Wall clock time and date at job start Tue Mar 31 2020 12:07:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86798 * 120.00121 * 2 1 4 4 H 1.48496 * 109.47369 * 359.97438 * 3 2 1 5 5 H 1.48506 * 109.47205 * 119.99948 * 3 2 1 6 6 H 1.48507 * 109.46959 * 239.99764 * 3 2 1 7 7 C 1.37875 * 119.99681 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00225 * 187.13997 * 7 2 1 9 9 C 1.50699 * 120.00017 * 7.14031 * 7 2 1 10 10 C 1.53001 * 115.55174 * 275.16466 * 9 7 2 11 11 S 1.81402 * 109.46891 * 299.72056 * 10 9 7 12 12 O 1.42104 * 110.54641 * 297.65190 * 11 10 9 13 13 O 1.42102 * 110.54262 * 74.40291 * 11 10 9 14 14 N 1.65598 * 104.44974 * 186.02560 * 11 10 9 15 15 C 1.46500 * 120.00011 * 65.00162 * 14 11 10 16 16 C 1.52995 * 109.47298 * 165.00228 * 15 14 11 17 17 C 1.53003 * 109.47426 * 180.02562 * 16 15 14 18 18 C 1.52995 * 109.47426 * 179.97438 * 17 16 15 19 19 C 1.54275 * 110.03104 * 292.90721 * 18 17 16 20 20 C 1.54965 * 104.15593 * 217.13460 * 19 18 17 21 21 C 1.54886 * 102.77988 * 37.89128 * 20 19 18 22 22 C 1.53876 * 110.03277 * 175.68843 * 18 17 16 23 23 C 1.53008 * 117.49997 * 129.49539 * 9 7 2 24 24 C 1.53003 * 117.49908 * 60.83576 * 9 7 2 25 25 H 0.97000 * 120.00212 * 175.44181 * 1 2 3 26 26 H 1.08999 * 109.47388 * 59.71929 * 10 9 7 27 27 H 1.08995 * 109.47269 * 179.72483 * 10 9 7 28 28 H 0.97001 * 119.99898 * 245.00359 * 14 11 10 29 29 H 1.09005 * 109.46818 * 284.99824 * 15 14 11 30 30 H 1.08996 * 109.47234 * 44.99957 * 15 14 11 31 31 H 1.09003 * 109.47187 * 299.99999 * 16 15 14 32 32 H 1.09006 * 109.47324 * 59.99660 * 16 15 14 33 33 H 1.09005 * 109.46716 * 299.99612 * 17 16 15 34 34 H 1.08996 * 109.47207 * 59.99667 * 17 16 15 35 35 H 1.09007 * 110.02137 * 54.29620 * 18 17 16 36 36 H 1.09000 * 110.48089 * 335.78328 * 19 18 17 37 37 H 1.09004 * 110.48330 * 98.42564 * 19 18 17 38 38 H 1.08993 * 110.72254 * 279.57292 * 20 19 18 39 39 H 1.09009 * 110.91859 * 156.29282 * 20 19 18 40 40 H 1.08994 * 110.48722 * 203.40377 * 21 20 19 41 41 H 1.08998 * 110.60428 * 80.80849 * 21 20 19 42 42 H 1.08999 * 110.03241 * 238.56480 * 22 18 17 43 43 H 1.08995 * 110.02915 * 0.02562 * 22 18 17 44 44 H 1.08998 * 117.49599 * 359.97438 * 23 9 7 45 45 H 1.08992 * 117.49997 * 145.02034 * 23 9 7 46 46 H 1.09005 * 117.49778 * 214.97916 * 24 9 7 47 47 H 1.08996 * 117.49811 * 359.97438 * 24 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 1.2843 2.7464 -0.0006 5 1 3.1030 1.6964 1.2125 6 1 3.1030 1.6963 -1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0782 -1.1978 0.1168 9 6 1.2597 -2.4941 -0.1611 10 6 0.6783 -3.0859 1.1245 11 16 2.0208 -3.4165 2.2989 12 8 2.9219 -4.3788 1.7683 13 8 2.4954 -2.2040 2.8680 14 7 1.2840 -4.1983 3.5592 15 6 0.6851 -5.5191 3.3523 16 6 0.4142 -6.1744 4.7081 17 6 -0.2107 -7.5541 4.4920 18 6 -0.4810 -8.2096 5.8478 19 6 0.8522 -8.5297 6.5551 20 6 0.5891 -9.8815 7.2657 21 6 -0.2907 -10.6411 6.2420 22 6 -1.2076 -9.5513 5.6490 23 6 1.7679 -3.4723 -1.2223 24 6 0.4676 -2.6985 -1.4541 25 1 -0.4850 -0.8374 -0.0668 26 1 -0.0238 -2.3782 1.5652 27 1 0.1598 -4.0165 0.8941 28 1 1.2490 -3.7815 4.4345 29 1 -0.2525 -5.4115 2.8070 30 1 1.3701 -6.1427 2.7778 31 1 1.3519 -6.2820 5.2535 32 1 -0.2707 -5.5508 5.2827 33 1 -1.1483 -7.4469 3.9465 34 1 0.4746 -8.1775 3.9177 35 1 -1.0836 -7.5471 6.4691 36 1 1.6558 -8.6321 5.8259 37 1 1.0930 -7.7554 7.2836 38 1 0.0493 -9.7275 8.1999 39 1 1.5226 -10.4155 7.4440 40 1 -0.8830 -11.4072 6.7424 41 1 0.3264 -11.0864 5.4617 42 1 -2.1625 -9.5403 6.1746 43 1 -1.3673 -9.7357 4.5867 44 1 2.6406 -3.1753 -1.8037 45 1 1.6877 -4.5373 -1.0047 46 1 -0.4675 -3.2549 -1.3889 47 1 0.4848 -1.8925 -2.1876 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000451027837.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:07:40 Heat of formation + Delta-G solvation = -91.116735 kcal Electronic energy + Delta-G solvation = -24700.705298 eV Core-core repulsion = 21202.589890 eV Total energy + Delta-G solvation = -3498.115408 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 315.166 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -38.89792 -37.07287 -36.40175 -35.94061 -35.10621 -32.69639 -31.97953 -29.07408 -28.50849 -28.30306 -24.97148 -24.48712 -21.92914 -21.40574 -20.85650 -19.95292 -19.80009 -18.69305 -16.94654 -16.83714 -16.19858 -16.06307 -15.54891 -15.31506 -14.99643 -14.31426 -14.02132 -13.78093 -13.71593 -13.62534 -13.20496 -13.01648 -12.61337 -12.53282 -11.94066 -11.83936 -11.54496 -11.40118 -11.37144 -11.29638 -11.25293 -11.17177 -11.14671 -10.93332 -10.82404 -10.76616 -10.63459 -10.60542 -10.48628 -10.35001 -10.07618 -9.72789 -9.25096 -8.66378 -8.48507 -8.31957 -6.45974 -4.24636 1.02405 3.41892 3.45584 3.50156 3.66715 4.26282 4.33960 4.38499 4.48864 4.52230 4.76146 4.83341 4.90942 4.94423 5.04583 5.14739 5.15757 5.21608 5.29449 5.33685 5.36749 5.43484 5.51101 5.54762 5.56577 5.61879 5.65007 5.73289 5.79011 5.81824 5.91855 5.98249 6.02233 6.05621 6.09743 6.15392 6.19135 6.25861 6.35005 6.53373 6.75159 7.01732 7.17161 7.24756 8.03602 8.33574 8.76847 9.54657 10.94094 Molecular weight = 315.17amu Principal moments of inertia in cm(-1) A = 0.026901 B = 0.002731 C = 0.002650 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1040.600959 B =10248.424072 C =10562.048164 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.897 5.897 2 C 0.040 3.960 3 Si 1.063 2.937 4 H -0.281 1.281 5 H -0.280 1.280 6 H -0.285 1.285 7 C -0.593 4.593 8 H 0.062 0.938 9 C 0.022 3.978 10 C -0.568 4.568 11 S 2.618 3.382 12 O -0.972 6.972 13 O -0.946 6.946 14 N -1.134 6.134 15 C 0.114 3.886 16 C -0.126 4.126 17 C -0.113 4.113 18 C -0.092 4.092 19 C -0.122 4.122 20 C -0.127 4.127 21 C -0.126 4.126 22 C -0.122 4.122 23 C -0.190 4.190 24 C -0.165 4.165 25 H 0.275 0.725 26 H 0.126 0.874 27 H 0.098 0.902 28 H 0.411 0.589 29 H 0.059 0.941 30 H 0.076 0.924 31 H 0.071 0.929 32 H 0.068 0.932 33 H 0.065 0.935 34 H 0.067 0.933 35 H 0.071 0.929 36 H 0.069 0.931 37 H 0.064 0.936 38 H 0.064 0.936 39 H 0.064 0.936 40 H 0.061 0.939 41 H 0.064 0.936 42 H 0.061 0.939 43 H 0.065 0.935 44 H 0.089 0.911 45 H 0.075 0.925 46 H 0.069 0.931 47 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.743 -17.912 11.543 21.635 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.531 5.531 2 C -0.167 4.167 3 Si 0.890 3.110 4 H -0.206 1.206 5 H -0.206 1.206 6 H -0.211 1.211 7 C -0.630 4.630 8 H 0.080 0.920 9 C 0.020 3.980 10 C -0.700 4.700 11 S 2.714 3.286 12 O -0.962 6.962 13 O -0.936 6.936 14 N -0.891 5.891 15 C -0.013 4.013 16 C -0.165 4.165 17 C -0.151 4.151 18 C -0.111 4.111 19 C -0.160 4.160 20 C -0.164 4.164 21 C -0.163 4.163 22 C -0.160 4.160 23 C -0.227 4.227 24 C -0.204 4.204 25 H 0.086 0.914 26 H 0.144 0.856 27 H 0.117 0.883 28 H 0.244 0.756 29 H 0.077 0.923 30 H 0.095 0.905 31 H 0.090 0.910 32 H 0.087 0.913 33 H 0.084 0.916 34 H 0.086 0.914 35 H 0.089 0.911 36 H 0.087 0.913 37 H 0.083 0.917 38 H 0.083 0.917 39 H 0.082 0.918 40 H 0.080 0.920 41 H 0.083 0.917 42 H 0.080 0.920 43 H 0.084 0.916 44 H 0.107 0.893 45 H 0.094 0.906 46 H 0.088 0.912 47 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -3.014 -16.155 11.392 19.997 hybrid contribution -0.738 -1.603 0.116 1.769 sum -3.752 -17.758 11.508 21.491 Atomic orbital electron populations 1.70771 1.06865 1.31552 1.43876 1.25824 0.96350 1.02519 0.92046 0.83639 0.75230 0.75002 0.77131 1.20645 1.20636 1.21148 1.21391 0.94829 0.89651 1.57119 0.91983 1.18547 0.99548 0.95787 0.84137 1.30106 1.17506 1.07689 1.14717 1.04776 0.76218 0.73301 0.74329 1.93491 1.60557 1.62023 1.80168 1.93561 1.78394 1.45922 1.75758 1.56003 1.77409 1.28735 1.26979 1.21268 0.97854 0.83687 0.98448 1.21803 1.01777 0.96204 0.96709 1.21694 1.01062 0.95556 0.96818 1.21792 0.96468 0.96404 0.96421 1.22502 0.97319 0.96872 0.99274 1.22514 0.99534 0.96193 0.98183 1.22358 0.97954 0.97557 0.98450 1.22229 0.98416 0.94255 1.01087 1.23045 0.98196 0.95778 1.05720 1.22793 0.93262 1.02125 1.02231 0.91423 0.85589 0.88301 0.75585 0.92276 0.90522 0.90984 0.91293 0.91602 0.91419 0.91055 0.91252 0.91725 0.91737 0.91773 0.92017 0.91687 0.92025 0.91610 0.89272 0.90648 0.91230 0.89299 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -25.94 13.57 55.43 0.75 -25.19 16 2 C 0.04 1.12 5.39 -17.82 -0.10 1.03 16 3 Si 1.06 25.46 29.91 -169.99 -5.08 20.38 16 4 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 5 H -0.28 -6.64 7.11 56.52 0.40 -6.23 16 6 H -0.29 -6.47 7.11 56.52 0.40 -6.07 16 7 C -0.59 -16.55 7.88 -34.44 -0.27 -16.82 16 8 H 0.06 1.78 7.82 -52.49 -0.41 1.37 16 9 C 0.02 0.54 0.95 -155.65 -0.15 0.39 16 10 C -0.57 -11.80 5.87 37.16 0.22 -11.58 16 11 S 2.62 53.55 5.10 -107.50 -0.55 53.00 16 12 O -0.97 -21.71 17.50 -57.54 -1.01 -22.71 16 13 O -0.95 -23.09 17.57 -57.54 -1.01 -24.11 16 14 N -1.13 -16.85 5.89 -10.61 -0.06 -16.91 16 15 C 0.11 1.38 6.13 -4.04 -0.02 1.36 16 16 C -0.13 -1.19 5.20 -26.73 -0.14 -1.33 16 17 C -0.11 -0.92 4.34 -26.73 -0.12 -1.04 16 18 C -0.09 -0.69 2.93 -89.50 -0.26 -0.95 16 19 C -0.12 -0.92 5.50 -25.03 -0.14 -1.06 16 20 C -0.13 -0.86 6.91 -24.70 -0.17 -1.03 16 21 C -0.13 -0.84 6.83 -25.07 -0.17 -1.01 16 22 C -0.12 -0.85 6.46 -25.61 -0.17 -1.02 16 23 C -0.19 -4.15 9.95 -26.69 -0.27 -4.42 16 24 C -0.17 -3.69 8.74 -26.69 -0.23 -3.92 16 25 H 0.27 7.72 6.17 -40.82 -0.25 7.46 16 26 H 0.13 2.69 7.79 -51.92 -0.40 2.29 16 27 H 0.10 1.69 8.11 -51.93 -0.42 1.27 16 28 H 0.41 5.34 8.62 -34.47 -0.30 5.05 16 29 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 30 H 0.08 0.97 7.69 -51.93 -0.40 0.57 16 31 H 0.07 0.68 7.48 -51.93 -0.39 0.29 16 32 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 33 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 34 H 0.07 0.56 8.02 -51.93 -0.42 0.14 16 35 H 0.07 0.54 8.14 -51.93 -0.42 0.11 16 36 H 0.07 0.55 7.77 -51.93 -0.40 0.15 16 37 H 0.06 0.48 8.14 -51.93 -0.42 0.05 16 38 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 39 H 0.06 0.41 8.14 -51.92 -0.42 -0.01 16 40 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 41 H 0.06 0.44 8.14 -51.93 -0.42 0.01 16 42 H 0.06 0.41 8.14 -51.93 -0.42 -0.02 16 43 H 0.07 0.45 7.67 -51.93 -0.40 0.06 16 44 H 0.09 1.94 8.14 -51.93 -0.42 1.52 16 45 H 0.08 1.47 8.14 -51.93 -0.42 1.05 16 46 H 0.07 1.39 8.14 -51.93 -0.42 0.97 16 47 H 0.09 2.10 8.14 -51.93 -0.42 1.68 16 LS Contribution 385.08 15.07 5.80 5.80 Total: -1.00 -33.57 385.08 -11.65 -45.21 By element: Atomic # 1 Polarization: 14.42 SS G_CDS: -8.51 Total: 5.92 kcal Atomic # 6 Polarization: -39.42 SS G_CDS: -1.98 Total: -41.40 kcal Atomic # 7 Polarization: -42.79 SS G_CDS: 0.69 Total: -42.10 kcal Atomic # 8 Polarization: -44.80 SS G_CDS: -2.02 Total: -46.82 kcal Atomic # 14 Polarization: 25.46 SS G_CDS: -5.08 Total: 20.38 kcal Atomic # 16 Polarization: 53.55 SS G_CDS: -0.55 Total: 53.00 kcal Total LS contribution 5.80 Total: 5.80 kcal Total: -33.57 -11.65 -45.21 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000451027837.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.903 kcal (2) G-P(sol) polarization free energy of solvation -33.566 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.470 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.647 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.213 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.117 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds