Wall clock time and date at job start Tue Mar 31 2020 11:52:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31508 * 1 3 3 Si 1.86801 * 120.00343 * 2 1 4 4 H 1.48495 * 109.47212 * 239.99917 * 3 2 1 5 5 H 1.48501 * 109.47031 * 0.02562 * 3 2 1 6 6 H 1.48502 * 109.47157 * 119.99658 * 3 2 1 7 7 C 1.37877 * 119.99595 * 179.97438 * 2 1 3 8 8 H 1.08006 * 119.99803 * 179.97438 * 7 2 1 9 9 C 1.50702 * 120.00392 * 0.02562 * 7 2 1 10 10 N 1.46500 * 109.47041 * 179.97438 * 9 7 2 11 11 C 1.46501 * 119.99636 * 269.99381 * 10 9 7 12 12 C 1.53006 * 109.47103 * 270.00027 * 11 10 9 13 13 C 1.52995 * 117.50118 * 243.62303 * 12 11 10 14 14 C 1.52998 * 117.49710 * 174.99848 * 12 11 10 15 15 C 1.34773 * 120.00177 * 89.99986 * 10 9 7 16 16 O 1.21595 * 120.00282 * 359.97438 * 15 10 9 17 17 N 1.34775 * 120.00218 * 179.97438 * 15 10 9 18 18 C 1.40195 * 120.00122 * 185.29877 * 17 15 10 19 19 C 1.38856 * 120.15814 * 213.14386 * 18 17 15 20 20 C 1.37788 * 120.15899 * 180.02562 * 19 18 17 21 21 C 1.39665 * 120.37023 * 0.02562 * 20 19 18 22 22 C 1.38573 * 119.14607 * 359.97438 * 21 20 19 23 23 C 1.38157 * 120.54092 * 0.02562 * 22 21 20 24 24 C 1.51232 * 108.55768 * 179.97438 * 22 21 20 25 25 C 1.53733 * 104.58193 * 0.02562 * 24 22 21 26 26 N 1.39847 * 129.24934 * 179.97438 * 21 20 19 27 27 H 0.97006 * 119.99617 * 0.02562 * 1 2 3 28 28 H 1.09000 * 109.47100 * 59.99374 * 9 7 2 29 29 H 1.09004 * 109.46563 * 299.99535 * 9 7 2 30 30 H 1.08996 * 109.47493 * 30.00288 * 11 10 9 31 31 H 1.08996 * 109.46720 * 150.00515 * 11 10 9 32 32 H 1.08995 * 115.54543 * 29.33919 * 12 11 10 33 33 H 1.09006 * 117.49821 * 0.02562 * 13 12 11 34 34 H 1.08998 * 117.49750 * 145.02457 * 13 12 11 35 35 H 1.08993 * 117.50372 * 214.98003 * 14 12 11 36 36 H 1.09005 * 117.49474 * 0.02562 * 14 12 11 37 37 H 0.97005 * 120.00120 * 5.30866 * 17 15 10 38 38 H 1.08003 * 119.92204 * 0.04348 * 19 18 17 39 39 H 1.07997 * 119.81598 * 180.02562 * 20 19 18 40 40 H 1.07998 * 119.95094 * 180.02562 * 23 22 21 41 41 H 1.09002 * 110.41116 * 118.78115 * 24 22 21 42 42 H 1.08999 * 110.41236 * 241.22567 * 24 22 21 43 43 H 1.09001 * 110.29436 * 241.06513 * 25 24 22 44 44 H 1.08999 * 110.29778 * 118.93235 * 25 24 22 45 45 H 0.97011 * 124.97384 * 359.75430 * 26 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1029 1.6963 -1.2124 5 1 1.2842 2.7465 0.0006 6 1 3.1029 1.6963 1.2125 7 6 2.0044 -1.1941 0.0005 8 1 3.0844 -1.1941 0.0001 9 6 1.2509 -2.4992 0.0005 10 7 2.2029 -3.6127 0.0005 11 6 2.6787 -4.1695 -1.2683 12 6 1.7479 -5.3008 -1.7098 13 6 2.3398 -6.7088 -1.7982 14 6 2.0082 -5.9367 -3.0768 15 6 2.6408 -4.1249 1.1677 16 8 2.2461 -3.6626 2.2208 17 7 3.5162 -5.1496 1.1677 18 6 3.8865 -5.7553 2.3766 19 6 5.1684 -6.2639 2.5382 20 6 5.5322 -6.8596 3.7262 21 6 4.6167 -6.9576 4.7764 22 6 3.3393 -6.4477 4.6079 23 6 2.9732 -5.8502 3.4172 24 6 2.5564 -6.6805 5.8807 25 6 3.5444 -7.3938 6.8179 26 7 4.7840 -7.5183 6.0466 27 1 -0.4850 0.8401 -0.0004 28 1 0.6245 -2.5571 -0.8896 29 1 0.6239 -2.5567 0.8904 30 1 2.6865 -3.3879 -2.0279 31 1 3.6881 -4.5595 -1.1379 32 1 0.7111 -5.2096 -1.3863 33 1 3.3923 -6.8294 -1.5413 34 1 1.6924 -7.5445 -1.5326 35 1 1.1426 -6.2646 -3.6524 36 1 2.8428 -5.5495 -3.6613 37 1 3.8902 -5.4681 0.3312 38 1 5.8822 -6.1922 1.7308 39 1 6.5308 -7.2530 3.8459 40 1 1.9752 -5.4557 3.2964 41 1 2.2416 -5.7305 6.3125 42 1 1.6921 -7.3151 5.6847 43 1 3.1659 -8.3801 7.0865 44 1 3.7145 -6.7964 7.7135 45 1 5.6000 -7.9326 6.3685 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000415838864.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:52:22 Heat of formation + Delta-G solvation = 21.923510 kcal Electronic energy + Delta-G solvation = -26149.658901 eV Core-core repulsion = 22553.294085 eV Total energy + Delta-G solvation = -3596.364816 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 315.169 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -41.74961 -40.73961 -38.55002 -37.59366 -36.08065 -34.99983 -34.28856 -32.77269 -30.07943 -29.61204 -28.90235 -27.50082 -25.17529 -23.92976 -23.18859 -22.73281 -22.14227 -21.93452 -20.65607 -19.30164 -18.57365 -18.21382 -18.00374 -16.77985 -16.62716 -16.40781 -16.29739 -16.07598 -15.74403 -15.18549 -14.85303 -14.64373 -14.48817 -14.27129 -13.77842 -13.67682 -13.56151 -13.46211 -13.19628 -12.95805 -12.90927 -12.77806 -12.58530 -12.53716 -12.29582 -12.19271 -12.03529 -11.78653 -11.54880 -11.27302 -11.08693 -10.71510 -10.62169 -10.12227 -9.62706 -9.42584 -8.20803 -7.89745 -6.34588 0.51050 0.62805 1.36766 1.41610 1.48522 1.80362 2.24169 2.41164 2.59960 2.84607 2.98115 3.08896 3.17957 3.75987 3.83971 3.84921 3.99857 4.12290 4.20527 4.25451 4.28438 4.37364 4.53341 4.62520 4.67461 4.77751 4.78848 4.82842 4.88165 4.97665 5.06447 5.08439 5.14139 5.19212 5.23700 5.29504 5.32708 5.42853 5.56184 5.59017 5.66485 5.83686 5.90741 6.08606 6.18132 6.34769 6.73901 7.10481 7.13277 7.32582 7.72265 8.86680 Molecular weight = 315.17amu Principal moments of inertia in cm(-1) A = 0.011330 B = 0.003919 C = 0.003202 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2470.629107 B = 7142.534401 C = 8741.190144 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.928 5.928 2 C 0.009 3.991 3 Si 0.966 3.034 4 H -0.259 1.259 5 H -0.277 1.277 6 H -0.281 1.281 7 C -0.543 4.543 8 H 0.052 0.948 9 C 0.282 3.718 10 N -0.610 5.610 11 C 0.144 3.856 12 C -0.195 4.195 13 C -0.166 4.166 14 C -0.156 4.156 15 C 0.695 3.305 16 O -0.624 6.624 17 N -0.670 5.670 18 C 0.101 3.899 19 C -0.100 4.100 20 C -0.158 4.158 21 C 0.170 3.830 22 C -0.176 4.176 23 C -0.088 4.088 24 C -0.090 4.090 25 C 0.125 3.875 26 N -0.742 5.742 27 H 0.267 0.733 28 H 0.025 0.975 29 H -0.004 1.004 30 H 0.081 0.919 31 H 0.090 0.910 32 H 0.079 0.921 33 H 0.111 0.889 34 H 0.094 0.906 35 H 0.100 0.900 36 H 0.112 0.888 37 H 0.414 0.586 38 H 0.153 0.847 39 H 0.152 0.848 40 H 0.096 0.904 41 H 0.075 0.925 42 H 0.088 0.912 43 H 0.087 0.913 44 H 0.078 0.922 45 H 0.423 0.577 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.725 -20.147 3.539 23.577 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.568 5.568 2 C -0.190 4.190 3 Si 0.791 3.209 4 H -0.183 1.183 5 H -0.202 1.202 6 H -0.206 1.206 7 C -0.582 4.582 8 H 0.070 0.930 9 C 0.160 3.840 10 N -0.344 5.344 11 C 0.021 3.979 12 C -0.214 4.214 13 C -0.203 4.203 14 C -0.194 4.194 15 C 0.397 3.603 16 O -0.504 6.504 17 N -0.321 5.321 18 C 0.005 3.995 19 C -0.121 4.121 20 C -0.181 4.181 21 C 0.066 3.934 22 C -0.181 4.181 23 C -0.109 4.109 24 C -0.128 4.128 25 C 0.001 3.999 26 N -0.378 5.378 27 H 0.076 0.924 28 H 0.043 0.957 29 H 0.014 0.986 30 H 0.099 0.901 31 H 0.108 0.892 32 H 0.097 0.903 33 H 0.129 0.871 34 H 0.113 0.887 35 H 0.118 0.882 36 H 0.130 0.870 37 H 0.253 0.747 38 H 0.170 0.830 39 H 0.170 0.830 40 H 0.114 0.886 41 H 0.093 0.907 42 H 0.107 0.893 43 H 0.105 0.895 44 H 0.096 0.904 45 H 0.262 0.738 Dipole moment (debyes) X Y Z Total from point charges 11.151 -19.685 4.360 23.040 hybrid contribution -0.021 1.108 -0.234 1.133 sum 11.129 -18.576 4.126 22.045 Atomic orbital electron populations 1.70046 1.07520 1.28164 1.51028 1.25823 0.95778 1.02905 0.94448 0.85492 0.78334 0.78202 0.78907 1.18325 1.20231 1.20638 1.21697 0.93228 0.92026 1.51211 0.93007 1.18604 0.87123 0.82694 0.95570 1.47344 1.47164 1.35616 1.04255 1.21167 0.96261 0.95263 0.85183 1.22685 0.99872 0.95186 1.03695 1.23127 1.02233 0.93304 1.01653 1.23022 1.04109 1.02414 0.89829 1.16105 0.80020 0.79954 0.84214 1.90855 1.63080 1.64606 1.31874 1.42472 1.46697 1.34121 1.08802 1.17411 0.94149 1.00911 0.87035 1.20733 0.92763 0.99773 0.98821 1.20369 1.00013 1.06125 0.91562 1.18488 0.93571 0.93672 0.87642 1.19949 0.96544 1.05465 0.96191 1.20264 0.99020 0.98490 0.93160 1.21126 0.98557 1.01376 0.91699 1.21814 0.83315 1.00856 0.93928 1.44677 1.15556 1.66138 1.11406 0.92420 0.95694 0.98573 0.90105 0.89166 0.90283 0.87101 0.88713 0.88160 0.86999 0.74711 0.82955 0.83041 0.88629 0.90664 0.89330 0.89521 0.90410 0.73772 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.24 13.29 21.45 0.28 -56.96 16 2 C 0.01 0.56 5.46 84.66 0.46 1.02 16 3 Si 0.97 45.96 29.54 68.60 2.03 47.99 16 4 H -0.26 -11.48 7.11 99.48 0.71 -10.77 16 5 H -0.28 -12.68 7.11 99.48 0.71 -11.97 16 6 H -0.28 -13.46 7.11 99.48 0.71 -12.76 16 7 C -0.54 -32.22 9.39 25.60 0.24 -31.98 16 8 H 0.05 3.05 7.81 -2.91 -0.02 3.02 16 9 C 0.28 15.77 5.16 85.63 0.44 16.21 16 10 N -0.61 -27.39 2.46 -844.18 -2.07 -29.47 16 11 C 0.14 4.69 5.50 86.38 0.48 5.17 16 12 C -0.19 -5.45 6.01 -10.79 -0.06 -5.51 16 13 C -0.17 -3.36 10.18 30.59 0.31 -3.05 16 14 C -0.16 -3.14 10.25 30.59 0.31 -2.83 16 15 C 0.70 31.93 8.02 179.06 1.44 33.36 16 16 O -0.62 -35.13 13.61 -4.02 -0.05 -35.19 16 17 N -0.67 -23.02 5.23 -317.05 -1.66 -24.68 16 18 C 0.10 3.36 6.29 38.08 0.24 3.60 16 19 C -0.10 -2.49 9.94 22.31 0.22 -2.27 16 20 C -0.16 -3.50 10.07 22.51 0.23 -3.28 16 21 C 0.17 4.21 7.03 38.29 0.27 4.48 16 22 C -0.18 -5.34 6.22 -19.63 -0.12 -5.46 16 23 C -0.09 -3.26 8.66 22.38 0.19 -3.06 16 24 C -0.09 -2.11 6.94 30.26 0.21 -1.90 16 25 C 0.13 2.03 7.96 86.62 0.69 2.71 16 26 N -0.74 -13.19 6.54 -337.64 -2.21 -15.40 16 27 H 0.27 15.45 8.31 -92.70 -0.77 14.68 16 28 H 0.03 1.42 8.07 -2.39 -0.02 1.40 16 29 H 0.00 -0.25 7.42 -2.38 -0.02 -0.27 16 30 H 0.08 2.76 8.07 -2.39 -0.02 2.74 16 31 H 0.09 2.31 6.02 -2.39 -0.01 2.29 16 32 H 0.08 2.69 8.14 -2.39 -0.02 2.67 16 33 H 0.11 1.79 7.91 -2.38 -0.02 1.77 16 34 H 0.09 1.86 8.14 -2.39 -0.02 1.84 16 35 H 0.10 1.87 8.14 -2.39 -0.02 1.86 16 36 H 0.11 1.89 8.14 -2.38 -0.02 1.87 16 37 H 0.41 10.95 6.39 -92.70 -0.59 10.36 16 38 H 0.15 2.80 8.06 -2.91 -0.02 2.78 16 39 H 0.15 2.30 8.06 -2.91 -0.02 2.27 16 40 H 0.10 4.24 6.41 -2.91 -0.02 4.22 16 41 H 0.07 1.85 8.14 -2.39 -0.02 1.83 16 42 H 0.09 1.88 8.14 -2.39 -0.02 1.86 16 43 H 0.09 1.02 8.14 -2.39 -0.02 1.00 16 44 H 0.08 1.06 8.14 -2.39 -0.02 1.04 16 45 H 0.42 5.04 8.96 -92.70 -0.83 4.21 16 Total: -1.00 -80.00 371.70 1.45 -78.55 By element: Atomic # 1 Polarization: 28.35 SS G_CDS: -0.41 Total: 27.94 kcal Atomic # 6 Polarization: 1.67 SS G_CDS: 5.54 Total: 7.21 kcal Atomic # 7 Polarization: -120.85 SS G_CDS: -5.66 Total: -126.50 kcal Atomic # 8 Polarization: -35.13 SS G_CDS: -0.05 Total: -35.19 kcal Atomic # 14 Polarization: 45.96 SS G_CDS: 2.03 Total: 47.99 kcal Total: -80.00 1.45 -78.55 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000415838864.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 100.475 kcal (2) G-P(sol) polarization free energy of solvation -80.004 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.471 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.453 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.551 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.924 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds