Wall clock time and date at job start Tue Mar 31 2020 11:52:23
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.31508 * 1
3 3 Si 1.86801 * 120.00343 * 2 1
4 4 H 1.48495 * 109.47212 * 239.99917 * 3 2 1
5 5 H 1.48501 * 109.47031 * 0.02562 * 3 2 1
6 6 H 1.48502 * 109.47157 * 119.99658 * 3 2 1
7 7 C 1.37877 * 119.99595 * 179.97438 * 2 1 3
8 8 H 1.08006 * 119.99803 * 179.97438 * 7 2 1
9 9 C 1.50702 * 120.00392 * 0.02562 * 7 2 1
10 10 N 1.46500 * 109.47041 * 179.97438 * 9 7 2
11 11 C 1.46501 * 119.99636 * 269.99381 * 10 9 7
12 12 C 1.53006 * 109.47103 * 270.00027 * 11 10 9
13 13 C 1.52995 * 117.50118 * 243.62303 * 12 11 10
14 14 C 1.52998 * 117.49710 * 174.99848 * 12 11 10
15 15 C 1.34773 * 120.00177 * 89.99986 * 10 9 7
16 16 O 1.21595 * 120.00282 * 359.97438 * 15 10 9
17 17 N 1.34775 * 120.00218 * 179.97438 * 15 10 9
18 18 C 1.40195 * 120.00122 * 185.29877 * 17 15 10
19 19 C 1.38856 * 120.15814 * 213.14386 * 18 17 15
20 20 C 1.37788 * 120.15899 * 180.02562 * 19 18 17
21 21 C 1.39665 * 120.37023 * 0.02562 * 20 19 18
22 22 C 1.38573 * 119.14607 * 359.97438 * 21 20 19
23 23 C 1.38157 * 120.54092 * 0.02562 * 22 21 20
24 24 C 1.51232 * 108.55768 * 179.97438 * 22 21 20
25 25 C 1.53733 * 104.58193 * 0.02562 * 24 22 21
26 26 N 1.39847 * 129.24934 * 179.97438 * 21 20 19
27 27 H 0.97006 * 119.99617 * 0.02562 * 1 2 3
28 28 H 1.09000 * 109.47100 * 59.99374 * 9 7 2
29 29 H 1.09004 * 109.46563 * 299.99535 * 9 7 2
30 30 H 1.08996 * 109.47493 * 30.00288 * 11 10 9
31 31 H 1.08996 * 109.46720 * 150.00515 * 11 10 9
32 32 H 1.08995 * 115.54543 * 29.33919 * 12 11 10
33 33 H 1.09006 * 117.49821 * 0.02562 * 13 12 11
34 34 H 1.08998 * 117.49750 * 145.02457 * 13 12 11
35 35 H 1.08993 * 117.50372 * 214.98003 * 14 12 11
36 36 H 1.09005 * 117.49474 * 0.02562 * 14 12 11
37 37 H 0.97005 * 120.00120 * 5.30866 * 17 15 10
38 38 H 1.08003 * 119.92204 * 0.04348 * 19 18 17
39 39 H 1.07997 * 119.81598 * 180.02562 * 20 19 18
40 40 H 1.07998 * 119.95094 * 180.02562 * 23 22 21
41 41 H 1.09002 * 110.41116 * 118.78115 * 24 22 21
42 42 H 1.08999 * 110.41236 * 241.22567 * 24 22 21
43 43 H 1.09001 * 110.29436 * 241.06513 * 25 24 22
44 44 H 1.08999 * 110.29778 * 118.93235 * 25 24 22
45 45 H 0.97011 * 124.97384 * 359.75430 * 26 21 20
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3151 0.0000 0.0000
3 14 2.2492 1.6177 0.0000
4 1 3.1029 1.6963 -1.2124
5 1 1.2842 2.7465 0.0006
6 1 3.1029 1.6963 1.2125
7 6 2.0044 -1.1941 0.0005
8 1 3.0844 -1.1941 0.0001
9 6 1.2509 -2.4992 0.0005
10 7 2.2029 -3.6127 0.0005
11 6 2.6787 -4.1695 -1.2683
12 6 1.7479 -5.3008 -1.7098
13 6 2.3398 -6.7088 -1.7982
14 6 2.0082 -5.9367 -3.0768
15 6 2.6408 -4.1249 1.1677
16 8 2.2461 -3.6626 2.2208
17 7 3.5162 -5.1496 1.1677
18 6 3.8865 -5.7553 2.3766
19 6 5.1684 -6.2639 2.5382
20 6 5.5322 -6.8596 3.7262
21 6 4.6167 -6.9576 4.7764
22 6 3.3393 -6.4477 4.6079
23 6 2.9732 -5.8502 3.4172
24 6 2.5564 -6.6805 5.8807
25 6 3.5444 -7.3938 6.8179
26 7 4.7840 -7.5183 6.0466
27 1 -0.4850 0.8401 -0.0004
28 1 0.6245 -2.5571 -0.8896
29 1 0.6239 -2.5567 0.8904
30 1 2.6865 -3.3879 -2.0279
31 1 3.6881 -4.5595 -1.1379
32 1 0.7111 -5.2096 -1.3863
33 1 3.3923 -6.8294 -1.5413
34 1 1.6924 -7.5445 -1.5326
35 1 1.1426 -6.2646 -3.6524
36 1 2.8428 -5.5495 -3.6613
37 1 3.8902 -5.4681 0.3312
38 1 5.8822 -6.1922 1.7308
39 1 6.5308 -7.2530 3.8459
40 1 1.9752 -5.4557 3.2964
41 1 2.2416 -5.7305 6.3125
42 1 1.6921 -7.3151 5.6847
43 1 3.1659 -8.3801 7.0865
44 1 3.7145 -6.7964 7.7135
45 1 5.6000 -7.9326 6.3685
RHF calculation, no. of doubly occupied orbitals= 59
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000415838864.mol2 45
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 11:52:23
Heat of formation + Delta-G solvation = 43.024323 kcal
Electronic energy + Delta-G solvation = -26148.743901 eV
Core-core repulsion = 22553.294085 eV
Total energy + Delta-G solvation = -3595.449816 eV
No. of doubly occupied orbitals = 59
Molecular weight
(most abundant/longest-lived isotopes) = 315.169 amu
Computer time = 0.70 seconds
Orbital eigenvalues (eV)
-40.44037 -39.44389 -37.39622 -36.36028 -34.37527 -33.49199 -32.37407 -31.72918
-28.74310 -28.30371 -27.50782 -25.91116 -23.45274 -22.62201 -22.28245 -21.72454
-20.93748 -20.72672 -19.16206 -17.87166 -17.11923 -16.63691 -16.39205 -15.58154
-15.53137 -15.05714 -14.87742 -14.69142 -14.08332 -13.98647 -13.61045 -13.37710
-13.05448 -12.62956 -12.59310 -12.43346 -12.24329 -12.08645 -12.07388 -11.87785
-11.50129 -11.43700 -11.16740 -10.94636 -10.84816 -10.58145 -10.40050 -10.30882
-10.06169 -9.86041 -9.59613 -9.17527 -8.92594 -8.45081 -8.38762 -7.67739
-6.83852 -5.99907 -4.04174 1.61200 1.80523 3.28647 3.35139 3.39449
3.43333 3.49049 3.80452 3.88734 4.19883 4.42540 4.53814 4.69744
4.78695 4.92354 5.01946 5.06088 5.19197 5.23952 5.31474 5.34311
5.42289 5.48355 5.61060 5.68233 5.72630 5.82438 5.90467 5.96617
5.98780 6.04810 6.16800 6.20192 6.27179 6.44871 6.52161 6.68353
6.78819 6.96287 7.05215 7.41708 7.48905 7.57493 7.76679 7.87503
7.99071 8.28164 8.68281 8.96747 9.35458 9.61435 11.07868
Molecular weight = 315.17amu
Principal moments of inertia in cm(-1)
A = 0.011330 B = 0.003919 C = 0.003202
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2470.629107 B = 7142.534401 C = 8741.190144
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.895 5.895
2 C 0.062 3.938
3 Si 0.897 3.103
4 H -0.277 1.277
5 H -0.287 1.287
6 H -0.277 1.277
7 C -0.526 4.526
8 H 0.056 0.944
9 C 0.262 3.738
10 N -0.606 5.606
11 C 0.144 3.856
12 C -0.165 4.165
13 C -0.183 4.183
14 C -0.176 4.176
15 C 0.700 3.300
16 O -0.570 6.570
17 N -0.692 5.692
18 C 0.135 3.865
19 C -0.112 4.112
20 C -0.161 4.161
21 C 0.166 3.834
22 C -0.151 4.151
23 C -0.062 4.062
24 C -0.084 4.084
25 C 0.123 3.877
26 N -0.753 5.753
27 H 0.263 0.737
28 H 0.034 0.966
29 H 0.044 0.956
30 H 0.090 0.910
31 H 0.059 0.941
32 H 0.109 0.891
33 H 0.090 0.910
34 H 0.090 0.910
35 H 0.092 0.908
36 H 0.094 0.906
37 H 0.398 0.602
38 H 0.122 0.878
39 H 0.116 0.884
40 H 0.137 0.863
41 H 0.084 0.916
42 H 0.081 0.919
43 H 0.061 0.939
44 H 0.062 0.938
45 H 0.407 0.593
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 8.267 -18.321 3.735 20.444
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.534 5.534
2 C -0.140 4.140
3 Si 0.725 3.275
4 H -0.203 1.203
5 H -0.212 1.212
6 H -0.202 1.202
7 C -0.565 4.565
8 H 0.074 0.926
9 C 0.142 3.858
10 N -0.340 5.340
11 C 0.019 3.981
12 C -0.185 4.185
13 C -0.220 4.220
14 C -0.214 4.214
15 C 0.402 3.598
16 O -0.446 6.446
17 N -0.342 5.342
18 C 0.038 3.962
19 C -0.133 4.133
20 C -0.184 4.184
21 C 0.064 3.936
22 C -0.156 4.156
23 C -0.083 4.083
24 C -0.122 4.122
25 C -0.002 4.002
26 N -0.388 5.388
27 H 0.073 0.927
28 H 0.052 0.948
29 H 0.062 0.938
30 H 0.109 0.891
31 H 0.077 0.923
32 H 0.127 0.873
33 H 0.108 0.892
34 H 0.109 0.891
35 H 0.110 0.890
36 H 0.112 0.888
37 H 0.234 0.766
38 H 0.140 0.860
39 H 0.134 0.866
40 H 0.154 0.846
41 H 0.103 0.897
42 H 0.100 0.900
43 H 0.079 0.921
44 H 0.080 0.920
45 H 0.244 0.756
Dipole moment (debyes) X Y Z Total
from point charges 7.638 -17.775 4.573 19.880
hybrid contribution 1.068 0.653 -0.386 1.310
sum 8.706 -17.122 4.187 19.659
Atomic orbital electron populations
1.69921 1.05945 1.27038 1.50538 1.24904 0.94852 0.99094 0.95131
0.86581 0.79535 0.82838 0.78593 1.20306 1.21215 1.20227 1.21434
0.93346 0.90778 1.50939 0.92571 1.19211 0.86808 0.81294 0.98443
1.47526 1.47809 1.36419 1.02220 1.20947 0.94327 0.94869 0.87934
1.22976 1.01635 0.93772 1.00075 1.23006 1.01245 0.95395 1.02402
1.22902 1.03374 1.04373 0.90737 1.15917 0.79572 0.79239 0.85069
1.90899 1.61101 1.62665 1.29911 1.42869 1.48101 1.35716 1.07539
1.17144 0.92683 0.98948 0.87380 1.20430 0.93929 1.01432 0.97532
1.19955 0.98728 1.07247 0.92482 1.18270 0.94299 0.94651 0.86389
1.19676 0.94760 1.05153 0.96017 1.20397 1.00180 0.96672 0.91088
1.21005 0.97604 1.01184 0.92357 1.21689 0.84489 0.99547 0.94458
1.44614 1.14532 1.67106 1.12588 0.92721 0.94808 0.93753 0.89141
0.92310 0.87265 0.89196 0.89138 0.88975 0.88761 0.76571 0.86020
0.86617 0.84568 0.89740 0.90011 0.92086 0.92019 0.75596
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 12.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.90 -26.64 13.29 55.43 0.74 -25.90 16
2 C 0.06 1.78 5.46 -17.82 -0.10 1.69 16
3 Si 0.90 22.08 29.54 -169.99 -5.02 17.06 16
4 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16
5 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16
6 H -0.28 -6.90 7.11 56.52 0.40 -6.50 16
7 C -0.53 -14.97 9.39 -34.44 -0.32 -15.29 16
8 H 0.06 1.61 7.81 -52.48 -0.41 1.20 16
9 C 0.26 6.81 5.16 -5.19 -0.03 6.79 16
10 N -0.61 -12.83 2.46 -180.80 -0.44 -13.28 16
11 C 0.14 2.32 5.50 -4.04 -0.02 2.30 16
12 C -0.16 -2.29 6.01 -90.62 -0.54 -2.83 16
13 C -0.18 -2.04 10.18 -26.73 -0.27 -2.31 16
14 C -0.18 -1.95 10.25 -26.73 -0.27 -2.22 16
15 C 0.70 15.15 8.02 -86.92 -0.70 14.45 16
16 O -0.57 -14.76 13.61 5.28 0.07 -14.69 16
17 N -0.69 -11.70 5.23 -14.19 -0.07 -11.78 16
18 C 0.14 2.23 6.29 -83.60 -0.53 1.71 16
19 C -0.11 -1.53 9.94 -39.52 -0.39 -1.92 16
20 C -0.16 -2.05 10.07 -39.21 -0.39 -2.44 16
21 C 0.17 2.22 7.03 -83.54 -0.59 1.63 16
22 C -0.15 -2.25 6.22 -104.27 -0.65 -2.90 16
23 C -0.06 -1.08 8.66 -39.41 -0.34 -1.42 16
24 C -0.08 -0.98 6.94 -27.24 -0.19 -1.17 16
25 C 0.12 1.15 7.96 -3.65 -0.03 1.12 16
26 N -0.75 -7.88 6.54 -58.07 -0.38 -8.26 16
27 H 0.26 7.42 8.31 -40.82 -0.34 7.08 16
28 H 0.03 0.89 8.07 -51.93 -0.42 0.47 16
29 H 0.04 1.31 7.42 -51.93 -0.39 0.92 16
30 H 0.09 1.52 8.07 -51.93 -0.42 1.10 16
31 H 0.06 0.80 6.02 -51.93 -0.31 0.48 16
32 H 0.11 1.73 8.14 -51.93 -0.42 1.30 16
33 H 0.09 0.89 7.91 -51.93 -0.41 0.47 16
34 H 0.09 0.97 8.14 -51.93 -0.42 0.55 16
35 H 0.09 0.95 8.14 -51.93 -0.42 0.53 16
36 H 0.09 0.95 8.14 -51.93 -0.42 0.52 16
37 H 0.40 5.51 6.39 -40.82 -0.26 5.25 16
38 H 0.12 1.37 8.06 -52.48 -0.42 0.94 16
39 H 0.12 1.18 8.06 -52.49 -0.42 0.75 16
40 H 0.14 2.68 6.41 -52.49 -0.34 2.34 16
41 H 0.08 0.99 8.14 -51.93 -0.42 0.56 16
42 H 0.08 0.85 8.14 -51.93 -0.42 0.43 16
43 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16
44 H 0.06 0.51 8.14 -51.93 -0.42 0.08 16
45 H 0.41 3.25 8.96 -40.82 -0.37 2.88 16
LS Contribution 371.70 15.07 5.60 5.60
Total: -1.00 -33.85 371.70 -11.56 -45.41
By element:
Atomic # 1 Polarization: 15.35 SS G_CDS: -6.68 Total: 8.67 kcal
Atomic # 6 Polarization: 2.52 SS G_CDS: -5.37 Total: -2.84 kcal
Atomic # 7 Polarization: -59.05 SS G_CDS: -0.16 Total: -59.21 kcal
Atomic # 8 Polarization: -14.76 SS G_CDS: 0.07 Total: -14.69 kcal
Atomic # 14 Polarization: 22.08 SS G_CDS: -5.02 Total: 17.06 kcal
Total LS contribution 5.60 Total: 5.60 kcal
Total: -33.85 -11.56 -45.41 kcal
The number of atoms in the molecule is 45
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000415838864.mol2 45
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 88.431 kcal
(2) G-P(sol) polarization free energy of solvation -33.848 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 54.584 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.559 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.407 kcal
(6) G-S(sol) free energy of system = (1) + (5) 43.024 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.70 seconds