 27 8 7.2003 -2.6250 -0.5157 28 6 7.7392 -3.8584 -0.9957 29 1 -0.5400 -0.9353 -0.0004 30 1 -0.5399 0.9353 -0.0004 31 1 1.8500 -0.9353 0.0004 32 1 1.3586 2.1316 -0.0896 33 1 2.6213 1.4026 0.9314 34 1 3.0990 1.3602 -3.2259 35 1 1.4889 1.6966 -2.5460 36 1 1.7320 3.9740 -5.4301 37 1 6.1039 2.0450 0.6782 38 1 5.6632 1.1257 2.2149 39 1 5.6732 -0.4087 3.1060 40 1 6.0810 -2.3516 4.5606 41 1 7.0223 -4.4222 3.6195 42 1 7.5590 -4.5533 1.2211 43 1 7.0286 -4.6632 -0.8071 44 1 7.9244 -3.7814 -2.0671 45 1 8.6750 -4.0716 -0.4792 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000412352974.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:22:24 Heat of formation + Delta-G solvation = -17.318905 kcal Electronic energy + Delta-G solvation = -25992.137115 eV Core-core repulsion = 22361.777870 eV Total energy + Delta-G solvation = -3630.359246 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 315.162 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -41.52378 -40.71486 -38.65958 -37.50149 -36.92255 -35.10018 -33.67071 -31.75945 -31.01361 -29.80634 -28.12014 -26.95577 -26.11071 -24.80679 -23.62545 -22.85481 -21.43642 -21.01924 -19.82323 -19.12626 -18.63876 -18.12229 -17.38104 -17.01344 -16.64293 -16.59772 -16.21630 -16.07630 -15.69797 -15.32261 -14.97198 -14.89231 -14.44661 -14.29904 -14.18317 -13.71806 -13.49873 -13.31713 -13.07052 -12.93398 -12.84436 -12.82721 -12.62380 -12.29209 -12.25120 -12.19971 -12.00312 -11.86422 -11.68813 -11.61383 -11.36230 -10.66502 -10.64081 -10.32707 -9.69672 -9.47949 -9.01221 -8.23379 -6.38509 0.34262 0.52611 1.31072 1.35336 1.38068 1.50063 1.67893 2.30927 2.44407 2.44991 2.72352 3.05999 3.09841 3.49920 3.71923 3.87365 3.90997 4.02594 4.12101 4.18658 4.22896 4.27134 4.30420 4.35604 4.45652 4.47826 4.57877 4.68668 4.69691 4.76218 4.84369 4.92703 5.03448 5.05567 5.12143 5.15886 5.21113 5.44593 5.51866 5.57268 5.64699 5.70415 5.75414 5.93077 5.95441 6.05065 6.51426 6.68394 6.76506 7.26725 7.46580 8.84311 Molecular weight = 315.16amu Principal moments of inertia in cm(-1) A = 0.015624 B = 0.003368 C = 0.003160 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1791.690794 B = 8311.628339 C = 8857.336710 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C -0.185 4.185 3 C 0.135 3.865 4 N -0.594 5.594 5 C 0.264 3.736 6 C -0.542 4.542 7 H 0.055 0.945 8 C 0.006 3.994 9 N -0.929 5.929 10 Si 0.970 3.030 11 H -0.265 1.265 12 H -0.282 1.282 13 H -0.267 1.267 14 C 0.524 3.476 15 O -0.598 6.598 16 C -0.174 4.174 17 H 0.147 0.853 18 C -0.125 4.125 19 C -0.078 4.078 20 H 0.086 0.914 21 C -0.103 4.103 22 C -0.083 4.083 23 C -0.153 4.153 24 C -0.084 4.084 25 C -0.212 4.212 26 C 0.109 3.891 27 O -0.344 6.344 28 C 0.020 3.980 29 H 0.116 0.884 30 H 0.101 0.899 31 H 0.108 0.892 32 H 0.078 0.922 33 H 0.108 0.892 34 H -0.008 1.008 35 H 0.021 0.979 36 H 0.267 0.733 37 H 0.087 0.913 38 H 0.149 0.851 39 H 0.151 0.849 40 H 0.154 0.846 41 H 0.153 0.847 42 H 0.145 0.855 43 H 0.066 0.934 44 H 0.103 0.897 45 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.302 -14.942 20.698 26.295 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.204 4.204 3 C 0.013 3.987 4 N -0.323 5.323 5 C 0.143 3.857 6 C -0.580 4.580 7 H 0.073 0.927 8 C -0.193 4.193 9 N -0.569 5.569 10 Si 0.794 3.206 11 H -0.189 1.189 12 H -0.208 1.208 13 H -0.192 1.192 14 C 0.313 3.687 15 O -0.480 6.480 16 C -0.195 4.195 17 H 0.164 0.836 18 C -0.162 4.162 19 C -0.097 4.097 20 H 0.105 0.895 21 C -0.103 4.103 22 C -0.100 4.100 23 C -0.171 4.171 24 C -0.102 4.102 25 C -0.231 4.231 26 C 0.064 3.936 27 O -0.258 6.258 28 C -0.074 4.074 29 H 0.134 0.866 30 H 0.119 0.881 31 H 0.126 0.874 32 H 0.097 0.903 33 H 0.126 0.874 34 H 0.010 0.990 35 H 0.039 0.961 36 H 0.076 0.924 37 H 0.106 0.894 38 H 0.166 0.834 39 H 0.169 0.831 40 H 0.172 0.828 41 H 0.171 0.829 42 H 0.163 0.837 43 H 0.085 0.915 44 H 0.121 0.879 45 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 6.581 -14.743 19.866 25.599 hybrid contribution 0.135 0.613 -1.280 1.426 sum 6.715 -14.131 18.586 24.294 Atomic orbital electron populations 1.24043 0.95382 1.02933 0.98139 1.23324 0.96880 0.98193 1.02051 1.20824 0.92526 0.96176 0.89179 1.48120 1.11531 1.59568 1.13126 1.18697 0.93739 0.92887 0.80357 1.21728 1.40564 0.94231 1.01489 0.92703 1.25901 0.94607 1.03987 0.94768 1.70075 1.42904 1.38123 1.05792 0.85331 0.78270 0.78752 0.78233 1.18928 1.20826 1.19213 1.20378 0.81529 0.77122 0.89634 1.90624 1.54396 1.58868 1.44122 1.22348 0.94562 1.06905 0.95657 0.83577 1.23248 0.97923 0.94158 1.00873 1.20633 0.95351 0.93735 0.99983 0.89529 1.18595 1.05122 0.92163 0.94466 1.21175 0.97793 1.00283 0.90779 1.21401 1.01662 0.92859 1.01215 1.21346 0.95975 0.98902 0.93985 1.21472 1.07693 0.98445 0.95482 1.19201 0.96444 0.94779 0.83178 1.86155 1.78787 1.38885 1.21970 1.23281 0.98742 0.84258 1.01138 0.86562 0.88079 0.87373 0.90322 0.87438 0.99013 0.96060 0.92404 0.89441 0.83372 0.83125 0.82843 0.82917 0.83732 0.91544 0.87866 0.91021 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.21 14.32 67.78 0.97 -3.24 16 2 C -0.19 -5.35 9.54 25.65 0.24 -5.11 16 3 C 0.13 4.51 5.49 85.63 0.47 4.98 16 4 N -0.59 -27.13 2.44 -830.50 -2.03 -29.16 16 5 C 0.26 15.09 5.16 85.63 0.44 15.53 16 6 C -0.54 -32.38 9.39 25.60 0.24 -32.13 16 7 H 0.05 3.23 7.81 -2.91 -0.02 3.21 16 8 C 0.01 0.36 5.46 84.65 0.46 0.83 16 9 N -0.93 -57.84 13.29 21.45 0.28 -57.55 16 10 Si 0.97 46.00 29.54 68.60 2.03 48.02 16 11 H -0.27 -12.12 7.11 99.48 0.71 -11.41 16 12 H -0.28 -13.30 7.11 99.48 0.71 -12.59 16 13 H -0.27 -11.90 7.11 99.48 0.71 -11.19 16 14 C 0.52 24.10 7.46 87.66 0.65 24.76 16 15 O -0.60 -34.17 15.84 -3.04 -0.05 -34.21 16 16 C -0.17 -5.65 4.43 -11.54 -0.05 -5.70 16 17 H 0.15 3.87 6.97 -2.39 -0.02 3.86 16 18 C -0.13 -3.34 9.56 30.59 0.29 -3.04 16 19 C -0.08 -2.49 5.25 -11.54 -0.06 -2.55 16 20 H 0.09 3.47 7.30 -2.39 -0.02 3.46 16 21 C -0.10 -2.68 5.62 -19.77 -0.11 -2.79 16 22 C -0.08 -1.54 9.30 22.25 0.21 -1.34 16 23 C -0.15 -2.26 10.04 22.28 0.22 -2.04 16 24 C -0.08 -1.26 10.04 22.26 0.22 -1.03 16 25 C -0.21 -4.05 9.04 22.37 0.20 -3.85 16 26 C 0.11 2.87 6.66 22.51 0.15 3.02 16 27 O -0.34 -10.17 9.68 -92.38 -0.89 -11.06 16 28 C 0.02 0.38 9.81 113.37 1.11 1.49 16 29 H 0.12 2.41 8.06 -2.91 -0.02 2.38 16 30 H 0.10 2.50 7.84 -2.91 -0.02 2.48 16 31 H 0.11 3.03 8.03 -2.91 -0.02 3.00 16 32 H 0.08 2.73 7.72 -2.39 -0.02 2.71 16 33 H 0.11 2.87 6.64 -2.39 -0.02 2.85 16 34 H -0.01 -0.55 7.42 -2.39 -0.02 -0.57 16 35 H 0.02 1.24 8.07 -2.39 -0.02 1.22 16 36 H 0.27 15.49 8.31 -92.71 -0.77 14.71 16 37 H 0.09 2.66 8.14 -2.39 -0.02 2.64 16 38 H 0.15 2.55 6.18 -2.39 -0.01 2.53 16 39 H 0.15 2.07 6.02 -2.91 -0.02 2.05 16 40 H 0.15 1.31 8.06 -2.91 -0.02 1.29 16 41 H 0.15 1.30 8.06 -2.91 -0.02 1.28 16 42 H 0.15 2.08 6.30 -2.91 -0.02 2.06 16 43 H 0.07 1.04 7.68 -2.39 -0.02 1.02 16 44 H 0.10 1.79 8.14 -2.39 -0.02 1.77 16 45 H 0.07 1.04 7.65 -2.39 -0.02 1.02 16 Total: -1.00 -82.39 379.07 5.99 -76.39 By element: Atomic # 1 Polarization: 18.81 SS G_CDS: 0.98 Total: 19.79 kcal Atomic # 6 Polarization: -17.89 SS G_CDS: 5.67 Total: -12.22 kcal Atomic # 7 Polarization: -84.97 SS G_CDS: -1.74 Total: -86.71 kcal Atomic # 8 Polarization: -44.33 SS G_CDS: -0.94 Total: -45.28 kcal Atomic # 14 Polarization: 46.00 SS G_CDS: 2.03 Total: 48.02 kcal Total: -82.39 5.99 -76.39 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000412352974.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.073 kcal (2) G-P(sol) polarization free energy of solvation -82.385 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.313 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.994 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.392 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.319 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds