Wall clock time and date at job start Tue Mar 31 2020 11:29:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.42898 * 113.99997 * 2 1 4 4 H 1.08999 * 112.88879 * 338.16289 * 3 2 1 5 5 C 1.53956 * 113.65930 * 109.50576 * 3 2 1 6 6 C 1.53949 * 87.29370 * 89.82898 * 5 3 2 7 7 H 1.08998 * 113.66712 * 139.29820 * 6 5 3 8 8 N 1.46502 * 113.66435 * 270.26115 * 6 5 3 9 9 C 1.34776 * 120.00249 * 253.98613 * 8 6 5 10 10 O 1.21583 * 119.99690 * 0.02562 * 9 8 6 11 11 C 1.47643 * 119.99945 * 179.97438 * 9 8 6 12 12 C 1.40013 * 119.89096 * 180.02562 * 11 9 8 13 13 C 1.36315 * 120.10260 * 180.02562 * 12 11 9 14 14 C 1.40893 * 119.89412 * 359.97438 * 13 12 11 15 15 C 1.41106 * 120.10358 * 179.97438 * 14 13 12 16 16 H 1.08004 * 119.99787 * 334.72334 * 15 14 13 17 17 C 1.40226 * 120.00305 * 154.72106 * 15 14 13 18 18 N 1.30645 * 119.99983 * 334.31085 * 17 15 14 19 19 Si 1.86797 * 120.00150 * 154.30255 * 17 15 14 20 20 H 1.48497 * 109.47268 * 180.02562 * 19 17 15 21 21 H 1.48497 * 109.47431 * 300.00649 * 19 17 15 22 22 H 1.48500 * 109.47113 * 60.00563 * 19 17 15 23 23 C 1.40887 * 119.78986 * 0.25156 * 14 13 12 24 24 C 1.36312 * 119.89271 * 359.50793 * 23 14 13 25 25 C 1.52907 * 86.88574 * 24.78029 * 6 5 3 26 26 C 1.52910 * 121.14167 * 209.33164 * 25 6 5 27 27 C 1.53955 * 86.78003 * 209.37498 * 26 25 6 28 28 C 1.52909 * 121.13844 * 100.76873 * 25 6 5 29 29 H 1.08998 * 109.46732 * 59.99785 * 1 2 3 30 30 H 1.08998 * 109.47183 * 179.97438 * 1 2 3 31 31 H 1.08999 * 109.47246 * 299.99523 * 1 2 3 32 32 H 1.09004 * 113.57907 * 335.23144 * 5 3 2 33 33 H 1.08999 * 113.65238 * 204.44121 * 5 3 2 34 34 H 0.97001 * 119.99533 * 73.98664 * 8 6 5 35 35 H 1.07994 * 119.95081 * 0.02562 * 12 11 9 36 36 H 1.08005 * 120.05430 * 179.97438 * 13 12 11 37 37 H 0.97001 * 119.99891 * 354.24970 * 18 17 15 38 38 H 1.08001 * 120.05233 * 179.75007 * 23 14 13 39 39 H 1.07998 * 119.94914 * 180.20474 * 24 23 14 40 40 H 1.08995 * 113.66406 * 323.84716 * 26 25 6 41 41 H 1.09002 * 113.66059 * 94.90827 * 26 25 6 42 42 H 1.08999 * 113.58439 * 270.13113 * 27 26 25 43 43 H 1.09007 * 113.57512 * 139.33980 * 27 26 25 44 44 H 1.09008 * 113.66010 * 265.10179 * 28 25 6 45 45 H 1.08997 * 113.66639 * 36.15005 * 28 25 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 1 1.3311 2.0719 -0.3735 5 6 2.6917 1.6783 1.3292 6 6 3.9826 1.0671 0.7547 7 1 4.8793 1.6421 0.9854 8 7 4.1336 -0.3621 1.0390 9 6 5.0236 -0.7751 1.9631 10 8 5.7008 0.0385 2.5610 11 6 5.1753 -2.2154 2.2499 12 6 6.1002 -2.6419 3.2107 13 6 6.2442 -3.9707 3.4786 14 6 5.4602 -4.9154 2.7873 15 6 5.6060 -6.2920 3.0607 16 1 6.5375 -6.6680 3.4574 17 6 4.5415 -7.1718 2.8174 18 7 3.3124 -6.7293 2.8299 19 14 4.8810 -8.9766 2.4752 20 1 3.5969 -9.6880 2.2515 21 1 5.7319 -9.0993 1.2644 22 1 5.5841 -9.5770 3.6372 23 6 4.5343 -4.4816 1.8180 24 6 4.3938 -3.1505 1.5605 25 6 3.4054 1.3596 -0.6307 26 6 3.7648 0.4908 -1.8366 27 6 3.5500 1.7490 -2.6974 28 6 3.8625 2.5757 -1.4370 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3633 -1.0276 -0.0005 31 1 -0.3634 0.5137 0.8900 32 1 2.2973 1.1359 2.1886 33 1 2.7569 2.7527 1.5009 34 1 3.5930 -1.0112 0.5622 35 1 6.7004 -1.9170 3.7404 36 1 6.9582 -4.2988 4.2196 37 1 3.1296 -5.8126 3.0890 38 1 3.9340 -5.2024 1.2827 39 1 3.6820 -2.8167 0.8200 40 1 4.7956 0.1367 -1.8290 41 1 3.0442 -0.3028 -2.0343 42 1 2.5259 1.8650 -3.0522 43 1 4.2889 1.8663 -3.4901 44 1 3.2199 3.4479 -1.3154 45 1 4.9207 2.8077 -1.3171 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000458159802.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:29:53 Heat of formation + Delta-G solvation = -29.304175 kcal Electronic energy + Delta-G solvation = -26338.759607 eV Core-core repulsion = 22707.880641 eV Total energy + Delta-G solvation = -3630.878966 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 315.162 amu Computer time = 1.14 seconds Orbital eigenvalues (eV) -41.04213 -38.75227 -37.21285 -37.15115 -34.77188 -34.00498 -32.20275 -29.88423 -29.38841 -27.03567 -26.08920 -25.57349 -24.80206 -24.10368 -22.06669 -21.14575 -20.67013 -19.56247 -18.52565 -18.08580 -17.12355 -16.39695 -15.87465 -15.67659 -15.46851 -14.79362 -14.58403 -14.27588 -14.13573 -13.95089 -13.68866 -13.55984 -12.91749 -12.56894 -12.50413 -12.38447 -12.30885 -12.21208 -11.98230 -11.89306 -11.39170 -11.32211 -11.19334 -11.12517 -10.92970 -10.51331 -10.48034 -10.33385 -10.08962 -9.85788 -9.66232 -9.47500 -9.17816 -8.95582 -8.46498 -7.89876 -7.68986 -7.40469 -4.66109 2.21984 2.89316 3.04610 3.08917 3.26446 3.28622 3.82968 3.84022 3.86548 4.40769 4.44063 4.53544 4.59297 4.65434 4.79339 4.92449 5.03633 5.20489 5.27404 5.30779 5.43921 5.51473 5.55463 5.60055 5.66562 5.70716 5.78445 5.79894 5.97205 6.01125 6.04517 6.20470 6.21540 6.23840 6.37343 6.65077 6.86159 6.96380 7.06825 7.16573 7.24635 7.49837 7.60322 7.61334 7.73342 7.98986 8.15238 8.33592 8.56161 8.67315 9.12188 9.80110 Molecular weight = 315.16amu Principal moments of inertia in cm(-1) A = 0.017219 B = 0.003292 C = 0.003054 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1625.710228 B = 8502.267671 C = 9167.031664 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.362 6.362 3 C 0.090 3.910 4 H 0.071 0.929 5 C -0.176 4.176 6 C 0.149 3.851 7 H 0.096 0.904 8 N -0.713 5.713 9 C 0.574 3.426 10 O -0.578 6.578 11 C -0.292 4.292 12 C -0.015 4.015 13 C -0.240 4.240 14 C 0.110 3.890 15 C -0.497 4.497 16 H 0.082 0.918 17 C 0.037 3.963 18 N -0.775 5.775 19 Si 1.067 2.933 20 H -0.272 1.272 21 H -0.272 1.272 22 H -0.273 1.273 23 C -0.231 4.231 24 C -0.040 4.040 25 C -0.118 4.118 26 C -0.120 4.120 27 C -0.140 4.140 28 C -0.105 4.105 29 H 0.039 0.961 30 H 0.088 0.912 31 H 0.041 0.959 32 H 0.078 0.922 33 H 0.093 0.907 34 H 0.403 0.597 35 H 0.102 0.898 36 H 0.098 0.902 37 H 0.304 0.696 38 H 0.108 0.892 39 H 0.092 0.908 40 H 0.085 0.915 41 H 0.074 0.926 42 H 0.077 0.923 43 H 0.067 0.933 44 H 0.069 0.931 45 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.978 12.082 -9.160 16.298 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 O -0.280 6.280 3 C 0.032 3.968 4 H 0.089 0.911 5 C -0.215 4.215 6 C 0.042 3.958 7 H 0.114 0.886 8 N -0.364 5.364 9 C 0.368 3.632 10 O -0.461 6.461 11 C -0.297 4.297 12 C -0.034 4.034 13 C -0.259 4.259 14 C 0.107 3.893 15 C -0.523 4.523 16 H 0.100 0.900 17 C -0.188 4.188 18 N -0.396 5.396 19 Si 0.890 3.110 20 H -0.196 1.196 21 H -0.197 1.197 22 H -0.198 1.198 23 C -0.250 4.250 24 C -0.059 4.059 25 C -0.119 4.119 26 C -0.157 4.157 27 C -0.177 4.177 28 C -0.143 4.143 29 H 0.058 0.942 30 H 0.107 0.893 31 H 0.060 0.940 32 H 0.097 0.903 33 H 0.111 0.889 34 H 0.240 0.760 35 H 0.120 0.880 36 H 0.116 0.884 37 H 0.118 0.882 38 H 0.126 0.874 39 H 0.110 0.890 40 H 0.103 0.897 41 H 0.093 0.907 42 H 0.095 0.905 43 H 0.086 0.914 44 H 0.088 0.912 45 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -6.196 11.060 -9.122 15.619 hybrid contribution 0.094 1.455 0.255 1.480 sum -6.102 12.515 -8.867 16.507 Atomic orbital electron populations 1.22801 0.80803 1.03026 0.99691 1.87857 1.19641 1.26077 1.94439 1.22815 0.92797 0.85189 0.95990 0.91069 1.23987 0.98230 1.01269 0.98041 1.21368 0.97446 0.83835 0.93104 0.88612 1.45477 1.42231 1.06192 1.42532 1.18541 0.77801 0.89138 0.77671 1.90618 1.47476 1.56126 1.51867 1.18857 1.09916 0.90256 1.10647 1.20390 0.94138 0.95180 0.93712 1.20665 1.07639 0.92376 1.05269 1.17814 0.89927 0.93106 0.88500 1.20858 1.01951 0.92628 1.36908 0.89976 1.27245 0.91910 1.08051 0.91590 1.70386 1.21232 1.21742 1.26289 0.83604 0.77178 0.72104 0.78162 1.19612 1.19695 1.19847 1.20817 1.06533 0.94593 1.03092 1.20446 0.95688 0.93502 0.96270 1.23209 0.95472 0.99125 0.94051 1.22547 1.02263 0.96690 0.94208 1.22845 1.01525 0.96843 0.96486 1.22561 1.01746 0.95179 0.94767 0.94207 0.89321 0.94050 0.90280 0.88878 0.76030 0.88011 0.88377 0.88241 0.87449 0.88974 0.89672 0.90694 0.90467 0.91382 0.91230 0.89161 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.32 10.86 101.05 1.10 1.42 16 2 O -0.36 -4.61 9.11 -35.23 -0.32 -4.93 16 3 C 0.09 1.03 4.16 -26.13 -0.11 0.92 16 4 H 0.07 0.67 7.90 -51.93 -0.41 0.26 16 5 C -0.18 -2.25 7.72 -25.74 -0.20 -2.45 16 6 C 0.15 2.22 4.09 -67.48 -0.28 1.95 16 7 H 0.10 1.56 7.50 -51.93 -0.39 1.17 16 8 N -0.71 -12.70 4.90 -54.38 -0.27 -12.96 16 9 C 0.57 12.59 7.76 -12.42 -0.10 12.49 16 10 O -0.58 -14.06 15.94 5.29 0.08 -13.98 16 11 C -0.29 -6.84 5.89 -104.73 -0.62 -7.45 16 12 C -0.01 -0.36 9.52 -39.61 -0.38 -0.74 16 13 C -0.24 -5.92 9.73 -39.27 -0.38 -6.31 16 14 C 0.11 2.83 5.30 -106.80 -0.57 2.27 16 15 C -0.50 -12.59 8.98 -37.75 -0.34 -12.93 16 16 H 0.08 2.01 7.97 -52.48 -0.42 1.59 16 17 C 0.04 0.88 4.93 -17.31 -0.09 0.79 16 18 N -0.77 -19.45 12.31 55.56 0.68 -18.77 16 19 Si 1.07 20.21 30.01 -169.99 -5.10 15.10 16 20 H -0.27 -5.11 7.11 56.52 0.40 -4.70 16 21 H -0.27 -4.98 7.11 56.52 0.40 -4.58 16 22 H -0.27 -4.91 7.11 56.52 0.40 -4.51 16 23 C -0.23 -5.70 7.90 -39.27 -0.31 -6.01 16 24 C -0.04 -0.90 9.47 -39.61 -0.38 -1.28 16 25 C -0.12 -1.36 0.85 -154.56 -0.13 -1.49 16 26 C -0.12 -1.37 7.34 -26.28 -0.19 -1.56 16 27 C -0.14 -1.26 8.08 -25.75 -0.21 -1.46 16 28 C -0.10 -0.96 7.84 -26.29 -0.21 -1.17 16 29 H 0.04 0.31 8.14 -51.93 -0.42 -0.11 16 30 H 0.09 0.80 8.14 -51.93 -0.42 0.38 16 31 H 0.04 0.37 8.14 -51.93 -0.42 -0.05 16 32 H 0.08 1.16 8.14 -51.93 -0.42 0.74 16 33 H 0.09 0.99 8.14 -51.93 -0.42 0.57 16 34 H 0.40 6.95 5.60 -40.82 -0.23 6.72 16 35 H 0.10 2.37 7.63 -52.49 -0.40 1.97 16 36 H 0.10 2.28 8.06 -52.48 -0.42 1.85 16 37 H 0.30 7.86 6.71 -40.82 -0.27 7.59 16 38 H 0.11 2.68 6.49 -52.49 -0.34 2.34 16 39 H 0.09 1.84 6.37 -52.49 -0.33 1.51 16 40 H 0.08 1.06 8.14 -51.93 -0.42 0.64 16 41 H 0.07 0.90 7.85 -51.93 -0.41 0.50 16 42 H 0.08 0.64 8.14 -51.93 -0.42 0.22 16 43 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 44 H 0.07 0.54 8.14 -51.92 -0.42 0.12 16 45 H 0.09 0.83 8.14 -51.93 -0.42 0.40 16 LS Contribution 367.49 15.07 5.54 5.54 Total: -1.00 -28.87 367.49 -9.40 -38.27 By element: Atomic # 1 Polarization: 21.39 SS G_CDS: -6.65 Total: 14.74 kcal Atomic # 6 Polarization: -19.64 SS G_CDS: -3.37 Total: -23.01 kcal Atomic # 7 Polarization: -32.15 SS G_CDS: 0.42 Total: -31.73 kcal Atomic # 8 Polarization: -18.67 SS G_CDS: -0.24 Total: -18.90 kcal Atomic # 14 Polarization: 20.21 SS G_CDS: -5.10 Total: 15.10 kcal Total LS contribution 5.54 Total: 5.54 kcal Total: -28.87 -9.40 -38.27 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000458159802.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.965 kcal (2) G-P(sol) polarization free energy of solvation -28.866 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.901 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.403 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.269 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.304 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.14 seconds