Wall clock time and date at job start Tue Mar 31 2020 11:52:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31508 * 1 3 3 Si 1.86801 * 120.00343 * 2 1 4 4 H 1.48495 * 109.47212 * 239.99917 * 3 2 1 5 5 H 1.48501 * 109.47031 * 0.02562 * 3 2 1 6 6 H 1.48502 * 109.47157 * 119.99658 * 3 2 1 7 7 C 1.37877 * 119.99595 * 179.97438 * 2 1 3 8 8 H 1.08006 * 119.99803 * 179.97438 * 7 2 1 9 9 C 1.50702 * 120.00392 * 0.02562 * 7 2 1 10 10 N 1.46500 * 109.47041 * 179.97438 * 9 7 2 11 11 C 1.46501 * 119.99636 * 269.99381 * 10 9 7 12 12 C 1.53006 * 109.47103 * 270.00027 * 11 10 9 13 13 C 1.52995 * 117.50118 * 243.62303 * 12 11 10 14 14 C 1.52998 * 117.49710 * 174.99848 * 12 11 10 15 15 C 1.34773 * 120.00177 * 89.99986 * 10 9 7 16 16 O 1.21595 * 120.00282 * 359.97438 * 15 10 9 17 17 N 1.34775 * 120.00218 * 179.97438 * 15 10 9 18 18 C 1.40195 * 120.00122 * 185.29877 * 17 15 10 19 19 C 1.38856 * 120.15814 * 213.14386 * 18 17 15 20 20 C 1.37788 * 120.15899 * 180.02562 * 19 18 17 21 21 C 1.39665 * 120.37023 * 0.02562 * 20 19 18 22 22 C 1.38573 * 119.14607 * 359.97438 * 21 20 19 23 23 C 1.38157 * 120.54092 * 0.02562 * 22 21 20 24 24 C 1.51232 * 108.55768 * 179.97438 * 22 21 20 25 25 C 1.53733 * 104.58193 * 0.02562 * 24 22 21 26 26 N 1.39847 * 129.24934 * 179.97438 * 21 20 19 27 27 H 0.97006 * 119.99617 * 0.02562 * 1 2 3 28 28 H 1.09000 * 109.47100 * 59.99374 * 9 7 2 29 29 H 1.09004 * 109.46563 * 299.99535 * 9 7 2 30 30 H 1.08996 * 109.47493 * 30.00288 * 11 10 9 31 31 H 1.08996 * 109.46720 * 150.00515 * 11 10 9 32 32 H 1.08995 * 115.54543 * 29.33919 * 12 11 10 33 33 H 1.09006 * 117.49821 * 0.02562 * 13 12 11 34 34 H 1.08998 * 117.49750 * 145.02457 * 13 12 11 35 35 H 1.08993 * 117.50372 * 214.98003 * 14 12 11 36 36 H 1.09005 * 117.49474 * 0.02562 * 14 12 11 37 37 H 0.97005 * 120.00120 * 5.30866 * 17 15 10 38 38 H 1.08003 * 119.92204 * 0.04348 * 19 18 17 39 39 H 1.07997 * 119.81598 * 180.02562 * 20 19 18 40 40 H 1.07998 * 119.95094 * 180.02562 * 23 22 21 41 41 H 1.09002 * 110.41116 * 118.78115 * 24 22 21 42 42 H 1.08999 * 110.41236 * 241.22567 * 24 22 21 43 43 H 1.09001 * 110.29436 * 241.06513 * 25 24 22 44 44 H 1.08999 * 110.29778 * 118.93235 * 25 24 22 45 45 H 0.97011 * 124.97384 * 359.75430 * 26 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1029 1.6963 -1.2124 5 1 1.2842 2.7465 0.0006 6 1 3.1029 1.6963 1.2125 7 6 2.0044 -1.1941 0.0005 8 1 3.0844 -1.1941 0.0001 9 6 1.2509 -2.4992 0.0005 10 7 2.2029 -3.6127 0.0005 11 6 2.6787 -4.1695 -1.2683 12 6 1.7479 -5.3008 -1.7098 13 6 2.3398 -6.7088 -1.7982 14 6 2.0082 -5.9367 -3.0768 15 6 2.6408 -4.1249 1.1677 16 8 2.2461 -3.6626 2.2208 17 7 3.5162 -5.1496 1.1677 18 6 3.8865 -5.7553 2.3766 19 6 5.1684 -6.2639 2.5382 20 6 5.5322 -6.8596 3.7262 21 6 4.6167 -6.9576 4.7764 22 6 3.3393 -6.4477 4.6079 23 6 2.9732 -5.8502 3.4172 24 6 2.5564 -6.6805 5.8807 25 6 3.5444 -7.3938 6.8179 26 7 4.7840 -7.5183 6.0466 27 1 -0.4850 0.8401 -0.0004 28 1 0.6245 -2.5571 -0.8896 29 1 0.6239 -2.5567 0.8904 30 1 2.6865 -3.3879 -2.0279 31 1 3.6881 -4.5595 -1.1379 32 1 0.7111 -5.2096 -1.3863 33 1 3.3923 -6.8294 -1.5413 34 1 1.6924 -7.5445 -1.5326 35 1 1.1426 -6.2646 -3.6524 36 1 2.8428 -5.5495 -3.6613 37 1 3.8902 -5.4681 0.3312 38 1 5.8822 -6.1922 1.7308 39 1 6.5308 -7.2530 3.8459 40 1 1.9752 -5.4557 3.2964 41 1 2.2416 -5.7305 6.3125 42 1 1.6921 -7.3151 5.6847 43 1 3.1659 -8.3801 7.0865 44 1 3.7145 -6.7964 7.7135 45 1 5.6000 -7.9326 6.3685 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000415838864.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:52:23 Heat of formation + Delta-G solvation = 43.024323 kcal Electronic energy + Delta-G solvation = -26148.743901 eV Core-core repulsion = 22553.294085 eV Total energy + Delta-G solvation = -3595.449816 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 315.169 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -40.44037 -39.44389 -37.39622 -36.36028 -34.37527 -33.49199 -32.37407 -31.72918 -28.74310 -28.30371 -27.50782 -25.91116 -23.45274 -22.62201 -22.28245 -21.72454 -20.93748 -20.72672 -19.16206 -17.87166 -17.11923 -16.63691 -16.39205 -15.58154 -15.53137 -15.05714 -14.87742 -14.69142 -14.08332 -13.98647 -13.61045 -13.37710 -13.05448 -12.62956 -12.59310 -12.43346 -12.24329 -12.08645 -12.07388 -11.87785 -11.50129 -11.43700 -11.16740 -10.94636 -10.84816 -10.58145 -10.40050 -10.30882 -10.06169 -9.86041 -9.59613 -9.17527 -8.92594 -8.45081 -8.38762 -7.67739 -6.83852 -5.99907 -4.04174 1.61200 1.80523 3.28647 3.35139 3.39449 3.43333 3.49049 3.80452 3.88734 4.19883 4.42540 4.53814 4.69744 4.78695 4.92354 5.01946 5.06088 5.19197 5.23952 5.31474 5.34311 5.42289 5.48355 5.61060 5.68233 5.72630 5.82438 5.90467 5.96617 5.98780 6.04810 6.16800 6.20192 6.27179 6.44871 6.52161 6.68353 6.78819 6.96287 7.05215 7.41708 7.48905 7.57493 7.76679 7.87503 7.99071 8.28164 8.68281 8.96747 9.35458 9.61435 11.07868 Molecular weight = 315.17amu Principal moments of inertia in cm(-1) A = 0.011330 B = 0.003919 C = 0.003202 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2470.629107 B = 7142.534401 C = 8741.190144 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C 0.062 3.938 3 Si 0.897 3.103 4 H -0.277 1.277 5 H -0.287 1.287 6 H -0.277 1.277 7 C -0.526 4.526 8 H 0.056 0.944 9 C 0.262 3.738 10 N -0.606 5.606 11 C 0.144 3.856 12 C -0.165 4.165 13 C -0.183 4.183 14 C -0.176 4.176 15 C 0.700 3.300 16 O -0.570 6.570 17 N -0.692 5.692 18 C 0.135 3.865 19 C -0.112 4.112 20 C -0.161 4.161 21 C 0.166 3.834 22 C -0.151 4.151 23 C -0.062 4.062 24 C -0.084 4.084 25 C 0.123 3.877 26 N -0.753 5.753 27 H 0.263 0.737 28 H 0.034 0.966 29 H 0.044 0.956 30 H 0.090 0.910 31 H 0.059 0.941 32 H 0.109 0.891 33 H 0.090 0.910 34 H 0.090 0.910 35 H 0.092 0.908 36 H 0.094 0.906 37 H 0.398 0.602 38 H 0.122 0.878 39 H 0.116 0.884 40 H 0.137 0.863 41 H 0.084 0.916 42 H 0.081 0.919 43 H 0.061 0.939 44 H 0.062 0.938 45 H 0.407 0.593 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.267 -18.321 3.735 20.444 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.534 5.534 2 C -0.140 4.140 3 Si 0.725 3.275 4 H -0.203 1.203 5 H -0.212 1.212 6 H -0.202 1.202 7 C -0.565 4.565 8 H 0.074 0.926 9 C 0.142 3.858 10 N -0.340 5.340 11 C 0.019 3.981 12 C -0.185 4.185 13 C -0.220 4.220 14 C -0.214 4.214 15 C 0.402 3.598 16 O -0.446 6.446 17 N -0.342 5.342 18 C 0.038 3.962 19 C -0.133 4.133 20 C -0.184 4.184 21 C 0.064 3.936 22 C -0.156 4.156 23 C -0.083 4.083 24 C -0.122 4.122 25 C -0.002 4.002 26 N -0.388 5.388 27 H 0.073 0.927 28 H 0.052 0.948 29 H 0.062 0.938 30 H 0.109 0.891 31 H 0.077 0.923 32 H 0.127 0.873 33 H 0.108 0.892 34 H 0.109 0.891 35 H 0.110 0.890 36 H 0.112 0.888 37 H 0.234 0.766 38 H 0.140 0.860 39 H 0.134 0.866 40 H 0.154 0.846 41 H 0.103 0.897 42 H 0.100 0.900 43 H 0.079 0.921 44 H 0.080 0.920 45 H 0.244 0.756 Dipole moment (debyes) X Y Z Total from point charges 7.638 -17.775 4.573 19.880 hybrid contribution 1.068 0.653 -0.386 1.310 sum 8.706 -17.122 4.187 19.659 Atomic orbital electron populations 1.69921 1.05945 1.27038 1.50538 1.24904 0.94852 0.99094 0.95131 0.86581 0.79535 0.82838 0.78593 1.20306 1.21215 1.20227 1.21434 0.93346 0.90778 1.50939 0.92571 1.19211 0.86808 0.81294 0.98443 1.47526 1.47809 1.36419 1.02220 1.20947 0.94327 0.94869 0.87934 1.22976 1.01635 0.93772 1.00075 1.23006 1.01245 0.95395 1.02402 1.22902 1.03374 1.04373 0.90737 1.15917 0.79572 0.79239 0.85069 1.90899 1.61101 1.62665 1.29911 1.42869 1.48101 1.35716 1.07539 1.17144 0.92683 0.98948 0.87380 1.20430 0.93929 1.01432 0.97532 1.19955 0.98728 1.07247 0.92482 1.18270 0.94299 0.94651 0.86389 1.19676 0.94760 1.05153 0.96017 1.20397 1.00180 0.96672 0.91088 1.21005 0.97604 1.01184 0.92357 1.21689 0.84489 0.99547 0.94458 1.44614 1.14532 1.67106 1.12588 0.92721 0.94808 0.93753 0.89141 0.92310 0.87265 0.89196 0.89138 0.88975 0.88761 0.76571 0.86020 0.86617 0.84568 0.89740 0.90011 0.92086 0.92019 0.75596 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.64 13.29 55.43 0.74 -25.90 16 2 C 0.06 1.78 5.46 -17.82 -0.10 1.69 16 3 Si 0.90 22.08 29.54 -169.99 -5.02 17.06 16 4 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 5 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 6 H -0.28 -6.90 7.11 56.52 0.40 -6.50 16 7 C -0.53 -14.97 9.39 -34.44 -0.32 -15.29 16 8 H 0.06 1.61 7.81 -52.48 -0.41 1.20 16 9 C 0.26 6.81 5.16 -5.19 -0.03 6.79 16 10 N -0.61 -12.83 2.46 -180.80 -0.44 -13.28 16 11 C 0.14 2.32 5.50 -4.04 -0.02 2.30 16 12 C -0.16 -2.29 6.01 -90.62 -0.54 -2.83 16 13 C -0.18 -2.04 10.18 -26.73 -0.27 -2.31 16 14 C -0.18 -1.95 10.25 -26.73 -0.27 -2.22 16 15 C 0.70 15.15 8.02 -86.92 -0.70 14.45 16 16 O -0.57 -14.76 13.61 5.28 0.07 -14.69 16 17 N -0.69 -11.70 5.23 -14.19 -0.07 -11.78 16 18 C 0.14 2.23 6.29 -83.60 -0.53 1.71 16 19 C -0.11 -1.53 9.94 -39.52 -0.39 -1.92 16 20 C -0.16 -2.05 10.07 -39.21 -0.39 -2.44 16 21 C 0.17 2.22 7.03 -83.54 -0.59 1.63 16 22 C -0.15 -2.25 6.22 -104.27 -0.65 -2.90 16 23 C -0.06 -1.08 8.66 -39.41 -0.34 -1.42 16 24 C -0.08 -0.98 6.94 -27.24 -0.19 -1.17 16 25 C 0.12 1.15 7.96 -3.65 -0.03 1.12 16 26 N -0.75 -7.88 6.54 -58.07 -0.38 -8.26 16 27 H 0.26 7.42 8.31 -40.82 -0.34 7.08 16 28 H 0.03 0.89 8.07 -51.93 -0.42 0.47 16 29 H 0.04 1.31 7.42 -51.93 -0.39 0.92 16 30 H 0.09 1.52 8.07 -51.93 -0.42 1.10 16 31 H 0.06 0.80 6.02 -51.93 -0.31 0.48 16 32 H 0.11 1.73 8.14 -51.93 -0.42 1.30 16 33 H 0.09 0.89 7.91 -51.93 -0.41 0.47 16 34 H 0.09 0.97 8.14 -51.93 -0.42 0.55 16 35 H 0.09 0.95 8.14 -51.93 -0.42 0.53 16 36 H 0.09 0.95 8.14 -51.93 -0.42 0.52 16 37 H 0.40 5.51 6.39 -40.82 -0.26 5.25 16 38 H 0.12 1.37 8.06 -52.48 -0.42 0.94 16 39 H 0.12 1.18 8.06 -52.49 -0.42 0.75 16 40 H 0.14 2.68 6.41 -52.49 -0.34 2.34 16 41 H 0.08 0.99 8.14 -51.93 -0.42 0.56 16 42 H 0.08 0.85 8.14 -51.93 -0.42 0.43 16 43 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 44 H 0.06 0.51 8.14 -51.93 -0.42 0.08 16 45 H 0.41 3.25 8.96 -40.82 -0.37 2.88 16 LS Contribution 371.70 15.07 5.60 5.60 Total: -1.00 -33.85 371.70 -11.56 -45.41 By element: Atomic # 1 Polarization: 15.35 SS G_CDS: -6.68 Total: 8.67 kcal Atomic # 6 Polarization: 2.52 SS G_CDS: -5.37 Total: -2.84 kcal Atomic # 7 Polarization: -59.05 SS G_CDS: -0.16 Total: -59.21 kcal Atomic # 8 Polarization: -14.76 SS G_CDS: 0.07 Total: -14.69 kcal Atomic # 14 Polarization: 22.08 SS G_CDS: -5.02 Total: 17.06 kcal Total LS contribution 5.60 Total: 5.60 kcal Total: -33.85 -11.56 -45.41 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000415838864.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.431 kcal (2) G-P(sol) polarization free energy of solvation -33.848 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 54.584 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.559 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.407 kcal (6) G-S(sol) free energy of system = (1) + (5) 43.024 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds