Wall clock time and date at job start Tue Mar 31 2020 11:52:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86797 * 120.00045 * 2 1 4 4 H 1.48505 * 109.46922 * 273.12908 * 3 2 1 5 5 H 1.48501 * 109.47256 * 33.13000 * 3 2 1 6 6 H 1.48500 * 109.47194 * 153.13156 * 3 2 1 7 7 C 1.37876 * 119.99839 * 179.97438 * 2 1 3 8 8 H 1.08008 * 120.00086 * 351.78262 * 7 2 1 9 9 C 1.50702 * 120.00044 * 172.06663 * 7 2 1 10 10 C 1.52999 * 115.54403 * 298.24915 * 9 7 2 11 11 N 1.46493 * 109.47580 * 298.33370 * 10 9 7 12 12 C 1.34777 * 120.00617 * 184.30330 * 11 10 9 13 13 O 1.21589 * 119.99470 * 5.72019 * 12 11 10 14 14 N 1.34776 * 120.00435 * 185.72451 * 12 11 10 15 15 C 1.39948 * 119.99953 * 189.90631 * 14 12 11 16 16 C 1.38895 * 120.13890 * 41.20144 * 15 14 12 17 17 C 1.37901 * 119.75407 * 180.02562 * 16 15 14 18 18 C 1.38741 * 120.45020 * 359.97438 * 17 16 15 19 19 C 1.37912 * 119.95207 * 359.80902 * 18 17 16 20 20 C 1.38611 * 119.79521 * 0.04980 * 19 18 17 21 21 C 1.50638 * 121.83517 * 180.53702 * 19 18 17 22 22 N 1.46625 * 110.49152 * 342.17077 * 21 19 18 23 23 C 1.47156 * 110.25202 * 52.62075 * 22 21 19 24 24 C 1.50737 * 118.42023 * 179.53754 * 18 17 16 25 25 C 1.52998 * 117.50038 * 152.58364 * 9 7 2 26 26 C 1.53000 * 117.50105 * 83.92146 * 9 7 2 27 27 H 0.96997 * 120.00201 * 359.97438 * 1 2 3 28 28 H 1.09005 * 109.47217 * 58.34012 * 10 9 7 29 29 H 1.09001 * 109.46875 * 178.33228 * 10 9 7 30 30 H 0.96999 * 119.99766 * 4.30437 * 11 10 9 31 31 H 0.96990 * 119.99788 * 9.90535 * 14 12 11 32 32 H 1.07998 * 120.12313 * 0.05750 * 16 15 14 33 33 H 1.08005 * 119.77422 * 180.02562 * 17 16 15 34 34 H 1.08010 * 119.83467 * 180.02562 * 20 19 18 35 35 H 1.09000 * 109.29833 * 102.48414 * 21 19 18 36 36 H 1.09005 * 109.29639 * 221.85754 * 21 19 18 37 37 H 1.00900 * 110.99762 * 289.20210 * 22 21 19 38 38 H 1.09002 * 109.62733 * 48.46565 * 23 22 21 39 39 H 1.08999 * 109.63136 * 168.85610 * 23 22 21 40 40 H 1.09003 * 109.38648 * 283.31415 * 24 18 17 41 41 H 1.08997 * 109.38539 * 43.00441 * 24 18 17 42 42 H 1.09000 * 117.50075 * 359.97438 * 25 9 7 43 43 H 1.08994 * 117.49661 * 145.01983 * 25 9 7 44 44 H 1.09003 * 117.49484 * 214.98245 * 26 9 7 45 45 H 1.08993 * 117.49665 * 359.97352 * 26 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4305 2.0846 -1.3981 5 1 1.4813 2.6327 0.7652 6 1 3.5783 1.4219 0.6328 7 6 2.0045 -1.1941 0.0005 8 1 1.4728 -2.1246 0.1346 9 6 3.5007 -1.2004 -0.1796 10 6 4.0077 -0.6359 -1.5082 11 7 3.4877 -1.4452 -2.6130 12 6 3.8740 -1.1866 -3.8780 13 8 4.7316 -0.3519 -4.0931 14 7 3.3097 -1.8530 -4.9046 15 6 3.8475 -1.7407 -6.1918 16 6 5.2243 -1.7460 -6.3752 17 6 5.7457 -1.6344 -7.6470 18 6 4.9044 -1.5172 -8.7440 19 6 3.5368 -1.5160 -8.5660 20 6 3.0083 -1.6310 -7.2898 21 6 2.5844 -1.4033 -9.7276 22 7 3.2779 -0.8865 -10.9116 23 6 4.4802 -1.6886 -11.1884 24 6 5.5235 -1.3873 -10.1122 25 6 4.2818 -2.3618 0.4385 26 6 4.3629 -0.9664 1.0625 27 1 -0.4850 0.8400 0.0004 28 1 3.6663 0.3933 -1.6196 29 1 5.0974 -0.6606 -1.5212 30 1 2.8653 -2.1674 -2.4340 31 1 2.5309 -2.4104 -4.7514 32 1 5.8840 -1.8379 -5.5251 33 1 6.8162 -1.6389 -7.7901 34 1 1.9373 -1.6306 -7.1496 35 1 2.1722 -2.3870 -9.9523 36 1 1.7714 -0.7273 -9.4625 37 1 3.5121 0.0882 -10.7968 38 1 4.2264 -2.7485 -11.1656 39 1 4.8764 -1.4280 -12.1698 40 1 5.8976 -0.3721 -10.2451 41 1 6.3509 -2.0910 -10.2033 42 1 3.7135 -3.1210 0.9758 43 1 5.1571 -2.7233 -0.1011 44 1 5.2915 -0.4104 0.9330 45 1 3.8479 -0.8073 2.0098 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000415893853.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:52:20 Heat of formation + Delta-G solvation = 21.783350 kcal Electronic energy + Delta-G solvation = -25695.951983 eV Core-core repulsion = 22099.581089 eV Total energy + Delta-G solvation = -3596.370894 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 315.169 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -40.63840 -39.52326 -37.43997 -36.61409 -34.25707 -33.48219 -32.54719 -32.25268 -30.28167 -28.78421 -26.70209 -25.18033 -24.50732 -23.27899 -22.40174 -21.70056 -21.02944 -19.84918 -19.29876 -18.05780 -17.40803 -16.59857 -16.34288 -15.76758 -15.22124 -15.03058 -15.01652 -14.73649 -14.40503 -14.14152 -13.98853 -13.67291 -13.47835 -13.30550 -12.98994 -12.77347 -12.59877 -12.34140 -12.18016 -11.89143 -11.85753 -11.35050 -11.11124 -11.04960 -10.75785 -10.63152 -10.32022 -10.02341 -9.92677 -9.56977 -9.23709 -8.90681 -8.82729 -8.77763 -8.54838 -8.40715 -7.91128 -6.24380 -4.26500 1.25447 1.31886 2.91336 3.25121 3.34546 3.37523 3.40956 3.79224 3.99574 4.33528 4.45582 4.53165 4.65463 4.72351 4.80899 4.89934 4.98280 5.15075 5.19587 5.29659 5.31214 5.50137 5.52511 5.57359 5.62119 5.67952 5.73769 5.90565 5.91275 6.08141 6.18344 6.20567 6.30548 6.40453 6.44536 6.51033 6.56104 6.65691 6.66889 6.85637 6.99725 7.02281 7.05287 7.12361 7.27087 7.61189 8.33613 8.37344 8.77358 8.89532 9.39716 10.86389 Molecular weight = 315.17amu Principal moments of inertia in cm(-1) A = 0.022356 B = 0.002868 C = 0.002718 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1252.140531 B = 9759.891276 C =10299.520319 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.890 5.890 2 C 0.085 3.915 3 Si 0.866 3.134 4 H -0.278 1.278 5 H -0.291 1.291 6 H -0.250 1.250 7 C -0.492 4.492 8 H 0.078 0.922 9 C -0.018 4.018 10 C 0.171 3.829 11 N -0.711 5.711 12 C 0.699 3.301 13 O -0.588 6.588 14 N -0.696 5.696 15 C 0.182 3.818 16 C -0.115 4.115 17 C -0.099 4.099 18 C -0.105 4.105 19 C -0.101 4.101 20 C -0.142 4.142 21 C 0.096 3.904 22 N -0.680 5.680 23 C 0.054 3.946 24 C -0.114 4.114 25 C -0.180 4.180 26 C -0.186 4.186 27 H 0.266 0.734 28 H 0.054 0.946 29 H 0.051 0.949 30 H 0.406 0.594 31 H 0.408 0.592 32 H 0.128 0.872 33 H 0.122 0.878 34 H 0.126 0.874 35 H 0.086 0.914 36 H 0.086 0.914 37 H 0.344 0.656 38 H 0.075 0.925 39 H 0.080 0.920 40 H 0.074 0.926 41 H 0.078 0.922 42 H 0.085 0.915 43 H 0.073 0.927 44 H 0.071 0.929 45 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.235 -5.336 -18.321 20.784 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.526 5.526 2 C -0.119 4.119 3 Si 0.694 3.306 4 H -0.204 1.204 5 H -0.218 1.218 6 H -0.173 1.173 7 C -0.529 4.529 8 H 0.096 0.904 9 C -0.019 4.019 10 C 0.047 3.953 11 N -0.364 5.364 12 C 0.400 3.600 13 O -0.466 6.466 14 N -0.344 5.344 15 C 0.087 3.913 16 C -0.136 4.136 17 C -0.117 4.117 18 C -0.106 4.106 19 C -0.103 4.103 20 C -0.163 4.163 21 C -0.034 4.034 22 N -0.307 5.307 23 C -0.075 4.075 24 C -0.152 4.152 25 C -0.217 4.217 26 C -0.224 4.224 27 H 0.076 0.924 28 H 0.072 0.928 29 H 0.069 0.931 30 H 0.241 0.759 31 H 0.244 0.756 32 H 0.146 0.854 33 H 0.139 0.861 34 H 0.144 0.856 35 H 0.104 0.896 36 H 0.104 0.896 37 H 0.161 0.839 38 H 0.094 0.906 39 H 0.099 0.901 40 H 0.092 0.908 41 H 0.096 0.904 42 H 0.104 0.896 43 H 0.091 0.909 44 H 0.089 0.911 45 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges 8.411 -4.789 -18.854 21.194 hybrid contribution 0.294 0.721 1.243 1.467 sum 8.706 -4.068 -17.611 20.062 Atomic orbital electron populations 1.69895 1.06391 1.27372 1.48966 1.24909 0.94495 0.99089 0.93440 0.87039 0.81497 0.83584 0.78496 1.20398 1.21805 1.17334 1.20229 0.86951 0.94734 1.50980 0.90378 1.19601 0.94682 0.98750 0.88880 1.20970 0.95935 0.93624 0.84765 1.45030 1.49923 1.37624 1.03788 1.16002 0.81974 0.81206 0.80860 1.90909 1.35231 1.36340 1.84098 1.42706 1.34326 1.51820 1.05592 1.17388 0.92255 0.98204 0.83456 1.21030 0.93972 1.01044 0.97522 1.20899 0.99374 0.99882 0.91567 1.19435 0.92655 1.03421 0.95125 1.20166 0.94128 1.00786 0.95216 1.20843 0.99572 1.04629 0.91298 1.20946 0.94926 1.01764 0.85715 1.61016 1.25365 1.07208 1.37085 1.22085 0.89035 0.98834 0.97565 1.21136 0.99255 1.02506 0.92346 1.22799 1.01790 0.91823 1.05293 1.23047 1.01172 0.98787 0.99411 0.92404 0.92750 0.93098 0.75884 0.75629 0.85444 0.86051 0.85597 0.89564 0.89559 0.83899 0.90630 0.90150 0.90766 0.90390 0.89625 0.90863 0.91079 0.89226 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.72 13.96 55.43 0.77 -24.95 16 2 C 0.08 2.29 5.46 -17.82 -0.10 2.20 16 3 Si 0.87 21.11 24.90 -169.99 -4.23 16.88 16 4 H -0.28 -6.96 6.95 56.52 0.39 -6.57 16 5 H -0.29 -7.15 7.11 56.52 0.40 -6.75 16 6 H -0.25 -5.73 5.90 56.52 0.33 -5.40 16 7 C -0.49 -12.60 9.00 -34.44 -0.31 -12.91 16 8 H 0.08 2.16 8.06 -52.48 -0.42 1.74 16 9 C -0.02 -0.39 0.90 -155.66 -0.14 -0.53 16 10 C 0.17 3.63 5.14 -4.05 -0.02 3.61 16 11 N -0.71 -13.54 5.46 -65.23 -0.36 -13.90 16 12 C 0.70 13.22 8.17 -86.92 -0.71 12.51 16 13 O -0.59 -13.07 14.82 5.29 0.08 -12.99 16 14 N -0.70 -10.43 5.33 -14.27 -0.08 -10.51 16 15 C 0.18 2.65 6.08 -83.76 -0.51 2.14 16 16 C -0.12 -1.68 8.68 -39.46 -0.34 -2.03 16 17 C -0.10 -1.21 9.64 -39.52 -0.38 -1.59 16 18 C -0.11 -1.17 5.78 -104.54 -0.60 -1.77 16 19 C -0.10 -1.12 5.79 -104.63 -0.61 -1.73 16 20 C -0.14 -1.76 9.57 -39.30 -0.38 -2.14 16 21 C 0.10 0.86 6.33 -5.16 -0.03 0.83 16 22 N -0.68 -5.72 6.96 -115.17 -0.80 -6.52 16 23 C 0.05 0.40 6.62 -3.74 -0.02 0.38 16 24 C -0.11 -0.92 5.82 -27.92 -0.16 -1.09 16 25 C -0.18 -3.38 9.95 -26.69 -0.27 -3.65 16 26 C -0.19 -3.72 8.32 -26.69 -0.22 -3.94 16 27 H 0.27 7.32 8.31 -40.82 -0.34 6.99 16 28 H 0.05 1.28 4.72 -51.93 -0.25 1.04 16 29 H 0.05 1.04 8.08 -51.93 -0.42 0.62 16 30 H 0.41 7.16 8.27 -40.82 -0.34 6.82 16 31 H 0.41 4.96 8.87 -40.82 -0.36 4.59 16 32 H 0.13 2.02 7.16 -52.49 -0.38 1.64 16 33 H 0.12 1.24 8.06 -52.48 -0.42 0.82 16 34 H 0.13 1.35 8.06 -52.48 -0.42 0.93 16 35 H 0.09 0.73 8.14 -51.93 -0.42 0.30 16 36 H 0.09 0.73 8.13 -51.93 -0.42 0.31 16 37 H 0.34 2.74 8.74 -39.29 -0.34 2.39 16 38 H 0.08 0.57 8.05 -51.93 -0.42 0.16 16 39 H 0.08 0.48 8.14 -51.93 -0.42 0.06 16 40 H 0.07 0.58 8.14 -51.93 -0.42 0.15 16 41 H 0.08 0.55 8.14 -51.93 -0.42 0.13 16 42 H 0.09 1.59 8.14 -51.93 -0.42 1.17 16 43 H 0.07 1.25 8.14 -51.93 -0.42 0.82 16 44 H 0.07 1.32 8.14 -51.93 -0.42 0.90 16 45 H 0.09 1.83 8.14 -51.93 -0.42 1.41 16 LS Contribution 362.27 15.07 5.46 5.46 Total: -1.00 -31.19 362.27 -10.75 -41.93 By element: Atomic # 1 Polarization: 21.06 SS G_CDS: -6.79 Total: 14.28 kcal Atomic # 6 Polarization: -4.88 SS G_CDS: -4.80 Total: -9.68 kcal Atomic # 7 Polarization: -55.41 SS G_CDS: -0.46 Total: -55.87 kcal Atomic # 8 Polarization: -13.07 SS G_CDS: 0.08 Total: -12.99 kcal Atomic # 14 Polarization: 21.11 SS G_CDS: -4.23 Total: 16.88 kcal Total LS contribution 5.46 Total: 5.46 kcal Total: -31.19 -10.75 -41.93 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000415893853.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.714 kcal (2) G-P(sol) polarization free energy of solvation -31.186 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.529 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.745 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.931 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.783 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds