Wall clock time and date at job start Tue Mar 31 2020 12:07:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86798 * 120.00121 * 2 1 4 4 H 1.48496 * 109.47369 * 359.97438 * 3 2 1 5 5 H 1.48506 * 109.47205 * 119.99948 * 3 2 1 6 6 H 1.48507 * 109.46959 * 239.99764 * 3 2 1 7 7 C 1.37875 * 119.99681 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00225 * 187.13997 * 7 2 1 9 9 C 1.50699 * 120.00017 * 7.14031 * 7 2 1 10 10 C 1.53001 * 115.55174 * 275.16466 * 9 7 2 11 11 S 1.81402 * 109.46891 * 299.72056 * 10 9 7 12 12 O 1.42104 * 110.54641 * 297.65190 * 11 10 9 13 13 O 1.42102 * 110.54262 * 74.40291 * 11 10 9 14 14 N 1.65598 * 104.44974 * 186.02560 * 11 10 9 15 15 C 1.46500 * 120.00011 * 65.00162 * 14 11 10 16 16 C 1.52995 * 109.47298 * 165.00228 * 15 14 11 17 17 C 1.53003 * 109.47426 * 180.02562 * 16 15 14 18 18 C 1.52995 * 109.47426 * 179.97438 * 17 16 15 19 19 C 1.54275 * 110.03104 * 292.90721 * 18 17 16 20 20 C 1.54965 * 104.15593 * 217.13460 * 19 18 17 21 21 C 1.54886 * 102.77988 * 37.89128 * 20 19 18 22 22 C 1.53876 * 110.03277 * 175.68843 * 18 17 16 23 23 C 1.53008 * 117.49997 * 129.49539 * 9 7 2 24 24 C 1.53003 * 117.49908 * 60.83576 * 9 7 2 25 25 H 0.97000 * 120.00212 * 175.44181 * 1 2 3 26 26 H 1.08999 * 109.47388 * 59.71929 * 10 9 7 27 27 H 1.08995 * 109.47269 * 179.72483 * 10 9 7 28 28 H 0.97001 * 119.99898 * 245.00359 * 14 11 10 29 29 H 1.09005 * 109.46818 * 284.99824 * 15 14 11 30 30 H 1.08996 * 109.47234 * 44.99957 * 15 14 11 31 31 H 1.09003 * 109.47187 * 299.99999 * 16 15 14 32 32 H 1.09006 * 109.47324 * 59.99660 * 16 15 14 33 33 H 1.09005 * 109.46716 * 299.99612 * 17 16 15 34 34 H 1.08996 * 109.47207 * 59.99667 * 17 16 15 35 35 H 1.09007 * 110.02137 * 54.29620 * 18 17 16 36 36 H 1.09000 * 110.48089 * 335.78328 * 19 18 17 37 37 H 1.09004 * 110.48330 * 98.42564 * 19 18 17 38 38 H 1.08993 * 110.72254 * 279.57292 * 20 19 18 39 39 H 1.09009 * 110.91859 * 156.29282 * 20 19 18 40 40 H 1.08994 * 110.48722 * 203.40377 * 21 20 19 41 41 H 1.08998 * 110.60428 * 80.80849 * 21 20 19 42 42 H 1.08999 * 110.03241 * 238.56480 * 22 18 17 43 43 H 1.08995 * 110.02915 * 0.02562 * 22 18 17 44 44 H 1.08998 * 117.49599 * 359.97438 * 23 9 7 45 45 H 1.08992 * 117.49997 * 145.02034 * 23 9 7 46 46 H 1.09005 * 117.49778 * 214.97916 * 24 9 7 47 47 H 1.08996 * 117.49811 * 359.97438 * 24 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 1.2843 2.7464 -0.0006 5 1 3.1030 1.6964 1.2125 6 1 3.1030 1.6963 -1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0782 -1.1978 0.1168 9 6 1.2597 -2.4941 -0.1611 10 6 0.6783 -3.0859 1.1245 11 16 2.0208 -3.4165 2.2989 12 8 2.9219 -4.3788 1.7683 13 8 2.4954 -2.2040 2.8680 14 7 1.2840 -4.1983 3.5592 15 6 0.6851 -5.5191 3.3523 16 6 0.4142 -6.1744 4.7081 17 6 -0.2107 -7.5541 4.4920 18 6 -0.4810 -8.2096 5.8478 19 6 0.8522 -8.5297 6.5551 20 6 0.5891 -9.8815 7.2657 21 6 -0.2907 -10.6411 6.2420 22 6 -1.2076 -9.5513 5.6490 23 6 1.7679 -3.4723 -1.2223 24 6 0.4676 -2.6985 -1.4541 25 1 -0.4850 -0.8374 -0.0668 26 1 -0.0238 -2.3782 1.5652 27 1 0.1598 -4.0165 0.8941 28 1 1.2490 -3.7815 4.4345 29 1 -0.2525 -5.4115 2.8070 30 1 1.3701 -6.1427 2.7778 31 1 1.3519 -6.2820 5.2535 32 1 -0.2707 -5.5508 5.2827 33 1 -1.1483 -7.4469 3.9465 34 1 0.4746 -8.1775 3.9177 35 1 -1.0836 -7.5471 6.4691 36 1 1.6558 -8.6321 5.8259 37 1 1.0930 -7.7554 7.2836 38 1 0.0493 -9.7275 8.1999 39 1 1.5226 -10.4155 7.4440 40 1 -0.8830 -11.4072 6.7424 41 1 0.3264 -11.0864 5.4617 42 1 -2.1625 -9.5403 6.1746 43 1 -1.3673 -9.7357 4.5867 44 1 2.6406 -3.1753 -1.8037 45 1 1.6877 -4.5373 -1.0047 46 1 -0.4675 -3.2549 -1.3889 47 1 0.4848 -1.8925 -2.1876 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000451027837.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:07:39 Heat of formation + Delta-G solvation = -112.036258 kcal Electronic energy + Delta-G solvation = -24701.612437 eV Core-core repulsion = 21202.589890 eV Total energy + Delta-G solvation = -3499.022547 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 315.166 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -39.48713 -38.89651 -38.03735 -37.05619 -36.80020 -34.05885 -33.53624 -29.99054 -29.65524 -29.22802 -27.06139 -25.28732 -23.16200 -22.71839 -21.79032 -21.39349 -20.49743 -20.18900 -18.80573 -18.41935 -17.39163 -17.11621 -16.69999 -16.18263 -16.05410 -15.78851 -15.63921 -15.48726 -15.01862 -14.58276 -14.43383 -14.16979 -13.92663 -13.66783 -13.35798 -13.10974 -13.00260 -12.96035 -12.83507 -12.68309 -12.59864 -12.36495 -12.12851 -11.98922 -11.94164 -11.92512 -11.82555 -11.54698 -11.46674 -11.41890 -11.29035 -11.12128 -10.60701 -10.56254 -10.51065 -10.08483 -8.63361 -6.41255 -0.57956 1.51421 1.58413 1.77617 1.99637 2.53286 2.89104 3.11476 3.15798 3.37835 3.68751 3.75844 3.79918 3.82260 4.06727 4.10541 4.13335 4.25275 4.35444 4.39074 4.47984 4.55593 4.61236 4.62920 4.71701 4.72867 4.81711 4.82198 4.84022 4.90471 4.99007 5.00661 5.07029 5.10690 5.15816 5.24349 5.29333 5.32684 5.38225 5.41468 5.47620 5.52261 5.63064 6.00371 6.11496 6.15020 6.63547 7.41595 8.78855 Molecular weight = 315.17amu Principal moments of inertia in cm(-1) A = 0.026901 B = 0.002731 C = 0.002650 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1040.600959 B =10248.424072 C =10562.048164 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.917 5.917 2 C -0.003 4.003 3 Si 1.092 2.908 4 H -0.275 1.275 5 H -0.281 1.281 6 H -0.268 1.268 7 C -0.607 4.607 8 H 0.039 0.961 9 C -0.015 4.015 10 C -0.563 4.563 11 S 2.630 3.370 12 O -0.995 6.995 13 O -0.995 6.995 14 N -1.118 6.118 15 C 0.102 3.898 16 C -0.120 4.120 17 C -0.110 4.110 18 C -0.091 4.091 19 C -0.125 4.125 20 C -0.127 4.127 21 C -0.126 4.126 22 C -0.122 4.122 23 C -0.179 4.179 24 C -0.157 4.157 25 H 0.272 0.728 26 H 0.117 0.883 27 H 0.140 0.860 28 H 0.421 0.579 29 H 0.079 0.921 30 H 0.072 0.928 31 H 0.069 0.931 32 H 0.078 0.922 33 H 0.073 0.927 34 H 0.065 0.935 35 H 0.073 0.927 36 H 0.062 0.938 37 H 0.063 0.937 38 H 0.067 0.933 39 H 0.065 0.935 40 H 0.068 0.932 41 H 0.062 0.938 42 H 0.065 0.935 43 H 0.066 0.934 44 H 0.081 0.919 45 H 0.104 0.896 46 H 0.098 0.902 47 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.836 -19.498 11.990 23.395 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.552 5.552 2 C -0.205 4.205 3 Si 0.915 3.085 4 H -0.200 1.200 5 H -0.207 1.207 6 H -0.193 1.193 7 C -0.644 4.644 8 H 0.058 0.942 9 C -0.017 4.017 10 C -0.696 4.696 11 S 2.727 3.273 12 O -0.984 6.984 13 O -0.985 6.985 14 N -0.880 5.880 15 C -0.024 4.024 16 C -0.159 4.159 17 C -0.148 4.148 18 C -0.110 4.110 19 C -0.163 4.163 20 C -0.165 4.165 21 C -0.164 4.164 22 C -0.160 4.160 23 C -0.217 4.217 24 C -0.196 4.196 25 H 0.083 0.917 26 H 0.136 0.864 27 H 0.158 0.842 28 H 0.257 0.743 29 H 0.097 0.903 30 H 0.090 0.910 31 H 0.088 0.912 32 H 0.097 0.903 33 H 0.092 0.908 34 H 0.084 0.916 35 H 0.091 0.909 36 H 0.081 0.919 37 H 0.082 0.918 38 H 0.086 0.914 39 H 0.084 0.916 40 H 0.087 0.913 41 H 0.081 0.919 42 H 0.084 0.916 43 H 0.085 0.915 44 H 0.100 0.900 45 H 0.122 0.878 46 H 0.116 0.884 47 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -4.099 -17.752 11.834 21.725 hybrid contribution -0.395 -1.214 0.000 1.277 sum -4.495 -18.966 11.834 22.802 Atomic orbital electron populations 1.70843 1.07225 1.31478 1.45651 1.26858 0.96686 1.05247 0.91730 0.83266 0.74798 0.72630 0.77795 1.19964 1.20659 1.19278 1.21604 0.94145 0.91876 1.56775 0.94238 1.18655 1.01219 0.95585 0.86216 1.29968 1.17386 1.09185 1.13028 1.04072 0.76236 0.72348 0.74659 1.93456 1.61802 1.62191 1.80999 1.93492 1.79820 1.48439 1.76781 1.55515 1.77148 1.29461 1.25857 1.21629 0.98357 0.82019 1.00368 1.21778 1.02111 0.96868 0.95170 1.21675 1.01236 0.94610 0.97285 1.21779 0.96445 0.96704 0.96024 1.22516 0.97213 0.97310 0.99212 1.22525 0.99762 0.95850 0.98315 1.22373 0.97957 0.97676 0.98398 1.22234 0.98576 0.93940 1.01256 1.23117 0.97703 0.96900 1.03936 1.22761 0.94719 1.01797 1.00327 0.91750 0.86419 0.84196 0.74314 0.90271 0.90976 0.91215 0.90298 0.90813 0.91601 0.90871 0.91935 0.91785 0.91403 0.91586 0.91332 0.91888 0.91573 0.91516 0.90026 0.87772 0.88359 0.91405 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -53.18 13.57 21.45 0.29 -52.89 16 2 C 0.00 -0.14 5.39 84.65 0.46 0.31 16 3 Si 1.09 51.58 29.91 68.60 2.05 53.63 16 4 H -0.27 -12.58 7.11 99.48 0.71 -11.88 16 5 H -0.28 -13.14 7.11 99.48 0.71 -12.43 16 6 H -0.27 -11.73 7.11 99.48 0.71 -11.03 16 7 C -0.61 -34.27 7.88 25.60 0.20 -34.07 16 8 H 0.04 2.34 7.82 -2.91 -0.02 2.31 16 9 C -0.01 -0.70 0.95 -52.92 -0.05 -0.75 16 10 C -0.56 -22.54 5.87 71.98 0.42 -22.12 16 11 S 2.63 105.92 5.10 -56.49 -0.29 105.63 16 12 O -0.99 -43.63 17.50 -127.65 -2.23 -45.86 16 13 O -1.00 -49.31 17.57 -127.65 -2.24 -51.56 16 14 N -1.12 -31.40 5.89 -187.50 -1.10 -32.51 16 15 C 0.10 2.21 6.13 86.38 0.53 2.74 16 16 C -0.12 -1.98 5.20 30.59 0.16 -1.82 16 17 C -0.11 -1.52 4.34 30.59 0.13 -1.39 16 18 C -0.09 -1.17 2.93 -10.07 -0.03 -1.20 16 19 C -0.12 -1.69 5.50 31.70 0.17 -1.52 16 20 C -0.13 -1.54 6.91 31.91 0.22 -1.32 16 21 C -0.13 -1.47 6.83 31.67 0.22 -1.25 16 22 C -0.12 -1.46 6.46 31.32 0.20 -1.25 16 23 C -0.18 -7.54 9.95 30.62 0.30 -7.24 16 24 C -0.16 -6.79 8.74 30.62 0.27 -6.52 16 25 H 0.27 15.27 6.17 -92.71 -0.57 14.70 16 26 H 0.12 4.93 7.79 -2.39 -0.02 4.91 16 27 H 0.14 4.30 8.11 -2.39 -0.02 4.28 16 28 H 0.42 10.34 8.62 -96.75 -0.83 9.51 16 29 H 0.08 1.43 8.14 -2.38 -0.02 1.41 16 30 H 0.07 1.66 7.69 -2.39 -0.02 1.64 16 31 H 0.07 1.19 7.48 -2.39 -0.02 1.17 16 32 H 0.08 1.16 8.14 -2.38 -0.02 1.14 16 33 H 0.07 0.92 8.14 -2.38 -0.02 0.90 16 34 H 0.07 0.95 8.02 -2.39 -0.02 0.93 16 35 H 0.07 0.93 8.14 -2.38 -0.02 0.91 16 36 H 0.06 0.93 7.77 -2.39 -0.02 0.91 16 37 H 0.06 0.86 8.14 -2.38 -0.02 0.84 16 38 H 0.07 0.77 8.14 -2.39 -0.02 0.75 16 39 H 0.07 0.76 8.14 -2.38 -0.02 0.74 16 40 H 0.07 0.70 8.14 -2.39 -0.02 0.68 16 41 H 0.06 0.75 8.14 -2.39 -0.02 0.73 16 42 H 0.07 0.73 8.14 -2.39 -0.02 0.71 16 43 H 0.07 0.78 7.67 -2.39 -0.02 0.76 16 44 H 0.08 3.51 8.14 -2.39 -0.02 3.49 16 45 H 0.10 3.75 8.14 -2.39 -0.02 3.73 16 46 H 0.10 3.63 8.14 -2.38 -0.02 3.61 16 47 H 0.07 3.19 8.14 -2.39 -0.02 3.17 16 Total: -1.00 -72.32 385.08 -0.03 -72.34 By element: Atomic # 1 Polarization: 28.31 SS G_CDS: 0.29 Total: 28.60 kcal Atomic # 6 Polarization: -80.60 SS G_CDS: 3.21 Total: -77.40 kcal Atomic # 7 Polarization: -84.58 SS G_CDS: -0.81 Total: -85.39 kcal Atomic # 8 Polarization: -92.94 SS G_CDS: -4.48 Total: -97.42 kcal Atomic # 14 Polarization: 51.58 SS G_CDS: 2.05 Total: 53.63 kcal Atomic # 16 Polarization: 105.92 SS G_CDS: -0.29 Total: 105.63 kcal Total: -72.32 -0.03 -72.34 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000451027837.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.692 kcal (2) G-P(sol) polarization free energy of solvation -72.318 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -112.010 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.027 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.345 kcal (6) G-S(sol) free energy of system = (1) + (5) -112.036 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds