Wall clock time and date at job start Tue Mar 31 2020 12:01:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86794 * 120.00457 * 2 1 4 4 H 1.48498 * 109.47416 * 269.99983 * 3 2 1 5 5 H 1.48502 * 109.47099 * 29.99773 * 3 2 1 6 6 H 1.48503 * 109.47397 * 149.99698 * 3 2 1 7 7 C 1.37881 * 119.99834 * 179.97438 * 2 1 3 8 8 H 1.07994 * 120.00374 * 180.02562 * 7 2 1 9 9 C 1.50704 * 120.00013 * 0.02562 * 7 2 1 10 10 C 1.53000 * 109.47161 * 180.02562 * 9 7 2 11 11 C 1.53002 * 109.46897 * 180.02562 * 10 9 7 12 12 H 1.09000 * 109.46962 * 55.00059 * 11 10 9 13 13 N 1.46899 * 109.47183 * 294.99944 * 11 10 9 14 14 C 1.50703 * 109.46903 * 174.99962 * 11 10 9 15 15 O 1.21278 * 119.99985 * 100.00370 * 14 11 10 16 16 N 1.34779 * 119.99944 * 280.00082 * 14 11 10 17 17 C 1.46499 * 119.99872 * 180.02562 * 16 14 11 18 18 C 1.53000 * 109.46840 * 180.02562 * 17 16 14 19 19 C 1.50706 * 109.46735 * 180.02562 * 18 17 16 20 20 C 1.34240 * 126.49576 * 265.01863 * 19 18 17 21 21 N 1.36834 * 109.92614 * 180.02562 * 20 19 18 22 22 H 0.97000 * 125.05744 * 180.02562 * 21 20 19 23 23 C 1.37688 * 109.87498 * 0.02562 * 21 20 19 24 24 C 1.39125 * 133.50532 * 180.02562 * 23 21 20 25 25 C 1.37745 * 119.77780 * 179.97438 * 24 23 21 26 26 C 1.38831 * 120.66580 * 0.02562 * 25 24 23 27 27 C 1.36621 * 120.52830 * 359.97438 * 26 25 24 28 28 C 1.39635 * 119.76731 * 359.70393 * 27 26 25 29 29 H 0.97000 * 119.99904 * 0.02562 * 1 2 3 30 30 H 1.09002 * 109.46903 * 60.00182 * 9 7 2 31 31 H 1.09003 * 109.47116 * 299.99933 * 9 7 2 32 32 H 1.09002 * 109.47209 * 60.00191 * 10 9 7 33 33 H 1.09003 * 109.46906 * 299.99884 * 10 9 7 34 34 H 1.00900 * 110.99955 * 300.00306 * 13 11 10 35 35 H 1.00893 * 111.00269 * 63.95382 * 13 11 10 36 36 H 0.97000 * 119.99708 * 359.97438 * 16 14 11 37 37 H 1.09002 * 109.47391 * 59.99686 * 17 16 14 38 38 H 1.09001 * 109.46813 * 299.99742 * 17 16 14 39 39 H 1.09001 * 109.47194 * 299.99493 * 18 17 16 40 40 H 1.08992 * 109.47399 * 59.99666 * 18 17 16 41 41 H 1.07996 * 125.03993 * 0.02562 * 20 19 18 42 42 H 1.08005 * 120.10937 * 359.94753 * 24 23 21 43 43 H 1.08000 * 119.66666 * 179.97438 * 25 24 23 44 44 H 1.08007 * 119.73424 * 179.97438 * 26 25 24 45 45 H 1.08006 * 120.11777 * 180.02562 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 2.4968 2.0463 -1.4000 5 1 1.4467 2.6526 0.7000 6 1 3.5468 1.4400 0.7001 7 6 2.0045 -1.1941 0.0005 8 1 3.0844 -1.1942 0.0010 9 6 1.2509 -2.4992 0.0005 10 6 2.2451 -3.6622 0.0018 11 6 1.4800 -4.9871 0.0012 12 1 0.7888 -5.0071 -0.8414 13 7 0.7269 -5.1183 1.2556 14 6 2.4548 -6.1300 -0.1214 15 8 2.7854 -6.7534 0.8649 16 7 2.9590 -6.4592 -1.3272 17 6 3.9061 -7.5705 -1.4464 18 6 4.3210 -7.7321 -2.9102 19 6 5.2948 -8.8757 -3.0329 20 6 6.6343 -8.7872 -3.0335 21 7 7.1840 -10.0334 -3.1641 22 1 8.1349 -10.2231 -3.1898 23 6 6.1862 -10.9781 -3.2536 24 6 6.1875 -12.3622 -3.3942 25 6 4.9926 -13.0447 -3.4553 26 6 3.7844 -12.3653 -3.3786 27 6 3.7599 -11.0064 -3.2404 28 6 4.9594 -10.2950 -3.1696 29 1 -0.4850 0.8401 -0.0004 30 1 0.6246 -2.5571 -0.8897 31 1 0.6239 -2.5567 0.8903 32 1 2.8711 -3.6041 0.8923 33 1 2.8725 -3.6048 -0.8877 34 1 1.3458 -5.1025 2.0523 35 1 0.0221 -4.4003 1.3310 36 1 2.6942 -5.9608 -2.1161 37 1 3.4339 -8.4893 -1.0986 38 1 4.7878 -7.3631 -0.8400 39 1 3.4395 -7.9393 -3.5169 40 1 4.7933 -6.8133 -3.2575 41 1 7.1950 -7.8686 -2.9440 42 1 7.1224 -12.8996 -3.4557 43 1 4.9958 -14.1192 -3.5649 44 1 2.8563 -12.9156 -3.4285 45 1 2.8161 -10.4846 -3.1809 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000424083899.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:01:07 Heat of formation + Delta-G solvation = -25.194871 kcal Electronic energy + Delta-G solvation = -24631.552027 eV Core-core repulsion = 21033.144005 eV Total energy + Delta-G solvation = -3598.408022 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 315.169 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -42.15826 -40.85269 -37.83263 -37.20831 -36.44241 -34.81494 -33.81160 -31.66328 -31.37308 -30.19286 -29.12993 -27.84050 -25.77663 -23.88306 -23.68549 -22.66084 -22.31646 -21.27139 -20.17107 -18.91377 -18.57842 -17.99993 -17.30737 -17.16451 -16.54456 -16.39195 -16.22111 -15.93692 -15.55158 -15.27950 -15.20220 -14.90540 -14.67324 -14.57258 -14.40335 -13.94224 -13.53446 -13.47060 -13.35363 -13.00992 -12.91588 -12.71518 -12.61842 -12.52624 -12.51336 -12.07233 -11.77902 -11.70926 -11.63306 -11.28203 -10.74453 -10.54343 -10.49237 -10.06341 -9.61803 -9.12781 -8.55074 -8.19734 -6.29893 0.23207 0.71997 1.40705 1.41633 1.52090 1.65665 1.69632 2.20617 2.33936 2.41653 3.00655 3.13856 3.77983 3.81302 3.84341 3.92400 4.13482 4.16241 4.21793 4.24249 4.29278 4.31549 4.46032 4.55391 4.64674 4.70300 4.74260 4.87135 4.90790 4.97192 5.08230 5.11541 5.14401 5.31185 5.48718 5.50091 5.60259 5.68383 5.72647 5.81054 5.82879 5.85728 6.10186 6.23293 6.26987 6.49693 6.59794 6.73713 6.85767 7.28929 7.39002 8.90961 Molecular weight = 315.17amu Principal moments of inertia in cm(-1) A = 0.022599 B = 0.002105 C = 0.001995 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1238.669058 B =13297.212625 C =14034.531241 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.927 5.927 2 C 0.003 3.997 3 Si 0.960 3.040 4 H -0.271 1.271 5 H -0.284 1.284 6 H -0.268 1.268 7 C -0.543 4.543 8 H 0.055 0.945 9 C 0.029 3.971 10 C -0.120 4.120 11 C 0.081 3.919 12 H 0.111 0.889 13 N -0.832 5.832 14 C 0.525 3.475 15 O -0.577 6.577 16 N -0.718 5.718 17 C 0.133 3.867 18 C -0.041 4.041 19 C -0.196 4.196 20 C 0.067 3.933 21 N -0.587 5.587 22 H 0.430 0.570 23 C 0.074 3.926 24 C -0.136 4.136 25 C -0.108 4.108 26 C -0.155 4.155 27 C -0.092 4.092 28 C -0.126 4.126 29 H 0.263 0.737 30 H 0.003 0.997 31 H 0.001 0.999 32 H 0.043 0.957 33 H 0.069 0.931 34 H 0.343 0.657 35 H 0.352 0.648 36 H 0.415 0.585 37 H 0.047 0.953 38 H 0.054 0.946 39 H 0.081 0.919 40 H 0.096 0.904 41 H 0.200 0.800 42 H 0.140 0.860 43 H 0.148 0.852 44 H 0.136 0.864 45 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.895 -23.322 -11.333 29.418 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.567 5.567 2 C -0.195 4.195 3 Si 0.785 3.215 4 H -0.196 1.196 5 H -0.210 1.210 6 H -0.192 1.192 7 C -0.581 4.581 8 H 0.074 0.926 9 C -0.008 4.008 10 C -0.160 4.160 11 C -0.034 4.034 12 H 0.129 0.871 13 N -0.363 5.363 14 C 0.311 3.689 15 O -0.456 6.456 16 N -0.370 5.370 17 C 0.009 3.991 18 C -0.079 4.079 19 C -0.204 4.204 20 C -0.060 4.060 21 N -0.191 5.191 22 H 0.269 0.731 23 C -0.033 4.033 24 C -0.157 4.157 25 C -0.127 4.127 26 C -0.174 4.174 27 C -0.111 4.111 28 C -0.131 4.131 29 H 0.072 0.928 30 H 0.021 0.979 31 H 0.019 0.981 32 H 0.061 0.939 33 H 0.088 0.912 34 H 0.156 0.844 35 H 0.167 0.833 36 H 0.252 0.748 37 H 0.065 0.935 38 H 0.072 0.928 39 H 0.100 0.900 40 H 0.115 0.885 41 H 0.217 0.783 42 H 0.158 0.842 43 H 0.165 0.835 44 H 0.154 0.846 45 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges 13.913 -24.387 -10.921 30.126 hybrid contribution 0.739 2.073 0.111 2.204 sum 14.652 -22.314 -10.810 28.800 Atomic orbital electron populations 1.70064 1.07484 1.27716 1.51401 1.25883 0.95754 1.03018 0.94843 0.85527 0.78585 0.78918 0.78490 1.19639 1.20954 1.19247 1.21625 0.93373 0.92421 1.50717 0.92635 1.18978 0.94063 0.92023 0.95730 1.22130 0.98771 0.93600 1.01503 1.21425 0.94770 0.91347 0.95901 0.87140 1.58754 1.18446 1.55656 1.03451 1.20754 0.80912 0.84104 0.83115 1.90620 1.61575 1.54781 1.38598 1.45902 1.46424 1.35256 1.09459 1.21278 0.91623 0.88270 0.97912 1.19958 0.98118 0.96302 0.93555 1.20148 0.93898 0.92242 1.14076 1.22159 0.93467 0.88949 1.01409 1.41770 1.08583 1.04831 1.63920 0.73085 1.18544 0.88372 0.91746 1.04674 1.20359 0.99896 0.89878 1.05561 1.21156 0.91314 1.00796 0.99444 1.20941 0.99132 0.93996 1.03294 1.20502 0.96650 0.94583 0.99341 1.19435 0.93275 0.93667 1.06724 0.92779 0.97850 0.98055 0.93857 0.91209 0.84412 0.83269 0.74807 0.93500 0.92761 0.90049 0.88545 0.78287 0.84183 0.83460 0.84564 0.86094 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -54.23 13.29 21.45 0.28 -53.94 16 2 C 0.00 0.19 5.46 84.66 0.46 0.65 16 3 Si 0.96 43.16 29.54 68.60 2.03 45.19 16 4 H -0.27 -11.72 7.11 99.48 0.71 -11.01 16 5 H -0.28 -12.59 7.11 99.48 0.71 -11.88 16 6 H -0.27 -11.68 7.11 99.48 0.71 -10.97 16 7 C -0.54 -29.64 9.11 25.60 0.23 -29.41 16 8 H 0.06 2.95 7.74 -2.91 -0.02 2.92 16 9 C 0.03 1.43 4.74 29.85 0.14 1.57 16 10 C -0.12 -4.65 4.78 30.59 0.15 -4.50 16 11 C 0.08 2.73 3.21 44.17 0.14 2.87 16 12 H 0.11 3.42 8.14 -2.39 -0.02 3.40 16 13 N -0.83 -29.39 8.94 -171.80 -1.54 -30.93 16 14 C 0.52 17.41 7.08 87.66 0.62 18.03 16 15 O -0.58 -23.41 16.25 -3.02 -0.05 -23.46 16 16 N -0.72 -17.71 5.56 -463.05 -2.57 -20.29 16 17 C 0.13 3.04 5.66 86.38 0.49 3.53 16 18 C -0.04 -0.68 5.86 29.85 0.17 -0.50 16 19 C -0.20 -3.60 5.57 -18.63 -0.10 -3.70 16 20 C 0.07 0.94 11.73 83.00 0.97 1.91 16 21 N -0.59 -7.75 6.07 -187.61 -1.14 -8.89 16 22 H 0.43 2.85 8.96 -92.71 -0.83 2.02 16 23 C 0.07 1.35 7.28 39.03 0.28 1.63 16 24 C -0.14 -2.09 10.08 22.37 0.23 -1.86 16 25 C -0.11 -1.61 10.01 22.30 0.22 -1.39 16 26 C -0.15 -2.65 9.97 22.03 0.22 -2.43 16 27 C -0.09 -1.88 10.05 22.23 0.22 -1.65 16 28 C -0.13 -2.67 6.35 -20.20 -0.13 -2.80 16 29 H 0.26 14.57 8.31 -92.71 -0.77 13.80 16 30 H 0.00 0.16 8.14 -2.39 -0.02 0.14 16 31 H 0.00 0.06 6.87 -2.39 -0.02 0.04 16 32 H 0.04 1.77 8.14 -2.39 -0.02 1.75 16 33 H 0.07 2.49 8.14 -2.39 -0.02 2.47 16 34 H 0.34 12.43 8.58 -89.69 -0.77 11.66 16 35 H 0.35 12.52 7.55 -89.70 -0.68 11.85 16 36 H 0.42 7.95 8.47 -92.71 -0.79 7.17 16 37 H 0.05 1.26 8.14 -2.39 -0.02 1.24 16 38 H 0.05 1.36 8.14 -2.39 -0.02 1.34 16 39 H 0.08 1.27 8.14 -2.39 -0.02 1.25 16 40 H 0.10 1.24 8.14 -2.39 -0.02 1.22 16 41 H 0.20 1.45 8.06 -2.91 -0.02 1.43 16 42 H 0.14 1.39 8.06 -2.91 -0.02 1.36 16 43 H 0.15 1.36 8.06 -2.91 -0.02 1.34 16 44 H 0.14 1.77 8.06 -2.91 -0.02 1.75 16 45 H 0.12 2.29 8.06 -2.91 -0.02 2.27 16 Total: -1.00 -73.12 379.80 -0.68 -73.81 By element: Atomic # 1 Polarization: 38.60 SS G_CDS: -2.02 Total: 36.57 kcal Atomic # 6 Polarization: -22.39 SS G_CDS: 4.33 Total: -18.07 kcal Atomic # 7 Polarization: -109.08 SS G_CDS: -4.96 Total: -114.04 kcal Atomic # 8 Polarization: -23.41 SS G_CDS: -0.05 Total: -23.46 kcal Atomic # 14 Polarization: 43.16 SS G_CDS: 2.03 Total: 45.19 kcal Total: -73.12 -0.68 -73.81 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000424083899.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.613 kcal (2) G-P(sol) polarization free energy of solvation -73.125 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.512 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.683 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.808 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.195 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds