Wall clock time and date at job start Tue Mar 31 2020 11:52:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86797 * 120.00045 * 2 1 4 4 H 1.48505 * 109.46922 * 273.12908 * 3 2 1 5 5 H 1.48501 * 109.47256 * 33.13000 * 3 2 1 6 6 H 1.48500 * 109.47194 * 153.13156 * 3 2 1 7 7 C 1.37876 * 119.99839 * 179.97438 * 2 1 3 8 8 H 1.08008 * 120.00086 * 351.78262 * 7 2 1 9 9 C 1.50702 * 120.00044 * 172.06663 * 7 2 1 10 10 C 1.52999 * 115.54403 * 298.24915 * 9 7 2 11 11 N 1.46493 * 109.47580 * 298.33370 * 10 9 7 12 12 C 1.34777 * 120.00617 * 184.30330 * 11 10 9 13 13 O 1.21589 * 119.99470 * 5.72019 * 12 11 10 14 14 N 1.34776 * 120.00435 * 185.72451 * 12 11 10 15 15 C 1.39948 * 119.99953 * 189.90631 * 14 12 11 16 16 C 1.38895 * 120.13890 * 41.20144 * 15 14 12 17 17 C 1.37901 * 119.75407 * 180.02562 * 16 15 14 18 18 C 1.38741 * 120.45020 * 359.97438 * 17 16 15 19 19 C 1.37912 * 119.95207 * 359.80902 * 18 17 16 20 20 C 1.38611 * 119.79521 * 0.04980 * 19 18 17 21 21 C 1.50638 * 121.83517 * 180.53702 * 19 18 17 22 22 N 1.46625 * 110.49152 * 342.17077 * 21 19 18 23 23 C 1.47156 * 110.25202 * 52.62075 * 22 21 19 24 24 C 1.50737 * 118.42023 * 179.53754 * 18 17 16 25 25 C 1.52998 * 117.50038 * 152.58364 * 9 7 2 26 26 C 1.53000 * 117.50105 * 83.92146 * 9 7 2 27 27 H 0.96997 * 120.00201 * 359.97438 * 1 2 3 28 28 H 1.09005 * 109.47217 * 58.34012 * 10 9 7 29 29 H 1.09001 * 109.46875 * 178.33228 * 10 9 7 30 30 H 0.96999 * 119.99766 * 4.30437 * 11 10 9 31 31 H 0.96990 * 119.99788 * 9.90535 * 14 12 11 32 32 H 1.07998 * 120.12313 * 0.05750 * 16 15 14 33 33 H 1.08005 * 119.77422 * 180.02562 * 17 16 15 34 34 H 1.08010 * 119.83467 * 180.02562 * 20 19 18 35 35 H 1.09000 * 109.29833 * 102.48414 * 21 19 18 36 36 H 1.09005 * 109.29639 * 221.85754 * 21 19 18 37 37 H 1.00900 * 110.99762 * 289.20210 * 22 21 19 38 38 H 1.09002 * 109.62733 * 48.46565 * 23 22 21 39 39 H 1.08999 * 109.63136 * 168.85610 * 23 22 21 40 40 H 1.09003 * 109.38648 * 283.31415 * 24 18 17 41 41 H 1.08997 * 109.38539 * 43.00441 * 24 18 17 42 42 H 1.09000 * 117.50075 * 359.97438 * 25 9 7 43 43 H 1.08994 * 117.49661 * 145.01983 * 25 9 7 44 44 H 1.09003 * 117.49484 * 214.98245 * 26 9 7 45 45 H 1.08993 * 117.49665 * 359.97352 * 26 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4305 2.0846 -1.3981 5 1 1.4813 2.6327 0.7652 6 1 3.5783 1.4219 0.6328 7 6 2.0045 -1.1941 0.0005 8 1 1.4728 -2.1246 0.1346 9 6 3.5007 -1.2004 -0.1796 10 6 4.0077 -0.6359 -1.5082 11 7 3.4877 -1.4452 -2.6130 12 6 3.8740 -1.1866 -3.8780 13 8 4.7316 -0.3519 -4.0931 14 7 3.3097 -1.8530 -4.9046 15 6 3.8475 -1.7407 -6.1918 16 6 5.2243 -1.7460 -6.3752 17 6 5.7457 -1.6344 -7.6470 18 6 4.9044 -1.5172 -8.7440 19 6 3.5368 -1.5160 -8.5660 20 6 3.0083 -1.6310 -7.2898 21 6 2.5844 -1.4033 -9.7276 22 7 3.2779 -0.8865 -10.9116 23 6 4.4802 -1.6886 -11.1884 24 6 5.5235 -1.3873 -10.1122 25 6 4.2818 -2.3618 0.4385 26 6 4.3629 -0.9664 1.0625 27 1 -0.4850 0.8400 0.0004 28 1 3.6663 0.3933 -1.6196 29 1 5.0974 -0.6606 -1.5212 30 1 2.8653 -2.1674 -2.4340 31 1 2.5309 -2.4104 -4.7514 32 1 5.8840 -1.8379 -5.5251 33 1 6.8162 -1.6389 -7.7901 34 1 1.9373 -1.6306 -7.1496 35 1 2.1722 -2.3870 -9.9523 36 1 1.7714 -0.7273 -9.4625 37 1 3.5121 0.0882 -10.7968 38 1 4.2264 -2.7485 -11.1656 39 1 4.8764 -1.4280 -12.1698 40 1 5.8976 -0.3721 -10.2451 41 1 6.3509 -2.0910 -10.2033 42 1 3.7135 -3.1210 0.9758 43 1 5.1571 -2.7233 -0.1011 44 1 5.2915 -0.4104 0.9330 45 1 3.8479 -0.8073 2.0098 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000415893853.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:52:18 Heat of formation + Delta-G solvation = -0.299915 kcal Electronic energy + Delta-G solvation = -25696.909585 eV Core-core repulsion = 22099.581089 eV Total energy + Delta-G solvation = -3597.328496 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 315.169 amu Computer time = 1.48 seconds Orbital eigenvalues (eV) -41.79111 -40.67490 -38.94294 -37.70545 -35.46775 -34.97639 -34.30199 -33.38243 -31.19320 -29.77373 -28.36925 -26.97266 -25.30687 -24.18334 -23.33287 -23.23847 -22.23406 -21.24891 -20.72536 -19.49892 -18.77596 -18.01505 -17.34142 -17.17535 -16.76800 -16.30209 -15.97571 -15.78691 -15.64380 -15.48564 -15.04890 -14.89282 -14.87374 -14.50055 -14.38293 -14.22733 -13.92396 -13.44768 -13.35274 -13.03201 -12.80530 -12.69202 -12.57536 -12.19952 -12.19470 -12.10872 -11.79859 -11.57517 -11.41033 -11.08336 -11.03661 -10.72803 -10.40921 -9.99920 -9.74082 -9.48428 -8.99868 -8.34373 -6.36642 0.25328 0.35050 1.29061 1.36432 1.45507 1.59016 1.98307 2.31877 2.73565 2.90241 3.17582 3.36251 3.41829 3.78032 3.79778 3.93514 3.98856 4.10103 4.25772 4.27632 4.37217 4.39309 4.44374 4.50899 4.58033 4.67077 4.73701 4.79419 4.88090 4.90981 4.96383 5.01094 5.04088 5.05286 5.22548 5.29176 5.31866 5.45377 5.51387 5.55816 5.62596 5.66669 5.96042 5.98201 6.05141 6.27803 6.40689 6.69394 6.97651 7.31429 7.43923 8.79674 Molecular weight = 315.17amu Principal moments of inertia in cm(-1) A = 0.022356 B = 0.002868 C = 0.002718 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1252.140531 B = 9759.891276 C =10299.520319 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.936 5.936 2 C 0.038 3.962 3 Si 0.913 3.087 4 H -0.292 1.292 5 H -0.296 1.296 6 H -0.225 1.225 7 C -0.476 4.476 8 H 0.048 0.952 9 C -0.043 4.043 10 C 0.179 3.821 11 N -0.710 5.710 12 C 0.699 3.301 13 O -0.623 6.623 14 N -0.682 5.682 15 C 0.153 3.847 16 C -0.136 4.136 17 C -0.103 4.103 18 C -0.104 4.104 19 C -0.101 4.101 20 C -0.143 4.143 21 C 0.099 3.901 22 N -0.682 5.682 23 C 0.056 3.944 24 C -0.111 4.111 25 C -0.154 4.154 26 C -0.182 4.182 27 H 0.264 0.736 28 H 0.028 0.972 29 H 0.062 0.938 30 H 0.411 0.589 31 H 0.420 0.580 32 H 0.107 0.893 33 H 0.139 0.861 34 H 0.140 0.860 35 H 0.095 0.905 36 H 0.092 0.908 37 H 0.346 0.654 38 H 0.075 0.925 39 H 0.099 0.901 40 H 0.082 0.918 41 H 0.092 0.908 42 H 0.087 0.913 43 H 0.098 0.902 44 H 0.092 0.908 45 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.833 -5.752 -20.102 23.106 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.575 5.575 2 C -0.161 4.161 3 Si 0.740 3.260 4 H -0.219 1.219 5 H -0.223 1.223 6 H -0.148 1.148 7 C -0.513 4.513 8 H 0.066 0.934 9 C -0.044 4.044 10 C 0.054 3.946 11 N -0.364 5.364 12 C 0.399 3.601 13 O -0.504 6.504 14 N -0.331 5.331 15 C 0.058 3.942 16 C -0.157 4.157 17 C -0.122 4.122 18 C -0.105 4.105 19 C -0.104 4.104 20 C -0.164 4.164 21 C -0.031 4.031 22 N -0.310 5.310 23 C -0.073 4.073 24 C -0.149 4.149 25 C -0.191 4.191 26 C -0.220 4.220 27 H 0.074 0.926 28 H 0.047 0.953 29 H 0.080 0.920 30 H 0.247 0.753 31 H 0.258 0.742 32 H 0.125 0.875 33 H 0.157 0.843 34 H 0.158 0.842 35 H 0.113 0.887 36 H 0.110 0.890 37 H 0.164 0.836 38 H 0.093 0.907 39 H 0.117 0.883 40 H 0.100 0.900 41 H 0.111 0.889 42 H 0.105 0.895 43 H 0.117 0.883 44 H 0.110 0.890 45 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges 10.014 -5.245 -20.652 23.544 hybrid contribution -0.184 0.753 1.685 1.855 sum 9.830 -4.492 -18.967 21.830 Atomic orbital electron populations 1.70005 1.07849 1.27822 1.51809 1.25511 0.94883 1.01827 0.93915 0.86290 0.81579 0.80460 0.77631 1.21888 1.22285 1.14762 1.20356 0.89157 0.93113 1.48702 0.93361 1.19446 0.92647 1.02299 0.90008 1.20773 0.96446 0.92468 0.84917 1.44932 1.50124 1.37604 1.03701 1.16106 0.81646 0.81049 0.81256 1.90873 1.36905 1.38000 1.84633 1.42494 1.34259 1.51205 1.05182 1.17630 0.92720 1.00389 0.83454 1.21019 0.93938 1.02718 0.97983 1.21140 1.00610 0.99430 0.91003 1.19846 0.92689 1.01594 0.96331 1.20525 0.94799 0.99597 0.95462 1.21051 1.00145 1.03974 0.91209 1.20985 0.94562 1.02461 0.85057 1.61043 1.25964 1.07570 1.36381 1.22148 0.88374 0.98689 0.98120 1.21194 0.99744 1.03404 0.90557 1.22844 1.01526 0.91065 1.03680 1.23099 1.01172 0.99924 0.97826 0.92640 0.95344 0.91996 0.75261 0.74190 0.87530 0.84282 0.84196 0.88702 0.88996 0.83586 0.90684 0.88303 0.89980 0.88915 0.89478 0.88328 0.88962 0.89801 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -55.52 13.96 21.45 0.30 -55.22 16 2 C 0.04 2.08 5.46 84.65 0.46 2.54 16 3 Si 0.91 43.92 24.90 68.60 1.71 45.63 16 4 H -0.29 -14.61 6.95 99.48 0.69 -13.92 16 5 H -0.30 -14.28 7.11 99.48 0.71 -13.57 16 6 H -0.23 -9.79 5.90 99.48 0.59 -9.20 16 7 C -0.48 -24.52 9.00 25.60 0.23 -24.29 16 8 H 0.05 2.73 8.06 -2.91 -0.02 2.71 16 9 C -0.04 -1.80 0.90 -52.93 -0.05 -1.85 16 10 C 0.18 7.44 5.14 86.38 0.44 7.88 16 11 N -0.71 -26.98 5.46 -478.54 -2.61 -29.59 16 12 C 0.70 26.64 8.17 179.05 1.46 28.10 16 13 O -0.62 -28.11 14.82 -4.00 -0.06 -28.16 16 14 N -0.68 -20.57 5.33 -317.33 -1.69 -22.26 16 15 C 0.15 4.43 6.08 38.10 0.23 4.67 16 16 C -0.14 -4.02 8.68 22.35 0.19 -3.82 16 17 C -0.10 -2.43 9.64 22.31 0.22 -2.22 16 18 C -0.10 -2.10 5.78 -19.81 -0.11 -2.21 16 19 C -0.10 -2.09 5.79 -19.87 -0.12 -2.20 16 20 C -0.14 -3.41 9.57 22.45 0.21 -3.19 16 21 C 0.10 1.55 6.33 85.59 0.54 2.10 16 22 N -0.68 -9.65 6.96 -518.28 -3.61 -13.25 16 23 C 0.06 0.66 6.62 86.22 0.57 1.23 16 24 C -0.11 -1.47 5.82 29.82 0.17 -1.30 16 25 C -0.15 -5.39 9.95 30.62 0.30 -5.09 16 26 C -0.18 -6.81 8.32 30.62 0.25 -6.56 16 27 H 0.26 15.01 8.31 -92.71 -0.77 14.24 16 28 H 0.03 1.34 4.72 -2.38 -0.01 1.32 16 29 H 0.06 2.43 8.08 -2.39 -0.02 2.41 16 30 H 0.41 14.51 8.27 -92.71 -0.77 13.74 16 31 H 0.42 10.19 8.87 -92.72 -0.82 9.36 16 32 H 0.11 3.52 7.16 -2.91 -0.02 3.50 16 33 H 0.14 2.65 8.06 -2.91 -0.02 2.63 16 34 H 0.14 2.83 8.06 -2.91 -0.02 2.81 16 35 H 0.09 1.36 8.14 -2.39 -0.02 1.34 16 36 H 0.09 1.35 8.13 -2.38 -0.02 1.33 16 37 H 0.35 4.63 8.74 -89.69 -0.78 3.85 16 38 H 0.07 0.91 8.05 -2.39 -0.02 0.89 16 39 H 0.10 0.84 8.14 -2.39 -0.02 0.82 16 40 H 0.08 1.02 8.14 -2.39 -0.02 1.00 16 41 H 0.09 1.00 8.14 -2.39 -0.02 0.99 16 42 H 0.09 3.04 8.14 -2.39 -0.02 3.02 16 43 H 0.10 2.99 8.14 -2.39 -0.02 2.97 16 44 H 0.09 3.09 8.14 -2.39 -0.02 3.07 16 45 H 0.08 3.24 8.14 -2.39 -0.02 3.23 16 Total: -1.00 -68.12 362.27 -2.41 -70.54 By element: Atomic # 1 Polarization: 40.02 SS G_CDS: -1.47 Total: 38.55 kcal Atomic # 6 Polarization: -11.24 SS G_CDS: 5.02 Total: -6.22 kcal Atomic # 7 Polarization: -112.72 SS G_CDS: -7.61 Total: -120.33 kcal Atomic # 8 Polarization: -28.11 SS G_CDS: -0.06 Total: -28.16 kcal Atomic # 14 Polarization: 43.92 SS G_CDS: 1.71 Total: 45.63 kcal Total: -68.12 -2.41 -70.54 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000415893853.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.237 kcal (2) G-P(sol) polarization free energy of solvation -68.125 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.113 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.412 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.537 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.300 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.49 seconds