Wall clock time and date at job start Tue Mar 31 2020 11:29:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.42898 * 113.99997 * 2 1 4 4 H 1.08999 * 112.88879 * 338.16289 * 3 2 1 5 5 C 1.53956 * 113.65930 * 109.50576 * 3 2 1 6 6 C 1.53949 * 87.29370 * 89.82898 * 5 3 2 7 7 H 1.08998 * 113.66712 * 139.29820 * 6 5 3 8 8 N 1.46502 * 113.66435 * 270.26115 * 6 5 3 9 9 C 1.34776 * 120.00249 * 253.98613 * 8 6 5 10 10 O 1.21583 * 119.99690 * 0.02562 * 9 8 6 11 11 C 1.47643 * 119.99945 * 179.97438 * 9 8 6 12 12 C 1.40013 * 119.89096 * 180.02562 * 11 9 8 13 13 C 1.36315 * 120.10260 * 180.02562 * 12 11 9 14 14 C 1.40893 * 119.89412 * 359.97438 * 13 12 11 15 15 C 1.41106 * 120.10358 * 179.97438 * 14 13 12 16 16 H 1.08004 * 119.99787 * 334.72334 * 15 14 13 17 17 C 1.40226 * 120.00305 * 154.72106 * 15 14 13 18 18 N 1.30645 * 119.99983 * 334.31085 * 17 15 14 19 19 Si 1.86797 * 120.00150 * 154.30255 * 17 15 14 20 20 H 1.48497 * 109.47268 * 180.02562 * 19 17 15 21 21 H 1.48497 * 109.47431 * 300.00649 * 19 17 15 22 22 H 1.48500 * 109.47113 * 60.00563 * 19 17 15 23 23 C 1.40887 * 119.78986 * 0.25156 * 14 13 12 24 24 C 1.36312 * 119.89271 * 359.50793 * 23 14 13 25 25 C 1.52907 * 86.88574 * 24.78029 * 6 5 3 26 26 C 1.52910 * 121.14167 * 209.33164 * 25 6 5 27 27 C 1.53955 * 86.78003 * 209.37498 * 26 25 6 28 28 C 1.52909 * 121.13844 * 100.76873 * 25 6 5 29 29 H 1.08998 * 109.46732 * 59.99785 * 1 2 3 30 30 H 1.08998 * 109.47183 * 179.97438 * 1 2 3 31 31 H 1.08999 * 109.47246 * 299.99523 * 1 2 3 32 32 H 1.09004 * 113.57907 * 335.23144 * 5 3 2 33 33 H 1.08999 * 113.65238 * 204.44121 * 5 3 2 34 34 H 0.97001 * 119.99533 * 73.98664 * 8 6 5 35 35 H 1.07994 * 119.95081 * 0.02562 * 12 11 9 36 36 H 1.08005 * 120.05430 * 179.97438 * 13 12 11 37 37 H 0.97001 * 119.99891 * 354.24970 * 18 17 15 38 38 H 1.08001 * 120.05233 * 179.75007 * 23 14 13 39 39 H 1.07998 * 119.94914 * 180.20474 * 24 23 14 40 40 H 1.08995 * 113.66406 * 323.84716 * 26 25 6 41 41 H 1.09002 * 113.66059 * 94.90827 * 26 25 6 42 42 H 1.08999 * 113.58439 * 270.13113 * 27 26 25 43 43 H 1.09007 * 113.57512 * 139.33980 * 27 26 25 44 44 H 1.09008 * 113.66010 * 265.10179 * 28 25 6 45 45 H 1.08997 * 113.66639 * 36.15005 * 28 25 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 1 1.3311 2.0719 -0.3735 5 6 2.6917 1.6783 1.3292 6 6 3.9826 1.0671 0.7547 7 1 4.8793 1.6421 0.9854 8 7 4.1336 -0.3621 1.0390 9 6 5.0236 -0.7751 1.9631 10 8 5.7008 0.0385 2.5610 11 6 5.1753 -2.2154 2.2499 12 6 6.1002 -2.6419 3.2107 13 6 6.2442 -3.9707 3.4786 14 6 5.4602 -4.9154 2.7873 15 6 5.6060 -6.2920 3.0607 16 1 6.5375 -6.6680 3.4574 17 6 4.5415 -7.1718 2.8174 18 7 3.3124 -6.7293 2.8299 19 14 4.8810 -8.9766 2.4752 20 1 3.5969 -9.6880 2.2515 21 1 5.7319 -9.0993 1.2644 22 1 5.5841 -9.5770 3.6372 23 6 4.5343 -4.4816 1.8180 24 6 4.3938 -3.1505 1.5605 25 6 3.4054 1.3596 -0.6307 26 6 3.7648 0.4908 -1.8366 27 6 3.5500 1.7490 -2.6974 28 6 3.8625 2.5757 -1.4370 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3633 -1.0276 -0.0005 31 1 -0.3634 0.5137 0.8900 32 1 2.2973 1.1359 2.1886 33 1 2.7569 2.7527 1.5009 34 1 3.5930 -1.0112 0.5622 35 1 6.7004 -1.9170 3.7404 36 1 6.9582 -4.2988 4.2196 37 1 3.1296 -5.8126 3.0890 38 1 3.9340 -5.2024 1.2827 39 1 3.6820 -2.8167 0.8200 40 1 4.7956 0.1367 -1.8290 41 1 3.0442 -0.3028 -2.0343 42 1 2.5259 1.8650 -3.0522 43 1 4.2889 1.8663 -3.4901 44 1 3.2199 3.4479 -1.3154 45 1 4.9207 2.8077 -1.3171 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000458159802.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:29:51 Heat of formation + Delta-G solvation = -44.523306 kcal Electronic energy + Delta-G solvation = -26339.419558 eV Core-core repulsion = 22707.880641 eV Total energy + Delta-G solvation = -3631.538917 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 315.162 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -42.08229 -40.46717 -39.02672 -38.01289 -35.97691 -35.87381 -33.63527 -31.70381 -31.30671 -27.95114 -27.64400 -26.53771 -25.77777 -25.21798 -23.74582 -22.94189 -21.89010 -21.16927 -19.98298 -19.60314 -18.50046 -17.45794 -17.08105 -16.74035 -16.60489 -16.37850 -15.95778 -15.75273 -15.66996 -15.40004 -15.31945 -14.68293 -14.37452 -14.18668 -14.07939 -13.80392 -13.35204 -13.29564 -13.17404 -13.04860 -12.92312 -12.83319 -12.66510 -12.19587 -11.99154 -11.98115 -11.65556 -11.56548 -11.39395 -11.21942 -11.05880 -10.98561 -10.72699 -10.38017 -9.96406 -9.81946 -9.59460 -9.31988 -6.62550 0.34137 0.94480 1.51093 1.54667 1.81854 2.07795 2.19189 2.28638 2.68836 2.70245 3.40454 3.47570 3.54773 3.75691 3.80529 3.87179 3.96364 4.14179 4.16871 4.25196 4.27901 4.49877 4.50125 4.56470 4.63921 4.71674 4.73906 4.81326 4.86002 4.86739 4.92260 4.94112 4.98453 5.04338 5.08880 5.13380 5.30321 5.38227 5.52576 5.56045 5.64003 5.66017 5.69897 5.83046 6.06565 6.21211 6.28993 6.61836 6.71914 6.75255 7.41091 7.86213 Molecular weight = 315.16amu Principal moments of inertia in cm(-1) A = 0.017219 B = 0.003292 C = 0.003054 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1625.710228 B = 8502.267671 C = 9167.031664 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.390 6.390 3 C 0.098 3.902 4 H 0.103 0.897 5 C -0.172 4.172 6 C 0.125 3.875 7 H 0.078 0.922 8 N -0.697 5.697 9 C 0.572 3.428 10 O -0.607 6.607 11 C -0.300 4.300 12 C -0.024 4.024 13 C -0.252 4.252 14 C 0.087 3.913 15 C -0.524 4.524 16 H 0.084 0.916 17 C 0.006 3.994 18 N -0.790 5.790 19 Si 1.119 2.881 20 H -0.268 1.268 21 H -0.261 1.261 22 H -0.256 1.256 23 C -0.243 4.243 24 C -0.032 4.032 25 C -0.111 4.111 26 C -0.129 4.129 27 C -0.126 4.126 28 C -0.097 4.097 29 H 0.061 0.939 30 H 0.088 0.912 31 H 0.046 0.954 32 H 0.055 0.945 33 H 0.119 0.881 34 H 0.406 0.594 35 H 0.105 0.895 36 H 0.105 0.895 37 H 0.289 0.711 38 H 0.101 0.899 39 H 0.118 0.882 40 H 0.068 0.932 41 H 0.066 0.934 42 H 0.092 0.908 43 H 0.077 0.923 44 H 0.093 0.907 45 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.172 13.046 -10.888 18.444 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.308 6.308 3 C 0.040 3.960 4 H 0.121 0.879 5 C -0.211 4.211 6 C 0.019 3.981 7 H 0.096 0.904 8 N -0.347 5.347 9 C 0.365 3.635 10 O -0.491 6.491 11 C -0.304 4.304 12 C -0.043 4.043 13 C -0.271 4.271 14 C 0.083 3.917 15 C -0.550 4.550 16 H 0.102 0.898 17 C -0.214 4.214 18 N -0.410 5.410 19 Si 0.935 3.065 20 H -0.193 1.193 21 H -0.186 1.186 22 H -0.180 1.180 23 C -0.263 4.263 24 C -0.051 4.051 25 C -0.112 4.112 26 C -0.167 4.167 27 C -0.163 4.163 28 C -0.135 4.135 29 H 0.080 0.920 30 H 0.106 0.894 31 H 0.064 0.936 32 H 0.074 0.926 33 H 0.137 0.863 34 H 0.244 0.756 35 H 0.124 0.876 36 H 0.124 0.876 37 H 0.102 0.898 38 H 0.119 0.881 39 H 0.136 0.864 40 H 0.086 0.914 41 H 0.085 0.915 42 H 0.110 0.890 43 H 0.095 0.905 44 H 0.112 0.888 45 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -7.415 12.064 -10.869 17.851 hybrid contribution 0.464 1.278 0.802 1.579 sum -6.951 13.342 -10.067 18.102 Atomic orbital electron populations 1.22956 0.79321 1.03544 1.00972 1.87821 1.21411 1.27107 1.94490 1.22816 0.93131 0.85512 0.94538 0.87919 1.24014 0.96689 1.02314 0.98052 1.21735 0.97997 0.81640 0.96690 0.90361 1.45347 1.40555 1.08005 1.40785 1.18374 0.78434 0.88301 0.78364 1.90595 1.48840 1.56504 1.53205 1.19166 1.09472 0.91544 1.10207 1.20538 0.94547 0.95119 0.94129 1.20814 1.08031 0.92599 1.05657 1.18132 0.90596 0.93819 0.89113 1.21105 1.02632 0.93016 1.38252 0.89820 1.28666 0.90959 1.11679 0.90048 1.70499 1.21949 1.20908 1.27689 0.82980 0.77420 0.67133 0.78996 1.19260 1.18580 1.17990 1.20823 1.06830 0.95244 1.03363 1.20619 0.95545 0.92681 0.96214 1.23277 0.95143 1.00748 0.92023 1.22569 1.01038 0.97690 0.95411 1.22807 1.02709 0.94500 0.96330 1.22590 1.02160 0.95037 0.93686 0.92027 0.89351 0.93578 0.92598 0.86333 0.75634 0.87646 0.87644 0.89850 0.88093 0.86396 0.91356 0.91490 0.88962 0.90464 0.88808 0.89333 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.48 10.86 113.37 1.23 1.71 16 2 O -0.39 -9.21 9.11 -148.98 -1.36 -10.56 16 3 C 0.10 1.97 4.16 30.99 0.13 2.09 16 4 H 0.10 1.46 7.90 -2.39 -0.02 1.44 16 5 C -0.17 -4.13 7.72 31.23 0.24 -3.89 16 6 C 0.13 3.64 4.09 45.28 0.19 3.83 16 7 H 0.08 2.55 7.50 -2.39 -0.02 2.53 16 8 N -0.70 -24.86 4.90 -444.21 -2.17 -27.03 16 9 C 0.57 25.47 7.76 86.73 0.67 26.15 16 10 O -0.61 -30.06 15.94 -3.98 -0.06 -30.12 16 11 C -0.30 -14.25 5.89 -19.93 -0.12 -14.37 16 12 C -0.02 -1.19 9.52 22.25 0.21 -0.98 16 13 C -0.25 -12.76 9.73 22.47 0.22 -12.55 16 14 C 0.09 4.58 5.30 -21.28 -0.11 4.47 16 15 C -0.52 -27.00 8.98 23.46 0.21 -26.79 16 16 H 0.08 4.16 7.97 -2.91 -0.02 4.13 16 17 C 0.01 0.30 4.93 85.35 0.42 0.72 16 18 N -0.79 -40.15 12.31 21.87 0.27 -39.88 16 19 Si 1.12 39.94 30.01 68.60 2.06 42.00 16 20 H -0.27 -9.38 7.11 99.48 0.71 -8.67 16 21 H -0.26 -8.85 7.11 99.48 0.71 -8.14 16 22 H -0.26 -8.38 7.11 99.48 0.71 -7.67 16 23 C -0.24 -12.26 7.90 22.47 0.18 -12.08 16 24 C -0.03 -1.45 9.47 22.25 0.21 -1.24 16 25 C -0.11 -2.33 0.85 -52.21 -0.04 -2.38 16 26 C -0.13 -2.77 7.34 30.89 0.23 -2.55 16 27 C -0.13 -1.87 8.08 31.23 0.25 -1.62 16 28 C -0.10 -1.48 7.84 30.88 0.24 -1.23 16 29 H 0.06 0.78 8.14 -2.39 -0.02 0.76 16 30 H 0.09 1.48 8.14 -2.39 -0.02 1.46 16 31 H 0.05 0.73 8.14 -2.39 -0.02 0.71 16 32 H 0.06 1.61 8.14 -2.38 -0.02 1.59 16 33 H 0.12 2.21 8.14 -2.39 -0.02 2.20 16 34 H 0.41 13.91 5.60 -92.71 -0.52 13.40 16 35 H 0.11 5.05 7.63 -2.91 -0.02 5.03 16 36 H 0.11 5.04 8.06 -2.91 -0.02 5.01 16 37 H 0.29 15.40 6.71 -92.71 -0.62 14.78 16 38 H 0.10 5.16 6.49 -2.91 -0.02 5.14 16 39 H 0.12 4.68 6.37 -2.91 -0.02 4.66 16 40 H 0.07 1.68 8.14 -2.39 -0.02 1.66 16 41 H 0.07 1.53 7.85 -2.39 -0.02 1.51 16 42 H 0.09 1.14 8.14 -2.39 -0.02 1.12 16 43 H 0.08 1.03 8.14 -2.38 -0.02 1.02 16 44 H 0.09 1.02 8.14 -2.38 -0.02 1.00 16 45 H 0.09 1.41 8.14 -2.39 -0.02 1.39 16 Total: -1.00 -63.97 367.49 3.71 -60.26 By element: Atomic # 1 Polarization: 45.43 SS G_CDS: 0.62 Total: 46.05 kcal Atomic # 6 Polarization: -45.06 SS G_CDS: 4.36 Total: -40.70 kcal Atomic # 7 Polarization: -65.01 SS G_CDS: -1.91 Total: -66.92 kcal Atomic # 8 Polarization: -39.27 SS G_CDS: -1.42 Total: -40.69 kcal Atomic # 14 Polarization: 39.94 SS G_CDS: 2.06 Total: 42.00 kcal Total: -63.97 3.71 -60.26 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000458159802.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.733 kcal (2) G-P(sol) polarization free energy of solvation -63.969 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.236 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.713 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.256 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.523 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds