Wall clock time and date at job start Tue Mar 31 2020 12:01:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86794 * 120.00457 * 2 1 4 4 H 1.48498 * 109.47416 * 269.99983 * 3 2 1 5 5 H 1.48502 * 109.47099 * 29.99773 * 3 2 1 6 6 H 1.48503 * 109.47397 * 149.99698 * 3 2 1 7 7 C 1.37881 * 119.99834 * 179.97438 * 2 1 3 8 8 H 1.07994 * 120.00374 * 180.02562 * 7 2 1 9 9 C 1.50704 * 120.00013 * 0.02562 * 7 2 1 10 10 C 1.53000 * 109.47161 * 180.02562 * 9 7 2 11 11 C 1.53002 * 109.46897 * 180.02562 * 10 9 7 12 12 H 1.09000 * 109.46962 * 55.00059 * 11 10 9 13 13 N 1.46899 * 109.47183 * 294.99944 * 11 10 9 14 14 C 1.50703 * 109.46903 * 174.99962 * 11 10 9 15 15 O 1.21278 * 119.99985 * 100.00370 * 14 11 10 16 16 N 1.34779 * 119.99944 * 280.00082 * 14 11 10 17 17 C 1.46499 * 119.99872 * 180.02562 * 16 14 11 18 18 C 1.53000 * 109.46840 * 180.02562 * 17 16 14 19 19 C 1.50706 * 109.46735 * 180.02562 * 18 17 16 20 20 C 1.34240 * 126.49576 * 265.01863 * 19 18 17 21 21 N 1.36834 * 109.92614 * 180.02562 * 20 19 18 22 22 H 0.97000 * 125.05744 * 180.02562 * 21 20 19 23 23 C 1.37688 * 109.87498 * 0.02562 * 21 20 19 24 24 C 1.39125 * 133.50532 * 180.02562 * 23 21 20 25 25 C 1.37745 * 119.77780 * 179.97438 * 24 23 21 26 26 C 1.38831 * 120.66580 * 0.02562 * 25 24 23 27 27 C 1.36621 * 120.52830 * 359.97438 * 26 25 24 28 28 C 1.39635 * 119.76731 * 359.70393 * 27 26 25 29 29 H 0.97000 * 119.99904 * 0.02562 * 1 2 3 30 30 H 1.09002 * 109.46903 * 60.00182 * 9 7 2 31 31 H 1.09003 * 109.47116 * 299.99933 * 9 7 2 32 32 H 1.09002 * 109.47209 * 60.00191 * 10 9 7 33 33 H 1.09003 * 109.46906 * 299.99884 * 10 9 7 34 34 H 1.00900 * 110.99955 * 300.00306 * 13 11 10 35 35 H 1.00893 * 111.00269 * 63.95382 * 13 11 10 36 36 H 0.97000 * 119.99708 * 359.97438 * 16 14 11 37 37 H 1.09002 * 109.47391 * 59.99686 * 17 16 14 38 38 H 1.09001 * 109.46813 * 299.99742 * 17 16 14 39 39 H 1.09001 * 109.47194 * 299.99493 * 18 17 16 40 40 H 1.08992 * 109.47399 * 59.99666 * 18 17 16 41 41 H 1.07996 * 125.03993 * 0.02562 * 20 19 18 42 42 H 1.08005 * 120.10937 * 359.94753 * 24 23 21 43 43 H 1.08000 * 119.66666 * 179.97438 * 25 24 23 44 44 H 1.08007 * 119.73424 * 179.97438 * 26 25 24 45 45 H 1.08006 * 120.11777 * 180.02562 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 2.4968 2.0463 -1.4000 5 1 1.4467 2.6526 0.7000 6 1 3.5468 1.4400 0.7001 7 6 2.0045 -1.1941 0.0005 8 1 3.0844 -1.1942 0.0010 9 6 1.2509 -2.4992 0.0005 10 6 2.2451 -3.6622 0.0018 11 6 1.4800 -4.9871 0.0012 12 1 0.7888 -5.0071 -0.8414 13 7 0.7269 -5.1183 1.2556 14 6 2.4548 -6.1300 -0.1214 15 8 2.7854 -6.7534 0.8649 16 7 2.9590 -6.4592 -1.3272 17 6 3.9061 -7.5705 -1.4464 18 6 4.3210 -7.7321 -2.9102 19 6 5.2948 -8.8757 -3.0329 20 6 6.6343 -8.7872 -3.0335 21 7 7.1840 -10.0334 -3.1641 22 1 8.1349 -10.2231 -3.1898 23 6 6.1862 -10.9781 -3.2536 24 6 6.1875 -12.3622 -3.3942 25 6 4.9926 -13.0447 -3.4553 26 6 3.7844 -12.3653 -3.3786 27 6 3.7599 -11.0064 -3.2404 28 6 4.9594 -10.2950 -3.1696 29 1 -0.4850 0.8401 -0.0004 30 1 0.6246 -2.5571 -0.8897 31 1 0.6239 -2.5567 0.8903 32 1 2.8711 -3.6041 0.8923 33 1 2.8725 -3.6048 -0.8877 34 1 1.3458 -5.1025 2.0523 35 1 0.0221 -4.4003 1.3310 36 1 2.6942 -5.9608 -2.1161 37 1 3.4339 -8.4893 -1.0986 38 1 4.7878 -7.3631 -0.8400 39 1 3.4395 -7.9393 -3.5169 40 1 4.7933 -6.8133 -3.2575 41 1 7.1950 -7.8686 -2.9440 42 1 7.1224 -12.8996 -3.4557 43 1 4.9958 -14.1192 -3.5649 44 1 2.8563 -12.9156 -3.4285 45 1 2.8161 -10.4846 -3.1809 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000424083899.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:01:08 Heat of formation + Delta-G solvation = -2.021074 kcal Electronic energy + Delta-G solvation = -24630.547136 eV Core-core repulsion = 21033.144005 eV Total energy + Delta-G solvation = -3597.403131 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 315.169 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.53934 -39.50573 -37.20569 -35.85572 -35.14516 -32.97668 -32.81464 -30.62538 -29.85759 -29.55454 -28.21864 -26.33092 -24.20565 -23.11128 -22.66229 -22.03122 -20.71042 -20.02192 -19.32272 -18.06344 -17.18359 -16.67636 -16.19518 -15.98876 -15.71588 -15.24624 -14.79571 -14.58549 -14.42545 -14.33283 -14.07872 -13.93332 -13.77265 -13.15140 -12.98577 -12.70970 -12.63002 -12.19876 -12.14847 -11.97910 -11.88098 -11.66377 -11.33683 -11.05744 -10.99142 -10.91201 -10.67826 -9.96903 -9.90235 -9.82533 -9.26334 -9.16978 -8.88430 -8.48127 -8.43301 -8.14284 -7.91417 -6.07844 -4.10817 0.87060 1.38087 2.36399 2.82782 3.02594 3.27103 3.33991 3.37020 3.40705 3.67947 4.39850 4.43924 4.51640 4.73579 4.84132 4.94243 4.96494 5.04771 5.22232 5.23827 5.25335 5.28555 5.38140 5.41883 5.56542 5.63179 5.64662 5.75106 5.81148 5.99897 6.00945 6.23744 6.31794 6.36725 6.44119 6.51067 6.55021 6.62967 6.89923 6.90155 7.22359 7.48415 7.54075 7.63751 7.78335 7.89463 7.95196 8.32284 8.55821 8.95200 9.53894 11.03038 Molecular weight = 315.17amu Principal moments of inertia in cm(-1) A = 0.022599 B = 0.002105 C = 0.001995 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1238.669058 B =13297.212625 C =14034.531241 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.893 5.893 2 C 0.058 3.942 3 Si 0.893 3.107 4 H -0.280 1.280 5 H -0.286 1.286 6 H -0.274 1.274 7 C -0.523 4.523 8 H 0.054 0.946 9 C 0.024 3.976 10 C -0.137 4.137 11 C 0.074 3.926 12 H 0.096 0.904 13 N -0.831 5.831 14 C 0.524 3.476 15 O -0.540 6.540 16 N -0.736 5.736 17 C 0.127 3.873 18 C -0.055 4.055 19 C -0.165 4.165 20 C 0.057 3.943 21 N -0.596 5.596 22 H 0.415 0.585 23 C 0.094 3.906 24 C -0.133 4.133 25 C -0.100 4.100 26 C -0.148 4.148 27 C -0.068 4.068 28 C -0.100 4.100 29 H 0.261 0.739 30 H 0.018 0.982 31 H 0.018 0.982 32 H 0.054 0.946 33 H 0.056 0.944 34 H 0.345 0.655 35 H 0.354 0.646 36 H 0.401 0.599 37 H 0.065 0.935 38 H 0.063 0.937 39 H 0.077 0.923 40 H 0.078 0.922 41 H 0.171 0.829 42 H 0.118 0.882 43 H 0.123 0.877 44 H 0.122 0.878 45 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.091 -23.120 -10.167 28.002 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.532 5.532 2 C -0.144 4.144 3 Si 0.721 3.279 4 H -0.206 1.206 5 H -0.212 1.212 6 H -0.199 1.199 7 C -0.561 4.561 8 H 0.073 0.927 9 C -0.013 4.013 10 C -0.177 4.177 11 C -0.041 4.041 12 H 0.114 0.886 13 N -0.363 5.363 14 C 0.311 3.689 15 O -0.415 6.415 16 N -0.390 5.390 17 C 0.004 3.996 18 C -0.093 4.093 19 C -0.173 4.173 20 C -0.069 4.069 21 N -0.199 5.199 22 H 0.252 0.748 23 C -0.013 4.013 24 C -0.153 4.153 25 C -0.119 4.119 26 C -0.167 4.167 27 C -0.086 4.086 28 C -0.104 4.104 29 H 0.071 0.929 30 H 0.037 0.963 31 H 0.036 0.964 32 H 0.073 0.927 33 H 0.075 0.925 34 H 0.158 0.842 35 H 0.169 0.831 36 H 0.235 0.765 37 H 0.083 0.917 38 H 0.082 0.918 39 H 0.096 0.904 40 H 0.097 0.903 41 H 0.189 0.811 42 H 0.136 0.864 43 H 0.141 0.859 44 H 0.140 0.860 45 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges 12.081 -24.169 -9.707 28.711 hybrid contribution 1.289 2.081 -0.234 2.459 sum 13.370 -22.088 -9.940 27.667 Atomic orbital electron populations 1.69949 1.06003 1.26756 1.50466 1.25019 0.94880 0.99305 0.95184 0.86582 0.79850 0.83387 0.78116 1.20632 1.21168 1.19918 1.21184 0.93009 0.90912 1.51036 0.92737 1.19108 0.93743 0.91118 0.97362 1.22376 0.99851 0.94006 1.01456 1.21476 0.94687 0.92349 0.95560 0.88607 1.58738 1.18465 1.55846 1.03251 1.20875 0.81077 0.84420 0.82513 1.90633 1.60295 1.53486 1.37127 1.46020 1.47363 1.35430 1.10152 1.21256 0.92730 0.89798 0.95864 1.20081 0.97801 0.95549 0.95917 1.20005 0.92936 0.92457 1.11903 1.21680 0.93677 0.87975 1.03569 1.41728 1.08016 1.05284 1.64825 0.74791 1.18269 0.88076 0.90932 1.04008 1.20013 0.98753 0.90098 1.06474 1.20808 0.91663 0.99488 0.99944 1.20652 0.97952 0.94195 1.03906 1.20331 0.96549 0.93784 0.97952 1.19093 0.92549 0.92722 1.06077 0.92894 0.96316 0.96399 0.92735 0.92535 0.84172 0.83125 0.76488 0.91682 0.91849 0.90426 0.90348 0.81138 0.86422 0.85865 0.86023 0.85971 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.99 13.29 55.43 0.74 -25.26 16 2 C 0.06 1.61 5.46 -17.82 -0.10 1.51 16 3 Si 0.89 21.24 29.54 -169.99 -5.02 16.22 16 4 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 5 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16 6 H -0.27 -6.44 7.11 56.52 0.40 -6.03 16 7 C -0.52 -14.32 9.11 -34.44 -0.31 -14.64 16 8 H 0.05 1.47 7.74 -52.49 -0.41 1.06 16 9 C 0.02 0.58 4.74 -27.88 -0.13 0.44 16 10 C -0.14 -2.69 4.78 -26.73 -0.13 -2.82 16 11 C 0.07 1.28 3.21 -68.86 -0.22 1.06 16 12 H 0.10 1.54 8.14 -51.93 -0.42 1.12 16 13 N -0.83 -14.66 8.94 -5.65 -0.05 -14.71 16 14 C 0.52 8.87 7.08 -10.98 -0.08 8.79 16 15 O -0.54 -10.94 16.25 5.56 0.09 -10.85 16 16 N -0.74 -9.53 5.56 -60.29 -0.33 -9.86 16 17 C 0.13 1.50 5.66 -4.04 -0.02 1.48 16 18 C -0.06 -0.49 5.86 -27.88 -0.16 -0.65 16 19 C -0.17 -1.60 5.57 -102.71 -0.57 -2.17 16 20 C 0.06 0.45 11.73 -16.73 -0.20 0.26 16 21 N -0.60 -4.44 6.07 -10.65 -0.06 -4.50 16 22 H 0.42 1.81 8.96 -40.82 -0.37 1.45 16 23 C 0.09 0.90 7.28 -83.99 -0.61 0.29 16 24 C -0.13 -1.11 10.08 -39.43 -0.40 -1.50 16 25 C -0.10 -0.80 10.01 -39.54 -0.40 -1.20 16 26 C -0.15 -1.29 9.97 -39.95 -0.40 -1.69 16 27 C -0.07 -0.68 10.05 -39.64 -0.40 -1.07 16 28 C -0.10 -1.07 6.35 -105.14 -0.67 -1.73 16 29 H 0.26 7.21 8.31 -40.82 -0.34 6.87 16 30 H 0.02 0.47 8.14 -51.93 -0.42 0.05 16 31 H 0.02 0.45 6.87 -51.93 -0.36 0.09 16 32 H 0.05 1.12 8.14 -51.93 -0.42 0.70 16 33 H 0.06 1.05 8.14 -51.93 -0.42 0.63 16 34 H 0.35 6.19 8.58 -39.29 -0.34 5.85 16 35 H 0.35 6.21 7.55 -39.30 -0.30 5.91 16 36 H 0.40 4.24 8.47 -40.82 -0.35 3.89 16 37 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 38 H 0.06 0.82 8.14 -51.93 -0.42 0.39 16 39 H 0.08 0.65 8.14 -51.93 -0.42 0.23 16 40 H 0.08 0.60 8.14 -51.93 -0.42 0.18 16 41 H 0.17 0.88 8.06 -52.49 -0.42 0.46 16 42 H 0.12 0.71 8.06 -52.48 -0.42 0.29 16 43 H 0.12 0.69 8.06 -52.49 -0.42 0.27 16 44 H 0.12 0.83 8.06 -52.48 -0.42 0.40 16 45 H 0.12 1.10 8.06 -52.48 -0.42 0.67 16 LS Contribution 379.80 15.07 5.72 5.72 Total: -1.00 -34.01 379.80 -10.45 -44.47 By element: Atomic # 1 Polarization: 19.16 SS G_CDS: -6.74 Total: 12.42 kcal Atomic # 6 Polarization: -8.86 SS G_CDS: -4.79 Total: -13.65 kcal Atomic # 7 Polarization: -54.62 SS G_CDS: 0.29 Total: -54.33 kcal Atomic # 8 Polarization: -10.94 SS G_CDS: 0.09 Total: -10.85 kcal Atomic # 14 Polarization: 21.24 SS G_CDS: -5.02 Total: 16.22 kcal Total LS contribution 5.72 Total: 5.72 kcal Total: -34.01 -10.45 -44.47 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000424083899.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.448 kcal (2) G-P(sol) polarization free energy of solvation -34.015 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.433 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.454 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.469 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.021 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds