Wall clock time and date at job start Tue Mar 31 2020 12:08:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86800 * 120.00255 * 2 1 4 4 H 1.48500 * 109.47110 * 270.00140 * 3 2 1 5 5 H 1.48498 * 109.46911 * 30.00193 * 3 2 1 6 6 H 1.48497 * 109.46947 * 150.00120 * 3 2 1 7 7 C 1.37883 * 119.99924 * 180.02562 * 2 1 3 8 8 H 1.07992 * 119.99947 * 179.97438 * 7 2 1 9 9 C 1.50703 * 119.99767 * 0.02562 * 7 2 1 10 10 C 1.52996 * 109.47053 * 179.97438 * 9 7 2 11 11 C 1.52995 * 109.47143 * 179.97438 * 10 9 7 12 12 S 1.81405 * 109.47065 * 180.02562 * 11 10 9 13 13 O 1.42097 * 110.54500 * 68.37765 * 12 11 10 14 14 O 1.42096 * 110.54030 * 291.62382 * 12 11 10 15 15 N 1.65610 * 104.44918 * 180.02562 * 12 11 10 16 16 C 1.47426 * 125.64376 * 89.97112 * 15 12 11 17 17 C 1.54917 * 104.82709 * 155.90628 * 16 15 12 18 18 C 1.55161 * 101.57995 * 37.01275 * 17 16 15 19 19 H 1.09001 * 110.72393 * 83.03686 * 18 17 16 20 20 C 1.53001 * 110.72045 * 206.13236 * 18 17 16 21 21 C 1.54887 * 110.48548 * 183.76826 * 20 18 17 22 22 C 1.54893 * 102.74533 * 156.62347 * 21 20 18 23 23 C 1.54266 * 104.19500 * 322.05712 * 22 21 20 24 24 C 1.53872 * 106.60044 * 23.61099 * 23 22 21 25 25 C 1.47018 * 125.64844 * 270.01623 * 15 12 11 26 26 H 0.97001 * 119.99380 * 0.02562 * 1 2 3 27 27 H 1.08996 * 109.47112 * 59.99899 * 9 7 2 28 28 H 1.09001 * 109.47151 * 299.99797 * 9 7 2 29 29 H 1.09002 * 109.46790 * 59.99766 * 10 9 7 30 30 H 1.09001 * 109.47145 * 300.00007 * 10 9 7 31 31 H 1.09002 * 109.47315 * 60.00276 * 11 10 9 32 32 H 1.09001 * 109.47259 * 300.00125 * 11 10 9 33 33 H 1.08999 * 110.36788 * 37.07452 * 16 15 12 34 34 H 1.08999 * 110.36774 * 274.74267 * 16 15 12 35 35 H 1.08998 * 111.00841 * 278.93826 * 17 16 15 36 36 H 1.09006 * 110.99997 * 155.08069 * 17 16 15 37 37 H 1.09001 * 110.53587 * 61.15632 * 20 18 17 38 38 H 1.09001 * 110.75744 * 274.93249 * 21 20 18 39 39 H 1.09000 * 110.75698 * 38.31067 * 21 20 18 40 40 H 1.09002 * 110.48578 * 203.38190 * 22 21 20 41 41 H 1.08998 * 110.60430 * 80.79077 * 22 21 20 42 42 H 1.09002 * 110.02957 * 264.32709 * 23 22 21 43 43 H 1.08996 * 110.03427 * 142.89930 * 23 22 21 44 44 H 1.09003 * 110.03622 * 240.71485 * 24 23 22 45 45 H 1.09005 * 110.03465 * 119.28158 * 24 23 22 46 46 H 1.09003 * 109.88347 * 61.60703 * 25 15 12 47 47 H 1.09004 * 109.88138 * 300.44192 * 25 15 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4467 2.6526 0.7001 6 1 3.5468 1.4400 0.7000 7 6 2.0046 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2510 -2.4992 -0.0017 10 6 2.2451 -3.6621 -0.0027 11 6 1.4801 -4.9871 -0.0033 12 16 2.6589 -6.3659 -0.0037 13 8 3.3556 -6.4268 1.2332 14 8 3.3557 -6.4258 -1.2407 15 7 1.7084 -7.7221 -0.0050 16 6 1.2154 -8.4245 -1.2038 17 6 0.9458 -9.8748 -0.7306 18 6 0.3974 -9.6384 0.7014 19 1 -0.6666 -9.4033 0.6731 20 6 0.6568 -10.8577 1.5886 21 6 0.0247 -10.6543 2.9879 22 6 -0.1617 -12.1066 3.4931 23 6 -0.5850 -12.8932 2.2353 24 6 -0.0645 -12.0992 1.0244 25 6 1.2160 -8.4244 1.1890 26 1 -0.4849 0.8401 -0.0004 27 1 0.6247 -2.5563 -0.8919 28 1 0.6240 -2.5575 0.8880 29 1 2.8718 -3.6051 0.8873 30 1 2.8718 -3.6036 -0.8927 31 1 0.8532 -5.0443 -0.8931 32 1 0.8537 -5.0453 0.8869 33 1 1.9732 -8.4158 -1.9872 34 1 0.2939 -7.9646 -1.5608 35 1 1.8681 -10.4552 -0.7049 36 1 0.1989 -10.3586 -1.3601 37 1 1.7269 -11.0456 1.6769 38 1 0.7009 -10.1021 3.6406 39 1 -0.9366 -10.1468 2.9075 40 1 -0.9440 -12.1494 4.2510 41 1 0.7748 -12.4977 3.8904 42 1 -1.6713 -12.9712 2.1918 43 1 -0.1391 -13.8877 2.2493 44 1 -0.8983 -11.7918 0.3931 45 1 0.6340 -12.7083 0.4507 46 1 0.5805 -7.7598 1.7743 47 1 2.0575 -8.7632 1.7933 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000420729834.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:08:18 Heat of formation + Delta-G solvation = -107.919583 kcal Electronic energy + Delta-G solvation = -24565.668504 eV Core-core repulsion = 21066.824470 eV Total energy + Delta-G solvation = -3498.844035 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 315.166 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -39.66731 -37.33328 -36.89036 -35.72801 -34.65888 -32.17990 -31.96762 -29.89905 -28.79137 -27.79769 -27.06971 -23.74262 -22.67370 -21.64514 -20.70585 -20.45739 -19.94447 -18.76171 -17.57854 -16.79069 -16.44031 -15.95090 -15.74845 -15.56188 -14.84832 -14.49458 -14.34879 -14.14322 -13.75428 -13.67653 -13.18411 -12.78671 -12.62004 -12.56477 -12.26650 -12.22420 -11.94642 -11.86035 -11.76374 -11.58185 -11.51107 -11.32660 -11.21236 -11.10611 -10.92127 -10.87074 -10.84747 -10.79667 -10.67720 -10.60043 -10.41628 -9.94890 -9.49418 -9.21565 -8.87733 -8.40789 -6.05729 -4.08744 0.43425 2.78510 3.30539 3.36521 3.40786 3.99069 4.02232 4.20657 4.32589 4.34812 4.42076 4.44259 4.67660 4.76449 5.06642 5.11409 5.14116 5.16099 5.20944 5.24780 5.27389 5.30748 5.34536 5.35951 5.43331 5.45002 5.55075 5.61708 5.66464 5.70106 5.76774 5.80596 5.89063 5.92113 5.95016 6.03556 6.08379 6.14151 6.24550 6.38242 6.45527 6.87509 7.56995 7.66917 7.92373 8.32863 8.97494 9.55889 11.05524 Molecular weight = 315.17amu Principal moments of inertia in cm(-1) A = 0.024786 B = 0.002503 C = 0.002411 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1129.400431 B =11184.317897 C =11610.441503 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.896 5.896 2 C 0.057 3.943 3 Si 0.895 3.105 4 H -0.280 1.280 5 H -0.286 1.286 6 H -0.273 1.273 7 C -0.526 4.526 8 H 0.058 0.942 9 C 0.031 3.969 10 C -0.106 4.106 11 C -0.608 4.608 12 S 2.614 3.386 13 O -0.958 6.958 14 O -0.959 6.959 15 N -1.018 6.018 16 C 0.113 3.887 17 C -0.123 4.123 18 C -0.089 4.089 19 H 0.086 0.914 20 C -0.084 4.084 21 C -0.124 4.124 22 C -0.126 4.126 23 C -0.126 4.126 24 C -0.118 4.118 25 C 0.124 3.876 26 H 0.261 0.739 27 H 0.020 0.980 28 H 0.020 0.980 29 H 0.065 0.935 30 H 0.065 0.935 31 H 0.127 0.873 32 H 0.126 0.874 33 H 0.083 0.917 34 H 0.066 0.934 35 H 0.076 0.924 36 H 0.081 0.919 37 H 0.078 0.922 38 H 0.069 0.931 39 H 0.069 0.931 40 H 0.063 0.937 41 H 0.064 0.936 42 H 0.061 0.939 43 H 0.060 0.940 44 H 0.065 0.935 45 H 0.062 0.938 46 H 0.065 0.935 47 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.121 -26.770 2.315 27.051 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.535 5.535 2 C -0.144 4.144 3 Si 0.722 3.278 4 H -0.206 1.206 5 H -0.212 1.212 6 H -0.197 1.197 7 C -0.564 4.564 8 H 0.076 0.924 9 C -0.008 4.008 10 C -0.145 4.145 11 C -0.740 4.740 12 S 2.712 3.288 13 O -0.949 6.949 14 O -0.949 6.949 15 N -0.855 5.855 16 C -0.012 4.012 17 C -0.162 4.162 18 C -0.109 4.109 19 H 0.104 0.896 20 C -0.103 4.103 21 C -0.161 4.161 22 C -0.163 4.163 23 C -0.163 4.163 24 C -0.156 4.156 25 C -0.001 4.001 26 H 0.071 0.929 27 H 0.039 0.961 28 H 0.039 0.961 29 H 0.084 0.916 30 H 0.084 0.916 31 H 0.145 0.855 32 H 0.145 0.855 33 H 0.102 0.898 34 H 0.085 0.915 35 H 0.094 0.906 36 H 0.099 0.901 37 H 0.096 0.904 38 H 0.087 0.913 39 H 0.088 0.912 40 H 0.082 0.918 41 H 0.083 0.917 42 H 0.080 0.920 43 H 0.079 0.921 44 H 0.084 0.916 45 H 0.081 0.919 46 H 0.083 0.917 47 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -2.259 -26.606 2.318 26.802 hybrid contribution -0.397 1.219 -0.001 1.282 sum -2.655 -25.387 2.317 25.630 Atomic orbital electron populations 1.69962 1.06096 1.26769 1.50633 1.25029 0.94899 0.99390 0.95109 0.86545 0.79875 0.83140 0.78193 1.20560 1.21167 1.19737 1.21257 0.93261 0.90883 1.51015 0.92357 1.19062 0.93529 0.90450 0.97716 1.21503 0.99401 0.91714 1.01925 1.30592 1.16462 1.15846 1.11117 1.04995 0.75337 0.74389 0.74075 1.93556 1.70141 1.85797 1.45378 1.93552 1.70129 1.85827 1.45425 1.58784 1.70381 1.43556 1.12765 1.22038 0.99466 0.92034 0.87645 1.22824 1.01642 0.95965 0.95758 1.22321 0.99968 0.93832 0.94806 0.89557 1.22040 1.00228 0.93584 0.94400 1.22612 1.01011 0.96644 0.95863 1.22352 1.01197 0.95489 0.97305 1.22139 1.00668 0.98792 0.94741 1.22177 0.99890 0.95963 0.97552 1.21756 0.97894 0.93496 0.87002 0.92901 0.96143 0.96122 0.91603 0.91594 0.85504 0.85544 0.89833 0.91544 0.90559 0.90073 0.90367 0.91265 0.91178 0.91829 0.91738 0.92004 0.92128 0.91598 0.91905 0.91664 0.90972 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.76 13.29 55.43 0.74 -26.02 16 2 C 0.06 1.64 5.46 -17.82 -0.10 1.54 16 3 Si 0.89 21.73 29.54 -169.99 -5.02 16.71 16 4 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 5 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 6 H -0.27 -6.50 7.11 56.52 0.40 -6.10 16 7 C -0.53 -14.96 9.11 -34.44 -0.31 -15.28 16 8 H 0.06 1.61 7.74 -52.49 -0.41 1.20 16 9 C 0.03 0.79 4.97 -27.88 -0.14 0.65 16 10 C -0.11 -2.20 5.16 -26.74 -0.14 -2.34 16 11 C -0.61 -9.73 6.18 37.16 0.23 -9.50 16 12 S 2.61 40.61 5.65 -107.50 -0.61 40.01 16 13 O -0.96 -17.47 17.60 -57.54 -1.01 -18.48 16 14 O -0.96 -17.39 17.28 -57.54 -0.99 -18.38 16 15 N -1.02 -12.19 3.62 -111.42 -0.40 -12.59 16 16 C 0.11 1.10 7.07 -2.52 -0.02 1.09 16 17 C -0.12 -0.91 5.99 -24.58 -0.15 -1.06 16 18 C -0.09 -0.68 2.30 -88.78 -0.20 -0.88 16 19 H 0.09 0.60 8.12 -51.93 -0.42 0.18 16 20 C -0.08 -0.57 2.25 -88.96 -0.20 -0.77 16 21 C -0.12 -0.83 6.05 -24.74 -0.15 -0.98 16 22 C -0.13 -0.78 6.83 -25.07 -0.17 -0.95 16 23 C -0.13 -0.73 6.80 -25.61 -0.17 -0.91 16 24 C -0.12 -0.70 5.83 -25.61 -0.15 -0.85 16 25 C 0.12 1.25 6.21 -3.07 -0.02 1.23 16 26 H 0.26 7.35 8.31 -40.82 -0.34 7.01 16 27 H 0.02 0.54 8.14 -51.93 -0.42 0.12 16 28 H 0.02 0.55 8.14 -51.93 -0.42 0.12 16 29 H 0.07 1.34 8.14 -51.93 -0.42 0.91 16 30 H 0.07 1.34 8.14 -51.93 -0.42 0.91 16 31 H 0.13 1.83 8.14 -51.92 -0.42 1.40 16 32 H 0.13 1.83 8.14 -51.92 -0.42 1.40 16 33 H 0.08 0.86 7.67 -51.93 -0.40 0.46 16 34 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 35 H 0.08 0.58 8.05 -51.93 -0.42 0.16 16 36 H 0.08 0.46 8.14 -51.93 -0.42 0.04 16 37 H 0.08 0.58 8.07 -51.93 -0.42 0.16 16 38 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 39 H 0.07 0.46 8.04 -51.93 -0.42 0.05 16 40 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 41 H 0.06 0.40 8.14 -51.93 -0.42 -0.03 16 42 H 0.06 0.35 8.14 -51.93 -0.42 -0.08 16 43 H 0.06 0.33 8.14 -51.93 -0.42 -0.09 16 44 H 0.07 0.38 7.84 -51.93 -0.41 -0.03 16 45 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 46 H 0.07 0.61 8.14 -51.93 -0.42 0.18 16 47 H 0.07 0.77 7.77 -51.93 -0.40 0.36 16 LS Contribution 382.24 15.07 5.76 5.76 Total: -1.00 -34.29 382.24 -12.00 -46.29 By element: Atomic # 1 Polarization: 4.48 SS G_CDS: -8.77 Total: -4.29 kcal Atomic # 6 Polarization: -27.31 SS G_CDS: -1.69 Total: -29.00 kcal Atomic # 7 Polarization: -38.95 SS G_CDS: 0.33 Total: -38.61 kcal Atomic # 8 Polarization: -34.86 SS G_CDS: -2.01 Total: -36.86 kcal Atomic # 14 Polarization: 21.73 SS G_CDS: -5.02 Total: 16.71 kcal Atomic # 16 Polarization: 40.61 SS G_CDS: -0.61 Total: 40.01 kcal Total LS contribution 5.76 Total: 5.76 kcal Total: -34.29 -12.00 -46.29 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000420729834.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -61.630 kcal (2) G-P(sol) polarization free energy of solvation -34.289 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.919 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.001 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.290 kcal (6) G-S(sol) free energy of system = (1) + (5) -107.920 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds