Wall clock time and date at job start Tue Mar 31 2020 11:29:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.42899 * 114.00077 * 2 1 4 4 C 1.53001 * 109.46934 * 179.97438 * 3 2 1 5 5 N 1.46504 * 109.46724 * 65.00541 * 4 3 2 6 6 C 1.37097 * 119.99665 * 264.22769 * 5 4 3 7 7 H 1.08003 * 119.99732 * 144.65893 * 6 5 4 8 8 C 1.38950 * 120.00319 * 324.66194 * 6 5 4 9 9 N 1.31412 * 119.99993 * 339.42258 * 8 6 5 10 10 Si 1.86801 * 120.00148 * 159.41427 * 8 6 5 11 11 H 1.48500 * 109.46884 * 60.00352 * 10 8 6 12 12 H 1.48492 * 109.47321 * 179.97438 * 10 8 6 13 13 H 1.48501 * 109.47512 * 300.00334 * 10 8 6 14 14 C 1.34777 * 120.00077 * 84.23522 * 5 4 3 15 15 O 1.21289 * 120.00229 * 359.97438 * 14 5 4 16 16 C 1.50704 * 119.99592 * 179.97438 * 14 5 4 17 17 H 1.09001 * 115.58354 * 28.82737 * 16 14 5 18 18 C 1.53119 * 117.51137 * 174.60395 * 16 14 5 19 19 C 1.52367 * 59.90587 * 107.42141 * 18 16 14 20 20 C 1.53784 * 121.20548 * 249.50332 * 19 18 16 21 21 C 1.54481 * 102.20649 * 189.98598 * 20 19 18 22 22 C 1.51426 * 105.23376 * 25.73356 * 21 20 19 23 23 C 1.38467 * 130.36436 * 163.13847 * 22 21 20 24 24 C 1.38088 * 120.26663 * 179.97438 * 23 22 21 25 25 C 1.38256 * 119.91599 * 359.97438 * 24 23 22 26 26 C 1.38086 * 119.93606 * 0.02562 * 25 24 23 27 27 C 1.38384 * 109.79786 * 343.14112 * 22 21 20 28 28 H 1.09000 * 109.47065 * 59.99843 * 1 2 3 29 29 H 1.09003 * 109.47091 * 179.97438 * 1 2 3 30 30 H 1.08997 * 109.47093 * 299.99668 * 1 2 3 31 31 H 1.09001 * 109.46842 * 60.00271 * 3 2 1 32 32 H 1.08997 * 109.47380 * 300.00250 * 3 2 1 33 33 H 1.08992 * 109.47153 * 305.00322 * 4 3 2 34 34 H 1.09003 * 109.46877 * 185.00001 * 4 3 2 35 35 H 0.97001 * 120.00214 * 180.02562 * 9 8 6 36 36 H 1.08999 * 117.51417 * 214.89385 * 18 16 14 37 37 H 1.09001 * 117.51580 * 359.95214 * 18 16 14 38 38 H 1.09006 * 110.85409 * 308.16408 * 20 19 18 39 39 H 1.08999 * 110.85725 * 71.80935 * 20 19 18 40 40 H 1.08999 * 110.28803 * 144.67381 * 21 20 19 41 41 H 1.08997 * 110.29077 * 266.79041 * 21 20 19 42 42 H 1.08000 * 119.86297 * 359.95541 * 23 22 21 43 43 H 1.08004 * 120.04226 * 180.02562 * 24 23 22 44 44 H 1.07998 * 120.03211 * 180.02562 * 25 24 23 45 45 H 1.07998 * 119.86037 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5355 1.1846 0.0006 5 7 3.9766 0.5639 -1.2510 6 6 4.2118 -0.7858 -1.3011 7 1 3.9783 -1.3416 -2.1972 8 6 4.7503 -1.4387 -0.1991 9 7 5.4010 -0.7558 0.7159 10 14 4.5492 -3.2870 -0.0182 11 1 5.1742 -3.9689 -1.1799 12 1 5.2101 -3.7366 1.2333 13 1 3.1042 -3.6248 0.0356 14 6 4.1514 1.3199 -2.3530 15 8 3.9431 2.5139 -2.3087 16 6 4.6058 0.6815 -3.6403 17 1 4.3167 -0.3607 -3.7765 18 6 4.6644 1.5681 -4.8873 19 6 5.9522 1.1199 -4.2073 20 6 6.8446 2.1198 -3.4531 21 6 8.1137 1.2827 -3.1792 22 6 8.1404 0.2320 -4.2692 23 6 9.1738 -0.5779 -4.7091 24 6 8.9640 -1.4785 -5.7346 25 6 7.7174 -1.5732 -6.3249 26 6 6.6851 -0.7667 -5.8883 27 6 6.8928 0.1384 -4.8606 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5138 0.8900 31 1 1.6887 1.8463 0.8900 32 1 1.6887 1.8464 -0.8899 33 1 3.8508 0.5684 0.8426 34 1 3.9785 2.1765 0.0902 35 1 5.7773 -1.2116 1.4850 36 1 4.4139 1.1091 -5.8437 37 1 4.3737 2.6127 -4.7766 38 1 7.0759 2.9820 -4.0787 39 1 6.3759 2.4309 -2.5195 40 1 9.0017 1.9120 -3.2389 41 1 8.0502 0.8095 -2.1994 42 1 10.1478 -0.5047 -4.2483 43 1 9.7725 -2.1088 -6.0745 44 1 7.5512 -2.2772 -7.1269 45 1 5.7117 -0.8419 -6.3500 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000457202672.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:29:41 Heat of formation + Delta-G solvation = -35.345669 kcal Electronic energy + Delta-G solvation = -27173.347779 eV Core-core repulsion = 23542.206835 eV Total energy + Delta-G solvation = -3631.140945 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 315.162 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -41.66004 -40.27629 -38.70375 -37.57966 -36.47663 -34.68074 -33.48308 -31.59795 -30.97044 -29.74918 -27.33331 -26.77845 -25.99972 -24.98189 -23.57717 -22.83988 -21.88507 -20.98005 -20.36184 -18.43145 -18.08683 -17.33777 -17.02603 -16.93769 -16.36603 -16.15918 -16.08544 -15.95566 -15.76804 -15.64255 -14.93067 -14.86223 -14.40150 -14.00272 -13.66944 -13.49400 -13.41073 -13.17725 -13.06497 -13.00068 -12.86703 -12.57701 -12.52742 -12.42084 -12.34011 -12.12387 -11.93749 -11.80642 -11.66088 -11.21493 -11.13068 -10.96937 -10.56356 -10.33330 -9.64304 -9.44903 -9.23475 -8.24671 -5.94115 0.43288 0.53324 1.41110 1.46902 1.54230 1.91340 2.32863 2.76786 2.83370 2.99275 3.15839 3.25734 3.53088 3.59753 3.86646 3.97976 4.06249 4.22824 4.23998 4.26677 4.31243 4.46909 4.48954 4.52014 4.52892 4.59492 4.61803 4.66739 4.70174 4.74450 4.79462 4.85091 4.92072 4.95484 5.10076 5.13597 5.18507 5.24523 5.34249 5.36715 5.52941 5.62125 5.65137 5.84461 6.01047 6.17129 6.39501 6.44761 7.19586 7.63955 8.04053 8.78688 Molecular weight = 315.16amu Principal moments of inertia in cm(-1) A = 0.013256 B = 0.005147 C = 0.004398 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2111.706847 B = 5439.171681 C = 6364.427219 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.398 6.398 3 C 0.064 3.936 4 C 0.112 3.888 5 N -0.432 5.432 6 C -0.327 4.327 7 H 0.084 0.916 8 C 0.012 3.988 9 N -0.892 5.892 10 Si 0.969 3.031 11 H -0.268 1.268 12 H -0.282 1.282 13 H -0.271 1.271 14 C 0.489 3.511 15 O -0.630 6.630 16 C -0.152 4.152 17 H 0.111 0.889 18 C -0.125 4.125 19 C -0.062 4.062 20 C -0.083 4.083 21 C -0.075 4.075 22 C -0.105 4.105 23 C -0.119 4.119 24 C -0.121 4.121 25 C -0.123 4.123 26 C -0.115 4.115 27 C -0.072 4.072 28 H 0.039 0.961 29 H 0.093 0.907 30 H 0.052 0.948 31 H 0.066 0.934 32 H 0.031 0.969 33 H 0.099 0.901 34 H 0.055 0.945 35 H 0.269 0.731 36 H 0.124 0.876 37 H 0.097 0.903 38 H 0.088 0.912 39 H 0.049 0.951 40 H 0.094 0.906 41 H 0.057 0.943 42 H 0.136 0.864 43 H 0.153 0.847 44 H 0.152 0.848 45 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.131 -1.481 -9.429 9.780 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.317 6.317 3 C -0.013 4.013 4 C -0.012 4.012 5 N -0.148 5.148 6 C -0.455 4.455 7 H 0.102 0.898 8 C -0.191 4.191 9 N -0.530 5.530 10 Si 0.794 3.206 11 H -0.193 1.193 12 H -0.208 1.208 13 H -0.196 1.196 14 C 0.280 3.720 15 O -0.520 6.520 16 C -0.172 4.172 17 H 0.129 0.871 18 C -0.162 4.162 19 C -0.062 4.062 20 C -0.120 4.120 21 C -0.112 4.112 22 C -0.105 4.105 23 C -0.137 4.137 24 C -0.139 4.139 25 C -0.141 4.141 26 C -0.133 4.133 27 C -0.073 4.073 28 H 0.058 0.942 29 H 0.111 0.889 30 H 0.071 0.929 31 H 0.084 0.916 32 H 0.049 0.951 33 H 0.117 0.883 34 H 0.073 0.927 35 H 0.078 0.922 36 H 0.142 0.858 37 H 0.116 0.884 38 H 0.107 0.893 39 H 0.068 0.932 40 H 0.113 0.887 41 H 0.076 0.924 42 H 0.154 0.846 43 H 0.171 0.829 44 H 0.170 0.830 45 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges 2.233 -1.126 -9.166 9.501 hybrid contribution -0.530 -0.493 0.799 1.078 sum 1.703 -1.619 -8.367 8.690 Atomic orbital electron populations 1.22887 0.80640 1.03305 1.00284 1.88067 1.20484 1.27804 1.95308 1.22808 0.94520 0.84586 0.99394 1.21421 0.91370 0.97696 0.90666 1.43422 1.56030 1.07539 1.07846 1.19345 1.41318 0.82500 1.02349 0.89849 1.25880 0.93620 1.03301 0.96260 1.69976 1.32172 1.38259 1.12633 0.85360 0.78605 0.78936 0.77723 1.19312 1.20767 1.19602 1.19907 0.80218 0.85600 0.86283 1.90460 1.58852 1.16187 1.86459 1.22013 1.01721 1.00199 0.93302 0.87118 1.22977 0.97959 1.00164 0.95077 1.20243 0.87619 0.97706 1.00673 1.21730 0.94327 0.96794 0.99183 1.20975 0.98520 0.95387 0.96309 1.20747 0.94526 0.98220 0.97000 1.20880 0.98650 0.96121 0.98029 1.21390 0.98178 0.98296 0.95999 1.21348 0.92690 0.99205 1.00841 1.20851 1.00425 0.95534 0.96484 1.19814 0.93954 0.96942 0.96542 0.94234 0.88865 0.92909 0.91568 0.95065 0.88313 0.92680 0.92164 0.85761 0.88423 0.89307 0.93225 0.88717 0.92447 0.84647 0.82944 0.83045 0.85216 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.78 11.01 113.37 1.25 2.03 16 2 O -0.40 -17.14 10.45 -148.98 -1.56 -18.70 16 3 C 0.06 2.75 6.24 71.98 0.45 3.20 16 4 C 0.11 5.61 5.28 86.38 0.46 6.06 16 5 N -0.43 -22.59 2.50 -635.53 -1.59 -24.18 16 6 C -0.33 -17.33 8.50 84.04 0.71 -16.61 16 7 H 0.08 4.35 6.46 -2.91 -0.02 4.33 16 8 C 0.01 0.61 4.95 84.93 0.42 1.03 16 9 N -0.89 -48.63 11.34 21.66 0.25 -48.39 16 10 Si 0.97 42.09 29.60 68.60 2.03 44.12 16 11 H -0.27 -11.27 7.11 99.48 0.71 -10.57 16 12 H -0.28 -12.01 7.11 99.48 0.71 -11.30 16 13 H -0.27 -11.66 7.11 99.48 0.71 -10.95 16 14 C 0.49 24.60 6.23 87.66 0.55 25.15 16 15 O -0.63 -33.48 15.28 -3.06 -0.05 -33.52 16 16 C -0.15 -6.46 5.27 -11.66 -0.06 -6.52 16 17 H 0.11 4.77 6.58 -2.39 -0.02 4.75 16 18 C -0.12 -4.33 9.74 30.42 0.30 -4.03 16 19 C -0.06 -2.31 2.34 -52.99 -0.12 -2.44 16 20 C -0.08 -3.13 6.65 31.36 0.21 -2.93 16 21 C -0.07 -2.59 6.77 30.58 0.21 -2.39 16 22 C -0.10 -3.47 6.14 -19.54 -0.12 -3.59 16 23 C -0.12 -3.23 10.03 22.29 0.22 -3.00 16 24 C -0.12 -2.78 10.05 22.24 0.22 -2.56 16 25 C -0.12 -2.89 10.05 22.24 0.22 -2.67 16 26 C -0.12 -3.27 9.98 22.30 0.22 -3.04 16 27 C -0.07 -2.46 5.93 -19.73 -0.12 -2.58 16 28 H 0.04 1.15 8.14 -2.39 -0.02 1.13 16 29 H 0.09 2.56 8.14 -2.39 -0.02 2.54 16 30 H 0.05 1.39 8.14 -2.39 -0.02 1.37 16 31 H 0.07 2.41 8.14 -2.39 -0.02 2.39 16 32 H 0.03 1.38 8.14 -2.39 -0.02 1.36 16 33 H 0.10 5.30 5.40 -2.39 -0.01 5.28 16 34 H 0.05 2.80 7.60 -2.39 -0.02 2.78 16 35 H 0.27 13.92 8.31 -92.71 -0.77 13.15 16 36 H 0.12 3.44 8.13 -2.39 -0.02 3.43 16 37 H 0.10 3.55 7.68 -2.39 -0.02 3.53 16 38 H 0.09 2.92 8.14 -2.38 -0.02 2.91 16 39 H 0.05 2.23 6.40 -2.39 -0.02 2.21 16 40 H 0.09 2.68 8.14 -2.39 -0.02 2.66 16 41 H 0.06 2.30 8.14 -2.39 -0.02 2.28 16 42 H 0.14 3.05 8.06 -2.91 -0.02 3.02 16 43 H 0.15 2.44 8.06 -2.91 -0.02 2.42 16 44 H 0.15 2.53 8.06 -2.91 -0.02 2.51 16 45 H 0.13 3.21 8.05 -2.91 -0.02 3.19 16 Total: -1.00 -66.22 369.55 5.08 -61.14 By element: Atomic # 1 Polarization: 33.43 SS G_CDS: 0.98 Total: 34.41 kcal Atomic # 6 Polarization: -19.90 SS G_CDS: 5.02 Total: -14.88 kcal Atomic # 7 Polarization: -71.22 SS G_CDS: -1.35 Total: -72.56 kcal Atomic # 8 Polarization: -50.62 SS G_CDS: -1.60 Total: -52.22 kcal Atomic # 14 Polarization: 42.09 SS G_CDS: 2.03 Total: 44.12 kcal Total: -66.22 5.08 -61.14 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000457202672.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.793 kcal (2) G-P(sol) polarization free energy of solvation -66.218 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.425 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.079 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.139 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.346 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds