Wall clock time and date at job start Tue Mar 31 2020 12:07:40
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.31516 * 1
3 3 Si 1.86798 * 120.00121 * 2 1
4 4 H 1.48496 * 109.47369 * 359.97438 * 3 2 1
5 5 H 1.48506 * 109.47205 * 119.99948 * 3 2 1
6 6 H 1.48507 * 109.46959 * 239.99764 * 3 2 1
7 7 C 1.37875 * 119.99681 * 179.97438 * 2 1 3
8 8 H 1.07999 * 120.00225 * 187.13997 * 7 2 1
9 9 C 1.50699 * 120.00017 * 7.14031 * 7 2 1
10 10 C 1.53001 * 115.55174 * 275.16466 * 9 7 2
11 11 S 1.81402 * 109.46891 * 299.72056 * 10 9 7
12 12 O 1.42104 * 110.54641 * 297.65190 * 11 10 9
13 13 O 1.42102 * 110.54262 * 74.40291 * 11 10 9
14 14 N 1.65598 * 104.44974 * 186.02560 * 11 10 9
15 15 C 1.46500 * 120.00011 * 65.00162 * 14 11 10
16 16 C 1.52995 * 109.47298 * 165.00228 * 15 14 11
17 17 C 1.53003 * 109.47426 * 180.02562 * 16 15 14
18 18 C 1.52995 * 109.47426 * 179.97438 * 17 16 15
19 19 C 1.54275 * 110.03104 * 292.90721 * 18 17 16
20 20 C 1.54965 * 104.15593 * 217.13460 * 19 18 17
21 21 C 1.54886 * 102.77988 * 37.89128 * 20 19 18
22 22 C 1.53876 * 110.03277 * 175.68843 * 18 17 16
23 23 C 1.53008 * 117.49997 * 129.49539 * 9 7 2
24 24 C 1.53003 * 117.49908 * 60.83576 * 9 7 2
25 25 H 0.97000 * 120.00212 * 175.44181 * 1 2 3
26 26 H 1.08999 * 109.47388 * 59.71929 * 10 9 7
27 27 H 1.08995 * 109.47269 * 179.72483 * 10 9 7
28 28 H 0.97001 * 119.99898 * 245.00359 * 14 11 10
29 29 H 1.09005 * 109.46818 * 284.99824 * 15 14 11
30 30 H 1.08996 * 109.47234 * 44.99957 * 15 14 11
31 31 H 1.09003 * 109.47187 * 299.99999 * 16 15 14
32 32 H 1.09006 * 109.47324 * 59.99660 * 16 15 14
33 33 H 1.09005 * 109.46716 * 299.99612 * 17 16 15
34 34 H 1.08996 * 109.47207 * 59.99667 * 17 16 15
35 35 H 1.09007 * 110.02137 * 54.29620 * 18 17 16
36 36 H 1.09000 * 110.48089 * 335.78328 * 19 18 17
37 37 H 1.09004 * 110.48330 * 98.42564 * 19 18 17
38 38 H 1.08993 * 110.72254 * 279.57292 * 20 19 18
39 39 H 1.09009 * 110.91859 * 156.29282 * 20 19 18
40 40 H 1.08994 * 110.48722 * 203.40377 * 21 20 19
41 41 H 1.08998 * 110.60428 * 80.80849 * 21 20 19
42 42 H 1.08999 * 110.03241 * 238.56480 * 22 18 17
43 43 H 1.08995 * 110.02915 * 0.02562 * 22 18 17
44 44 H 1.08998 * 117.49599 * 359.97438 * 23 9 7
45 45 H 1.08992 * 117.49997 * 145.02034 * 23 9 7
46 46 H 1.09005 * 117.49778 * 214.97916 * 24 9 7
47 47 H 1.08996 * 117.49811 * 359.97438 * 24 9 7
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3152 0.0000 0.0000
3 14 2.2492 1.6177 0.0000
4 1 1.2843 2.7464 -0.0006
5 1 3.1030 1.6964 1.2125
6 1 3.1030 1.6963 -1.2125
7 6 2.0045 -1.1941 0.0005
8 1 3.0782 -1.1978 0.1168
9 6 1.2597 -2.4941 -0.1611
10 6 0.6783 -3.0859 1.1245
11 16 2.0208 -3.4165 2.2989
12 8 2.9219 -4.3788 1.7683
13 8 2.4954 -2.2040 2.8680
14 7 1.2840 -4.1983 3.5592
15 6 0.6851 -5.5191 3.3523
16 6 0.4142 -6.1744 4.7081
17 6 -0.2107 -7.5541 4.4920
18 6 -0.4810 -8.2096 5.8478
19 6 0.8522 -8.5297 6.5551
20 6 0.5891 -9.8815 7.2657
21 6 -0.2907 -10.6411 6.2420
22 6 -1.2076 -9.5513 5.6490
23 6 1.7679 -3.4723 -1.2223
24 6 0.4676 -2.6985 -1.4541
25 1 -0.4850 -0.8374 -0.0668
26 1 -0.0238 -2.3782 1.5652
27 1 0.1598 -4.0165 0.8941
28 1 1.2490 -3.7815 4.4345
29 1 -0.2525 -5.4115 2.8070
30 1 1.3701 -6.1427 2.7778
31 1 1.3519 -6.2820 5.2535
32 1 -0.2707 -5.5508 5.2827
33 1 -1.1483 -7.4469 3.9465
34 1 0.4746 -8.1775 3.9177
35 1 -1.0836 -7.5471 6.4691
36 1 1.6558 -8.6321 5.8259
37 1 1.0930 -7.7554 7.2836
38 1 0.0493 -9.7275 8.1999
39 1 1.5226 -10.4155 7.4440
40 1 -0.8830 -11.4072 6.7424
41 1 0.3264 -11.0864 5.4617
42 1 -2.1625 -9.5403 6.1746
43 1 -1.3673 -9.7357 4.5867
44 1 2.6406 -3.1753 -1.8037
45 1 1.6877 -4.5373 -1.0047
46 1 -0.4675 -3.2549 -1.3889
47 1 0.4848 -1.8925 -2.1876
RHF calculation, no. of doubly occupied orbitals= 58
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000451027837.mol2 47
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 12:07:40
Heat of formation + Delta-G solvation = -91.116735 kcal
Electronic energy + Delta-G solvation = -24700.705298 eV
Core-core repulsion = 21202.589890 eV
Total energy + Delta-G solvation = -3498.115408 eV
No. of doubly occupied orbitals = 58
Molecular weight
(most abundant/longest-lived isotopes) = 315.166 amu
Computer time = 0.81 seconds
Orbital eigenvalues (eV)
-38.89792 -37.07287 -36.40175 -35.94061 -35.10621 -32.69639 -31.97953 -29.07408
-28.50849 -28.30306 -24.97148 -24.48712 -21.92914 -21.40574 -20.85650 -19.95292
-19.80009 -18.69305 -16.94654 -16.83714 -16.19858 -16.06307 -15.54891 -15.31506
-14.99643 -14.31426 -14.02132 -13.78093 -13.71593 -13.62534 -13.20496 -13.01648
-12.61337 -12.53282 -11.94066 -11.83936 -11.54496 -11.40118 -11.37144 -11.29638
-11.25293 -11.17177 -11.14671 -10.93332 -10.82404 -10.76616 -10.63459 -10.60542
-10.48628 -10.35001 -10.07618 -9.72789 -9.25096 -8.66378 -8.48507 -8.31957
-6.45974 -4.24636 1.02405 3.41892 3.45584 3.50156 3.66715 4.26282
4.33960 4.38499 4.48864 4.52230 4.76146 4.83341 4.90942 4.94423
5.04583 5.14739 5.15757 5.21608 5.29449 5.33685 5.36749 5.43484
5.51101 5.54762 5.56577 5.61879 5.65007 5.73289 5.79011 5.81824
5.91855 5.98249 6.02233 6.05621 6.09743 6.15392 6.19135 6.25861
6.35005 6.53373 6.75159 7.01732 7.17161 7.24756 8.03602 8.33574
8.76847 9.54657 10.94094
Molecular weight = 315.17amu
Principal moments of inertia in cm(-1)
A = 0.026901 B = 0.002731 C = 0.002650
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1040.600959 B =10248.424072 C =10562.048164
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.897 5.897
2 C 0.040 3.960
3 Si 1.063 2.937
4 H -0.281 1.281
5 H -0.280 1.280
6 H -0.285 1.285
7 C -0.593 4.593
8 H 0.062 0.938
9 C 0.022 3.978
10 C -0.568 4.568
11 S 2.618 3.382
12 O -0.972 6.972
13 O -0.946 6.946
14 N -1.134 6.134
15 C 0.114 3.886
16 C -0.126 4.126
17 C -0.113 4.113
18 C -0.092 4.092
19 C -0.122 4.122
20 C -0.127 4.127
21 C -0.126 4.126
22 C -0.122 4.122
23 C -0.190 4.190
24 C -0.165 4.165
25 H 0.275 0.725
26 H 0.126 0.874
27 H 0.098 0.902
28 H 0.411 0.589
29 H 0.059 0.941
30 H 0.076 0.924
31 H 0.071 0.929
32 H 0.068 0.932
33 H 0.065 0.935
34 H 0.067 0.933
35 H 0.071 0.929
36 H 0.069 0.931
37 H 0.064 0.936
38 H 0.064 0.936
39 H 0.064 0.936
40 H 0.061 0.939
41 H 0.064 0.936
42 H 0.061 0.939
43 H 0.065 0.935
44 H 0.089 0.911
45 H 0.075 0.925
46 H 0.069 0.931
47 H 0.089 0.911
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -3.743 -17.912 11.543 21.635
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.531 5.531
2 C -0.167 4.167
3 Si 0.890 3.110
4 H -0.206 1.206
5 H -0.206 1.206
6 H -0.211 1.211
7 C -0.630 4.630
8 H 0.080 0.920
9 C 0.020 3.980
10 C -0.700 4.700
11 S 2.714 3.286
12 O -0.962 6.962
13 O -0.936 6.936
14 N -0.891 5.891
15 C -0.013 4.013
16 C -0.165 4.165
17 C -0.151 4.151
18 C -0.111 4.111
19 C -0.160 4.160
20 C -0.164 4.164
21 C -0.163 4.163
22 C -0.160 4.160
23 C -0.227 4.227
24 C -0.204 4.204
25 H 0.086 0.914
26 H 0.144 0.856
27 H 0.117 0.883
28 H 0.244 0.756
29 H 0.077 0.923
30 H 0.095 0.905
31 H 0.090 0.910
32 H 0.087 0.913
33 H 0.084 0.916
34 H 0.086 0.914
35 H 0.089 0.911
36 H 0.087 0.913
37 H 0.083 0.917
38 H 0.083 0.917
39 H 0.082 0.918
40 H 0.080 0.920
41 H 0.083 0.917
42 H 0.080 0.920
43 H 0.084 0.916
44 H 0.107 0.893
45 H 0.094 0.906
46 H 0.088 0.912
47 H 0.107 0.893
Dipole moment (debyes) X Y Z Total
from point charges -3.014 -16.155 11.392 19.997
hybrid contribution -0.738 -1.603 0.116 1.769
sum -3.752 -17.758 11.508 21.491
Atomic orbital electron populations
1.70771 1.06865 1.31552 1.43876 1.25824 0.96350 1.02519 0.92046
0.83639 0.75230 0.75002 0.77131 1.20645 1.20636 1.21148 1.21391
0.94829 0.89651 1.57119 0.91983 1.18547 0.99548 0.95787 0.84137
1.30106 1.17506 1.07689 1.14717 1.04776 0.76218 0.73301 0.74329
1.93491 1.60557 1.62023 1.80168 1.93561 1.78394 1.45922 1.75758
1.56003 1.77409 1.28735 1.26979 1.21268 0.97854 0.83687 0.98448
1.21803 1.01777 0.96204 0.96709 1.21694 1.01062 0.95556 0.96818
1.21792 0.96468 0.96404 0.96421 1.22502 0.97319 0.96872 0.99274
1.22514 0.99534 0.96193 0.98183 1.22358 0.97954 0.97557 0.98450
1.22229 0.98416 0.94255 1.01087 1.23045 0.98196 0.95778 1.05720
1.22793 0.93262 1.02125 1.02231 0.91423 0.85589 0.88301 0.75585
0.92276 0.90522 0.90984 0.91293 0.91602 0.91419 0.91055 0.91252
0.91725 0.91737 0.91773 0.92017 0.91687 0.92025 0.91610 0.89272
0.90648 0.91230 0.89299
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.90 -25.94 13.57 55.43 0.75 -25.19 16
2 C 0.04 1.12 5.39 -17.82 -0.10 1.03 16
3 Si 1.06 25.46 29.91 -169.99 -5.08 20.38 16
4 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16
5 H -0.28 -6.64 7.11 56.52 0.40 -6.23 16
6 H -0.29 -6.47 7.11 56.52 0.40 -6.07 16
7 C -0.59 -16.55 7.88 -34.44 -0.27 -16.82 16
8 H 0.06 1.78 7.82 -52.49 -0.41 1.37 16
9 C 0.02 0.54 0.95 -155.65 -0.15 0.39 16
10 C -0.57 -11.80 5.87 37.16 0.22 -11.58 16
11 S 2.62 53.55 5.10 -107.50 -0.55 53.00 16
12 O -0.97 -21.71 17.50 -57.54 -1.01 -22.71 16
13 O -0.95 -23.09 17.57 -57.54 -1.01 -24.11 16
14 N -1.13 -16.85 5.89 -10.61 -0.06 -16.91 16
15 C 0.11 1.38 6.13 -4.04 -0.02 1.36 16
16 C -0.13 -1.19 5.20 -26.73 -0.14 -1.33 16
17 C -0.11 -0.92 4.34 -26.73 -0.12 -1.04 16
18 C -0.09 -0.69 2.93 -89.50 -0.26 -0.95 16
19 C -0.12 -0.92 5.50 -25.03 -0.14 -1.06 16
20 C -0.13 -0.86 6.91 -24.70 -0.17 -1.03 16
21 C -0.13 -0.84 6.83 -25.07 -0.17 -1.01 16
22 C -0.12 -0.85 6.46 -25.61 -0.17 -1.02 16
23 C -0.19 -4.15 9.95 -26.69 -0.27 -4.42 16
24 C -0.17 -3.69 8.74 -26.69 -0.23 -3.92 16
25 H 0.27 7.72 6.17 -40.82 -0.25 7.46 16
26 H 0.13 2.69 7.79 -51.92 -0.40 2.29 16
27 H 0.10 1.69 8.11 -51.93 -0.42 1.27 16
28 H 0.41 5.34 8.62 -34.47 -0.30 5.05 16
29 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16
30 H 0.08 0.97 7.69 -51.93 -0.40 0.57 16
31 H 0.07 0.68 7.48 -51.93 -0.39 0.29 16
32 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16
33 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16
34 H 0.07 0.56 8.02 -51.93 -0.42 0.14 16
35 H 0.07 0.54 8.14 -51.93 -0.42 0.11 16
36 H 0.07 0.55 7.77 -51.93 -0.40 0.15 16
37 H 0.06 0.48 8.14 -51.93 -0.42 0.05 16
38 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16
39 H 0.06 0.41 8.14 -51.92 -0.42 -0.01 16
40 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16
41 H 0.06 0.44 8.14 -51.93 -0.42 0.01 16
42 H 0.06 0.41 8.14 -51.93 -0.42 -0.02 16
43 H 0.07 0.45 7.67 -51.93 -0.40 0.06 16
44 H 0.09 1.94 8.14 -51.93 -0.42 1.52 16
45 H 0.08 1.47 8.14 -51.93 -0.42 1.05 16
46 H 0.07 1.39 8.14 -51.93 -0.42 0.97 16
47 H 0.09 2.10 8.14 -51.93 -0.42 1.68 16
LS Contribution 385.08 15.07 5.80 5.80
Total: -1.00 -33.57 385.08 -11.65 -45.21
By element:
Atomic # 1 Polarization: 14.42 SS G_CDS: -8.51 Total: 5.92 kcal
Atomic # 6 Polarization: -39.42 SS G_CDS: -1.98 Total: -41.40 kcal
Atomic # 7 Polarization: -42.79 SS G_CDS: 0.69 Total: -42.10 kcal
Atomic # 8 Polarization: -44.80 SS G_CDS: -2.02 Total: -46.82 kcal
Atomic # 14 Polarization: 25.46 SS G_CDS: -5.08 Total: 20.38 kcal
Atomic # 16 Polarization: 53.55 SS G_CDS: -0.55 Total: 53.00 kcal
Total LS contribution 5.80 Total: 5.80 kcal
Total: -33.57 -11.65 -45.21 kcal
The number of atoms in the molecule is 47
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000451027837.mol2 47
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -45.903 kcal
(2) G-P(sol) polarization free energy of solvation -33.566 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.470 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.647 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.213 kcal
(6) G-S(sol) free energy of system = (1) + (5) -91.117 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.81 seconds