Wall clock time and date at job start Tue Mar 31 2020 11:29:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.42899 * 114.00077 * 2 1 4 4 C 1.53001 * 109.46934 * 179.97438 * 3 2 1 5 5 N 1.46504 * 109.46724 * 65.00541 * 4 3 2 6 6 C 1.37097 * 119.99665 * 264.22769 * 5 4 3 7 7 H 1.08003 * 119.99732 * 144.65893 * 6 5 4 8 8 C 1.38950 * 120.00319 * 324.66194 * 6 5 4 9 9 N 1.31412 * 119.99993 * 339.42258 * 8 6 5 10 10 Si 1.86801 * 120.00148 * 159.41427 * 8 6 5 11 11 H 1.48500 * 109.46884 * 60.00352 * 10 8 6 12 12 H 1.48492 * 109.47321 * 179.97438 * 10 8 6 13 13 H 1.48501 * 109.47512 * 300.00334 * 10 8 6 14 14 C 1.34777 * 120.00077 * 84.23522 * 5 4 3 15 15 O 1.21289 * 120.00229 * 359.97438 * 14 5 4 16 16 C 1.50704 * 119.99592 * 179.97438 * 14 5 4 17 17 H 1.09001 * 115.58354 * 28.82737 * 16 14 5 18 18 C 1.53119 * 117.51137 * 174.60395 * 16 14 5 19 19 C 1.52367 * 59.90587 * 107.42141 * 18 16 14 20 20 C 1.53784 * 121.20548 * 249.50332 * 19 18 16 21 21 C 1.54481 * 102.20649 * 189.98598 * 20 19 18 22 22 C 1.51426 * 105.23376 * 25.73356 * 21 20 19 23 23 C 1.38467 * 130.36436 * 163.13847 * 22 21 20 24 24 C 1.38088 * 120.26663 * 179.97438 * 23 22 21 25 25 C 1.38256 * 119.91599 * 359.97438 * 24 23 22 26 26 C 1.38086 * 119.93606 * 0.02562 * 25 24 23 27 27 C 1.38384 * 109.79786 * 343.14112 * 22 21 20 28 28 H 1.09000 * 109.47065 * 59.99843 * 1 2 3 29 29 H 1.09003 * 109.47091 * 179.97438 * 1 2 3 30 30 H 1.08997 * 109.47093 * 299.99668 * 1 2 3 31 31 H 1.09001 * 109.46842 * 60.00271 * 3 2 1 32 32 H 1.08997 * 109.47380 * 300.00250 * 3 2 1 33 33 H 1.08992 * 109.47153 * 305.00322 * 4 3 2 34 34 H 1.09003 * 109.46877 * 185.00001 * 4 3 2 35 35 H 0.97001 * 120.00214 * 180.02562 * 9 8 6 36 36 H 1.08999 * 117.51417 * 214.89385 * 18 16 14 37 37 H 1.09001 * 117.51580 * 359.95214 * 18 16 14 38 38 H 1.09006 * 110.85409 * 308.16408 * 20 19 18 39 39 H 1.08999 * 110.85725 * 71.80935 * 20 19 18 40 40 H 1.08999 * 110.28803 * 144.67381 * 21 20 19 41 41 H 1.08997 * 110.29077 * 266.79041 * 21 20 19 42 42 H 1.08000 * 119.86297 * 359.95541 * 23 22 21 43 43 H 1.08004 * 120.04226 * 180.02562 * 24 23 22 44 44 H 1.07998 * 120.03211 * 180.02562 * 25 24 23 45 45 H 1.07998 * 119.86037 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5355 1.1846 0.0006 5 7 3.9766 0.5639 -1.2510 6 6 4.2118 -0.7858 -1.3011 7 1 3.9783 -1.3416 -2.1972 8 6 4.7503 -1.4387 -0.1991 9 7 5.4010 -0.7558 0.7159 10 14 4.5492 -3.2870 -0.0182 11 1 5.1742 -3.9689 -1.1799 12 1 5.2101 -3.7366 1.2333 13 1 3.1042 -3.6248 0.0356 14 6 4.1514 1.3199 -2.3530 15 8 3.9431 2.5139 -2.3087 16 6 4.6058 0.6815 -3.6403 17 1 4.3167 -0.3607 -3.7765 18 6 4.6644 1.5681 -4.8873 19 6 5.9522 1.1199 -4.2073 20 6 6.8446 2.1198 -3.4531 21 6 8.1137 1.2827 -3.1792 22 6 8.1404 0.2320 -4.2692 23 6 9.1738 -0.5779 -4.7091 24 6 8.9640 -1.4785 -5.7346 25 6 7.7174 -1.5732 -6.3249 26 6 6.6851 -0.7667 -5.8883 27 6 6.8928 0.1384 -4.8606 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5138 0.8900 31 1 1.6887 1.8463 0.8900 32 1 1.6887 1.8464 -0.8899 33 1 3.8508 0.5684 0.8426 34 1 3.9785 2.1765 0.0902 35 1 5.7773 -1.2116 1.4850 36 1 4.4139 1.1091 -5.8437 37 1 4.3737 2.6127 -4.7766 38 1 7.0759 2.9820 -4.0787 39 1 6.3759 2.4309 -2.5195 40 1 9.0017 1.9120 -3.2389 41 1 8.0502 0.8095 -2.1994 42 1 10.1478 -0.5047 -4.2483 43 1 9.7725 -2.1088 -6.0745 44 1 7.5512 -2.2772 -7.1269 45 1 5.7117 -0.8419 -6.3500 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000457202672.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:29:42 Heat of formation + Delta-G solvation = -20.738722 kcal Electronic energy + Delta-G solvation = -27172.714375 eV Core-core repulsion = 23542.206835 eV Total energy + Delta-G solvation = -3630.507540 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 315.162 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -40.25268 -38.62097 -37.14629 -36.10314 -34.59851 -33.31697 -31.52314 -30.37896 -29.27568 -28.50738 -25.88052 -24.93179 -24.51353 -23.38290 -22.36702 -21.13011 -20.67426 -19.38126 -18.68805 -16.73697 -16.33719 -15.90235 -15.40614 -15.29627 -15.00139 -14.74805 -14.51907 -14.36714 -14.31050 -14.03466 -13.54645 -13.29467 -12.80701 -12.74618 -12.26774 -11.98118 -11.82503 -11.71408 -11.43209 -11.32809 -11.17394 -11.11132 -10.97169 -10.94535 -10.67960 -10.53775 -10.44603 -10.33943 -10.04793 -9.80258 -9.61304 -9.10780 -8.93733 -8.54468 -8.42592 -7.98145 -7.46932 -6.29078 -3.93163 1.60910 1.67069 3.21077 3.28119 3.33132 3.62351 4.08635 4.16532 4.46450 4.56699 4.71346 4.79623 4.99338 5.09825 5.21772 5.27151 5.41505 5.44171 5.51398 5.66688 5.68312 5.73752 5.78853 5.91062 5.99155 5.99797 6.04662 6.05152 6.09489 6.17111 6.31808 6.33094 6.37957 6.41982 6.47309 6.59548 6.62499 6.67830 6.74429 6.80560 6.87326 7.04153 7.28071 7.30898 7.53355 7.83171 8.01784 8.42366 9.17201 9.55880 9.96307 10.74113 Molecular weight = 315.16amu Principal moments of inertia in cm(-1) A = 0.013256 B = 0.005147 C = 0.004398 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2111.706847 B = 5439.171681 C = 6364.427219 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.365 6.365 3 C 0.052 3.948 4 C 0.114 3.886 5 N -0.420 5.420 6 C -0.318 4.318 7 H 0.086 0.914 8 C 0.050 3.950 9 N -0.865 5.865 10 Si 0.911 3.089 11 H -0.275 1.275 12 H -0.286 1.286 13 H -0.271 1.271 14 C 0.496 3.504 15 O -0.609 6.609 16 C -0.124 4.124 17 H 0.117 0.883 18 C -0.148 4.148 19 C -0.066 4.066 20 C -0.081 4.081 21 C -0.081 4.081 22 C -0.082 4.082 23 C -0.112 4.112 24 C -0.126 4.126 25 C -0.126 4.126 26 C -0.106 4.106 27 C -0.047 4.047 28 H 0.031 0.969 29 H 0.077 0.923 30 H 0.030 0.970 31 H 0.038 0.962 32 H 0.041 0.959 33 H 0.117 0.883 34 H 0.068 0.932 35 H 0.268 0.732 36 H 0.092 0.908 37 H 0.106 0.894 38 H 0.069 0.931 39 H 0.087 0.913 40 H 0.069 0.931 41 H 0.088 0.912 42 H 0.116 0.884 43 H 0.118 0.882 44 H 0.119 0.881 45 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.688 0.250 -7.429 7.622 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.283 6.283 3 C -0.026 4.026 4 C -0.010 4.010 5 N -0.136 5.136 6 C -0.446 4.446 7 H 0.103 0.897 8 C -0.155 4.155 9 N -0.502 5.502 10 Si 0.737 3.263 11 H -0.200 1.200 12 H -0.211 1.211 13 H -0.197 1.197 14 C 0.285 3.715 15 O -0.496 6.496 16 C -0.145 4.145 17 H 0.135 0.865 18 C -0.185 4.185 19 C -0.067 4.067 20 C -0.118 4.118 21 C -0.117 4.117 22 C -0.082 4.082 23 C -0.130 4.130 24 C -0.144 4.144 25 C -0.144 4.144 26 C -0.124 4.124 27 C -0.047 4.047 28 H 0.050 0.950 29 H 0.095 0.905 30 H 0.048 0.952 31 H 0.056 0.944 32 H 0.059 0.941 33 H 0.135 0.865 34 H 0.086 0.914 35 H 0.078 0.922 36 H 0.110 0.890 37 H 0.124 0.876 38 H 0.088 0.912 39 H 0.106 0.894 40 H 0.088 0.912 41 H 0.106 0.894 42 H 0.134 0.866 43 H 0.136 0.864 44 H 0.137 0.863 45 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges 1.801 0.606 -7.161 7.409 hybrid contribution -0.405 -1.055 0.206 1.149 sum 1.396 -0.449 -6.955 7.108 Atomic orbital electron populations 1.22641 0.83462 1.01699 0.98814 1.88138 1.17347 1.27767 1.95035 1.23043 0.96627 0.84288 0.98635 1.21489 0.89085 0.99014 0.91366 1.43245 1.55553 1.07439 1.07342 1.19207 1.41189 0.82108 1.02114 0.89671 1.25171 0.94041 0.99640 0.96629 1.69874 1.31365 1.36823 1.12169 0.86260 0.78847 0.83507 0.77643 1.20007 1.21112 1.19664 1.19344 0.81042 0.85733 0.85372 1.90501 1.58012 1.15270 1.85835 1.22135 0.98689 1.00151 0.93526 0.86542 1.22905 0.99182 1.01141 0.95322 1.20164 0.87807 0.97482 1.01221 1.21766 0.93691 0.95756 1.00635 1.21091 0.98178 0.94985 0.97492 1.20645 0.93626 0.97310 0.96665 1.20556 0.98365 0.96446 0.97620 1.20931 0.97197 0.99035 0.97255 1.20914 0.93252 0.99637 1.00593 1.20570 0.99022 0.95853 0.96990 1.19780 0.94215 0.95757 0.94934 0.95003 0.90469 0.95176 0.94352 0.94054 0.86507 0.91363 0.92188 0.88993 0.87594 0.91226 0.89416 0.91232 0.89358 0.86572 0.86373 0.86328 0.86586 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.50 11.01 101.05 1.11 1.62 16 2 O -0.36 -7.86 10.45 -35.23 -0.37 -8.23 16 3 C 0.05 1.09 6.24 37.16 0.23 1.32 16 4 C 0.11 2.72 5.28 -4.04 -0.02 2.70 16 5 N -0.42 -10.51 2.50 -114.81 -0.29 -10.79 16 6 C -0.32 -8.18 8.50 -14.93 -0.13 -8.31 16 7 H 0.09 2.16 6.46 -52.48 -0.34 1.82 16 8 C 0.05 1.29 4.95 -17.47 -0.09 1.20 16 9 N -0.86 -22.84 11.34 55.50 0.63 -22.21 16 10 Si 0.91 20.40 29.60 -169.99 -5.03 15.37 16 11 H -0.27 -6.10 7.11 56.52 0.40 -5.69 16 12 H -0.29 -6.35 7.11 56.52 0.40 -5.95 16 13 H -0.27 -6.11 7.11 56.52 0.40 -5.71 16 14 C 0.50 11.92 6.23 -10.98 -0.07 11.85 16 15 O -0.61 -15.42 15.28 5.55 0.08 -15.34 16 16 C -0.12 -2.58 5.27 -91.95 -0.48 -3.06 16 17 H 0.12 2.44 6.58 -51.93 -0.34 2.10 16 18 C -0.15 -2.60 9.74 -26.99 -0.26 -2.86 16 19 C -0.07 -1.23 2.34 -155.76 -0.36 -1.59 16 20 C -0.08 -1.48 6.65 -25.55 -0.17 -1.65 16 21 C -0.08 -1.36 6.77 -26.75 -0.18 -1.54 16 22 C -0.08 -1.40 6.14 -104.13 -0.64 -2.04 16 23 C -0.11 -1.65 10.03 -39.55 -0.40 -2.05 16 24 C -0.13 -1.70 10.05 -39.63 -0.40 -2.09 16 25 C -0.13 -1.72 10.05 -39.63 -0.40 -2.12 16 26 C -0.11 -1.64 9.98 -39.54 -0.39 -2.03 16 27 C -0.05 -0.82 5.93 -104.41 -0.62 -1.44 16 28 H 0.03 0.48 8.14 -51.93 -0.42 0.06 16 29 H 0.08 1.12 8.14 -51.93 -0.42 0.70 16 30 H 0.03 0.42 8.14 -51.93 -0.42 0.00 16 31 H 0.04 0.70 8.14 -51.93 -0.42 0.28 16 32 H 0.04 0.89 8.14 -51.93 -0.42 0.47 16 33 H 0.12 2.99 5.40 -51.93 -0.28 2.71 16 34 H 0.07 1.63 7.60 -51.93 -0.39 1.23 16 35 H 0.27 6.76 8.31 -40.82 -0.34 6.42 16 36 H 0.09 1.37 8.13 -51.93 -0.42 0.94 16 37 H 0.11 1.92 7.68 -51.93 -0.40 1.52 16 38 H 0.07 1.13 8.14 -51.93 -0.42 0.71 16 39 H 0.09 1.85 6.40 -51.93 -0.33 1.51 16 40 H 0.07 0.99 8.14 -51.93 -0.42 0.57 16 41 H 0.09 1.66 8.14 -51.93 -0.42 1.24 16 42 H 0.12 1.46 8.06 -52.49 -0.42 1.04 16 43 H 0.12 1.25 8.06 -52.48 -0.42 0.83 16 44 H 0.12 1.29 8.06 -52.49 -0.42 0.87 16 45 H 0.12 1.59 8.05 -52.49 -0.42 1.17 16 LS Contribution 369.55 15.07 5.57 5.57 Total: -1.00 -29.49 369.55 -9.39 -38.88 By element: Atomic # 1 Polarization: 15.55 SS G_CDS: -6.72 Total: 8.83 kcal Atomic # 6 Polarization: -8.82 SS G_CDS: -3.27 Total: -12.09 kcal Atomic # 7 Polarization: -33.34 SS G_CDS: 0.34 Total: -33.00 kcal Atomic # 8 Polarization: -23.29 SS G_CDS: -0.28 Total: -23.57 kcal Atomic # 14 Polarization: 20.40 SS G_CDS: -5.03 Total: 15.37 kcal Total LS contribution 5.57 Total: 5.57 kcal Total: -29.49 -9.39 -38.88 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000457202672.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.144 kcal (2) G-P(sol) polarization free energy of solvation -29.493 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.349 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.390 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.882 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.739 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds