Wall clock time and date at job start Tue Mar 31 2020 12:08:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86800 * 120.00255 * 2 1 4 4 H 1.48500 * 109.47110 * 270.00140 * 3 2 1 5 5 H 1.48498 * 109.46911 * 30.00193 * 3 2 1 6 6 H 1.48497 * 109.46947 * 150.00120 * 3 2 1 7 7 C 1.37883 * 119.99924 * 180.02562 * 2 1 3 8 8 H 1.07992 * 119.99947 * 179.97438 * 7 2 1 9 9 C 1.50703 * 119.99767 * 0.02562 * 7 2 1 10 10 C 1.52996 * 109.47053 * 179.97438 * 9 7 2 11 11 C 1.52995 * 109.47143 * 179.97438 * 10 9 7 12 12 S 1.81405 * 109.47065 * 180.02562 * 11 10 9 13 13 O 1.42097 * 110.54500 * 68.37765 * 12 11 10 14 14 O 1.42096 * 110.54030 * 291.62382 * 12 11 10 15 15 N 1.65610 * 104.44918 * 180.02562 * 12 11 10 16 16 C 1.47426 * 125.64376 * 89.97112 * 15 12 11 17 17 C 1.54917 * 104.82709 * 155.90628 * 16 15 12 18 18 C 1.55161 * 101.57995 * 37.01275 * 17 16 15 19 19 H 1.09001 * 110.72393 * 83.03686 * 18 17 16 20 20 C 1.53001 * 110.72045 * 206.13236 * 18 17 16 21 21 C 1.54887 * 110.48548 * 183.76826 * 20 18 17 22 22 C 1.54893 * 102.74533 * 156.62347 * 21 20 18 23 23 C 1.54266 * 104.19500 * 322.05712 * 22 21 20 24 24 C 1.53872 * 106.60044 * 23.61099 * 23 22 21 25 25 C 1.47018 * 125.64844 * 270.01623 * 15 12 11 26 26 H 0.97001 * 119.99380 * 0.02562 * 1 2 3 27 27 H 1.08996 * 109.47112 * 59.99899 * 9 7 2 28 28 H 1.09001 * 109.47151 * 299.99797 * 9 7 2 29 29 H 1.09002 * 109.46790 * 59.99766 * 10 9 7 30 30 H 1.09001 * 109.47145 * 300.00007 * 10 9 7 31 31 H 1.09002 * 109.47315 * 60.00276 * 11 10 9 32 32 H 1.09001 * 109.47259 * 300.00125 * 11 10 9 33 33 H 1.08999 * 110.36788 * 37.07452 * 16 15 12 34 34 H 1.08999 * 110.36774 * 274.74267 * 16 15 12 35 35 H 1.08998 * 111.00841 * 278.93826 * 17 16 15 36 36 H 1.09006 * 110.99997 * 155.08069 * 17 16 15 37 37 H 1.09001 * 110.53587 * 61.15632 * 20 18 17 38 38 H 1.09001 * 110.75744 * 274.93249 * 21 20 18 39 39 H 1.09000 * 110.75698 * 38.31067 * 21 20 18 40 40 H 1.09002 * 110.48578 * 203.38190 * 22 21 20 41 41 H 1.08998 * 110.60430 * 80.79077 * 22 21 20 42 42 H 1.09002 * 110.02957 * 264.32709 * 23 22 21 43 43 H 1.08996 * 110.03427 * 142.89930 * 23 22 21 44 44 H 1.09003 * 110.03622 * 240.71485 * 24 23 22 45 45 H 1.09005 * 110.03465 * 119.28158 * 24 23 22 46 46 H 1.09003 * 109.88347 * 61.60703 * 25 15 12 47 47 H 1.09004 * 109.88138 * 300.44192 * 25 15 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4467 2.6526 0.7001 6 1 3.5468 1.4400 0.7000 7 6 2.0046 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2510 -2.4992 -0.0017 10 6 2.2451 -3.6621 -0.0027 11 6 1.4801 -4.9871 -0.0033 12 16 2.6589 -6.3659 -0.0037 13 8 3.3556 -6.4268 1.2332 14 8 3.3557 -6.4258 -1.2407 15 7 1.7084 -7.7221 -0.0050 16 6 1.2154 -8.4245 -1.2038 17 6 0.9458 -9.8748 -0.7306 18 6 0.3974 -9.6384 0.7014 19 1 -0.6666 -9.4033 0.6731 20 6 0.6568 -10.8577 1.5886 21 6 0.0247 -10.6543 2.9879 22 6 -0.1617 -12.1066 3.4931 23 6 -0.5850 -12.8932 2.2353 24 6 -0.0645 -12.0992 1.0244 25 6 1.2160 -8.4244 1.1890 26 1 -0.4849 0.8401 -0.0004 27 1 0.6247 -2.5563 -0.8919 28 1 0.6240 -2.5575 0.8880 29 1 2.8718 -3.6051 0.8873 30 1 2.8718 -3.6036 -0.8927 31 1 0.8532 -5.0443 -0.8931 32 1 0.8537 -5.0453 0.8869 33 1 1.9732 -8.4158 -1.9872 34 1 0.2939 -7.9646 -1.5608 35 1 1.8681 -10.4552 -0.7049 36 1 0.1989 -10.3586 -1.3601 37 1 1.7269 -11.0456 1.6769 38 1 0.7009 -10.1021 3.6406 39 1 -0.9366 -10.1468 2.9075 40 1 -0.9440 -12.1494 4.2510 41 1 0.7748 -12.4977 3.8904 42 1 -1.6713 -12.9712 2.1918 43 1 -0.1391 -13.8877 2.2493 44 1 -0.8983 -11.7918 0.3931 45 1 0.6340 -12.7083 0.4507 46 1 0.5805 -7.7598 1.7743 47 1 2.0575 -8.7632 1.7933 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000420729834.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:08:17 Heat of formation + Delta-G solvation = -128.928282 kcal Electronic energy + Delta-G solvation = -24566.579510 eV Core-core repulsion = 21066.824470 eV Total energy + Delta-G solvation = -3499.755040 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 315.166 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -40.30387 -38.25900 -37.97106 -37.09884 -36.49630 -34.18749 -32.68022 -30.56609 -29.68268 -29.30488 -27.72209 -25.64423 -23.54442 -22.33656 -22.23014 -21.14286 -20.49433 -19.89569 -18.76424 -18.55487 -17.55836 -17.19998 -16.69427 -16.53712 -16.35491 -15.87246 -15.49301 -14.89729 -14.64237 -14.51066 -14.18713 -14.10468 -13.91301 -13.56313 -13.50678 -13.30838 -13.26317 -13.18161 -13.02040 -12.87396 -12.77152 -12.65411 -12.41480 -12.17155 -12.00356 -11.82073 -11.79021 -11.69168 -11.42032 -11.38964 -11.38360 -11.20504 -11.12116 -11.11390 -10.59468 -9.91512 -8.24526 -6.35788 -0.82885 1.39085 1.40039 1.51496 1.66571 2.38502 2.76610 3.02282 3.08886 3.49295 3.61283 3.72908 3.78118 3.85893 3.89640 4.07964 4.24536 4.35020 4.39381 4.51958 4.59469 4.60484 4.67657 4.68570 4.75680 4.79364 4.84912 4.90336 4.92006 5.01014 5.01792 5.03255 5.10585 5.15199 5.17532 5.19985 5.31299 5.41438 5.42503 5.43299 5.48166 5.58237 5.59497 5.66701 5.76878 6.17283 6.79507 7.33552 8.87053 Molecular weight = 315.17amu Principal moments of inertia in cm(-1) A = 0.024786 B = 0.002503 C = 0.002411 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1129.400431 B =11184.317897 C =11610.441503 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.930 5.930 2 C 0.002 3.998 3 Si 0.965 3.035 4 H -0.271 1.271 5 H -0.279 1.279 6 H -0.265 1.265 7 C -0.553 4.553 8 H 0.060 0.940 9 C 0.032 3.968 10 C -0.106 4.106 11 C -0.607 4.607 12 S 2.640 3.360 13 O -0.987 6.987 14 O -0.986 6.986 15 N -1.014 6.014 16 C 0.101 3.899 17 C -0.116 4.116 18 C -0.080 4.080 19 H 0.100 0.900 20 C -0.082 4.082 21 C -0.126 4.126 22 C -0.127 4.127 23 C -0.126 4.126 24 C -0.115 4.115 25 C 0.112 3.888 26 H 0.265 0.735 27 H 0.003 0.997 28 H 0.003 0.997 29 H 0.065 0.935 30 H 0.066 0.934 31 H 0.144 0.856 32 H 0.142 0.858 33 H 0.075 0.925 34 H 0.085 0.915 35 H 0.073 0.927 36 H 0.107 0.893 37 H 0.069 0.931 38 H 0.061 0.939 39 H 0.073 0.927 40 H 0.066 0.934 41 H 0.061 0.939 42 H 0.065 0.935 43 H 0.063 0.937 44 H 0.073 0.927 45 H 0.066 0.934 46 H 0.073 0.927 47 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.640 -27.830 2.034 28.140 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.570 5.570 2 C -0.196 4.196 3 Si 0.789 3.211 4 H -0.196 1.196 5 H -0.204 1.204 6 H -0.189 1.189 7 C -0.591 4.591 8 H 0.078 0.922 9 C -0.007 4.007 10 C -0.146 4.146 11 C -0.738 4.738 12 S 2.737 3.263 13 O -0.978 6.978 14 O -0.976 6.976 15 N -0.854 5.854 16 C -0.023 4.023 17 C -0.155 4.155 18 C -0.100 4.100 19 H 0.118 0.882 20 C -0.100 4.100 21 C -0.164 4.164 22 C -0.165 4.165 23 C -0.163 4.163 24 C -0.153 4.153 25 C -0.013 4.013 26 H 0.074 0.926 27 H 0.021 0.979 28 H 0.021 0.979 29 H 0.084 0.916 30 H 0.085 0.915 31 H 0.162 0.838 32 H 0.160 0.840 33 H 0.093 0.907 34 H 0.103 0.897 35 H 0.092 0.908 36 H 0.125 0.875 37 H 0.088 0.912 38 H 0.080 0.920 39 H 0.091 0.909 40 H 0.085 0.915 41 H 0.080 0.920 42 H 0.084 0.916 43 H 0.082 0.918 44 H 0.092 0.908 45 H 0.084 0.916 46 H 0.091 0.909 47 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -2.769 -27.663 2.036 27.876 hybrid contribution -0.279 1.477 0.101 1.507 sum -3.047 -26.186 2.137 26.449 Atomic orbital electron populations 1.70074 1.07644 1.27945 1.51296 1.25958 0.95851 1.03300 0.94520 0.85453 0.78668 0.78388 0.78611 1.19638 1.20442 1.18936 1.21732 0.93731 0.92484 1.51172 0.92176 1.18956 0.93981 0.91818 0.95905 1.21321 0.98719 0.92511 1.02019 1.30543 1.16685 1.13726 1.12858 1.03939 0.75024 0.74570 0.72726 1.93513 1.71327 1.86408 1.46542 1.93512 1.71239 1.86417 1.46469 1.58470 1.70155 1.42199 1.14556 1.22358 0.99923 0.93461 0.86591 1.22841 1.02351 0.94423 0.95860 1.22309 1.00151 0.92760 0.94813 0.88185 1.22002 0.99895 0.93770 0.94381 1.22628 1.00960 0.96981 0.95785 1.22362 1.01228 0.95181 0.97690 1.22148 1.00961 0.98845 0.94395 1.22159 1.00072 0.95391 0.97639 1.22023 0.98159 0.94677 0.86395 0.92581 0.97866 0.97894 0.91642 0.91538 0.83794 0.83966 0.90655 0.89699 0.90799 0.87494 0.91235 0.92019 0.90856 0.91527 0.92012 0.91584 0.91842 0.90815 0.91569 0.90851 0.91887 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.10 13.29 21.45 0.28 -55.82 16 2 C 0.00 0.11 5.46 84.66 0.46 0.57 16 3 Si 0.96 44.51 29.54 68.60 2.03 46.53 16 4 H -0.27 -12.07 7.11 99.48 0.71 -11.36 16 5 H -0.28 -12.48 7.11 99.48 0.71 -11.78 16 6 H -0.27 -11.80 7.11 99.48 0.71 -11.10 16 7 C -0.55 -31.87 9.11 25.60 0.23 -31.64 16 8 H 0.06 3.34 7.74 -2.91 -0.02 3.32 16 9 C 0.03 1.66 4.97 29.85 0.15 1.81 16 10 C -0.11 -4.46 5.16 30.59 0.16 -4.30 16 11 C -0.61 -19.08 6.18 71.98 0.44 -18.64 16 12 S 2.64 80.92 5.65 -56.49 -0.32 80.60 16 13 O -0.99 -36.01 17.60 -127.65 -2.25 -38.25 16 14 O -0.99 -35.53 17.28 -127.65 -2.21 -37.74 16 15 N -1.01 -23.04 3.62 -506.41 -1.83 -24.87 16 16 C 0.10 1.77 7.07 86.86 0.61 2.38 16 17 C -0.12 -1.42 5.99 31.99 0.19 -1.23 16 18 C -0.08 -1.03 2.30 -9.60 -0.02 -1.05 16 19 H 0.10 1.06 8.12 -2.39 -0.02 1.04 16 20 C -0.08 -0.97 2.25 -9.72 -0.02 -0.99 16 21 C -0.13 -1.53 6.05 31.89 0.19 -1.33 16 22 C -0.13 -1.40 6.83 31.67 0.22 -1.18 16 23 C -0.13 -1.22 6.80 31.32 0.21 -1.01 16 24 C -0.12 -1.09 5.83 31.32 0.18 -0.91 16 25 C 0.11 2.12 6.21 86.73 0.54 2.66 16 26 H 0.27 14.98 8.31 -92.71 -0.77 14.21 16 27 H 0.00 0.16 8.14 -2.39 -0.02 0.14 16 28 H 0.00 0.15 8.14 -2.39 -0.02 0.13 16 29 H 0.06 2.69 8.14 -2.39 -0.02 2.67 16 30 H 0.07 2.73 8.14 -2.39 -0.02 2.71 16 31 H 0.14 4.00 8.14 -2.39 -0.02 3.98 16 32 H 0.14 3.99 8.14 -2.39 -0.02 3.97 16 33 H 0.07 1.46 7.67 -2.39 -0.02 1.44 16 34 H 0.08 1.19 8.14 -2.39 -0.02 1.17 16 35 H 0.07 0.96 8.05 -2.39 -0.02 0.95 16 36 H 0.11 0.81 8.14 -2.38 -0.02 0.79 16 37 H 0.07 0.96 8.07 -2.39 -0.02 0.94 16 38 H 0.06 0.83 8.14 -2.39 -0.02 0.81 16 39 H 0.07 0.84 8.04 -2.39 -0.02 0.82 16 40 H 0.07 0.68 8.14 -2.39 -0.02 0.66 16 41 H 0.06 0.70 8.14 -2.39 -0.02 0.68 16 42 H 0.07 0.59 8.14 -2.39 -0.02 0.57 16 43 H 0.06 0.58 8.14 -2.39 -0.02 0.56 16 44 H 0.07 0.60 7.84 -2.39 -0.02 0.58 16 45 H 0.07 0.60 8.14 -2.38 -0.02 0.58 16 46 H 0.07 1.26 8.14 -2.39 -0.02 1.24 16 47 H 0.06 1.31 7.77 -2.38 -0.02 1.29 16 Total: -1.00 -73.54 382.24 0.16 -73.38 By element: Atomic # 1 Polarization: 10.10 SS G_CDS: 0.90 Total: 11.01 kcal Atomic # 6 Polarization: -58.39 SS G_CDS: 3.55 Total: -54.84 kcal Atomic # 7 Polarization: -79.14 SS G_CDS: -1.55 Total: -80.69 kcal Atomic # 8 Polarization: -71.54 SS G_CDS: -4.45 Total: -75.99 kcal Atomic # 14 Polarization: 44.51 SS G_CDS: 2.03 Total: 46.53 kcal Atomic # 16 Polarization: 80.92 SS G_CDS: -0.32 Total: 80.60 kcal Total: -73.54 0.16 -73.38 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000420729834.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -55.545 kcal (2) G-P(sol) polarization free energy of solvation -73.544 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -129.089 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.161 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.383 kcal (6) G-S(sol) free energy of system = (1) + (5) -128.928 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds