Wall clock time and date at job start Tue Mar 31 2020 11:30:00
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 O 1.42903 * 1
3 3 C 1.42899 * 114.00227 * 2 1
4 4 H 1.08999 * 112.88468 * 21.83599 * 3 2 1
5 5 C 1.53950 * 113.66125 * 250.49107 * 3 2 1
6 6 C 1.53947 * 87.29214 * 220.79045 * 5 3 2
7 7 H 1.09006 * 113.65774 * 139.30404 * 6 5 3
8 8 N 1.46505 * 113.66528 * 270.25882 * 6 5 3
9 9 C 1.34768 * 120.00219 * 253.99391 * 8 6 5
10 10 O 1.21594 * 120.00250 * 359.97438 * 9 8 6
11 11 C 1.47644 * 120.00189 * 179.97438 * 9 8 6
12 12 C 1.40009 * 119.89699 * 179.97438 * 11 9 8
13 13 C 1.36323 * 120.10381 * 179.97438 * 12 11 9
14 14 C 1.40887 * 119.89440 * 0.02978 * 13 12 11
15 15 C 1.41110 * 120.10345 * 179.97438 * 14 13 12
16 16 H 1.07997 * 119.99907 * 334.76579 * 15 14 13
17 17 C 1.40228 * 119.99675 * 155.04487 * 15 14 13
18 18 N 1.30651 * 120.00071 * 342.49843 * 17 15 14
19 19 Si 1.86798 * 119.99751 * 162.50194 * 17 15 14
20 20 H 1.48496 * 109.47274 * 359.97438 * 19 17 15
21 21 H 1.48510 * 109.47105 * 119.99774 * 19 17 15
22 22 H 1.48501 * 109.47092 * 239.99657 * 19 17 15
23 23 C 1.40885 * 119.79269 * 0.27122 * 14 13 12
24 24 C 1.36320 * 119.89027 * 359.42171 * 23 14 13
25 25 C 1.52906 * 86.88565 * 24.78004 * 6 5 3
26 26 C 1.52905 * 121.14081 * 209.32756 * 25 6 5
27 27 C 1.53953 * 86.78191 * 209.38131 * 26 25 6
28 28 C 1.52914 * 121.13289 * 100.76386 * 25 6 5
29 29 H 1.09001 * 109.47397 * 300.00411 * 1 2 3
30 30 H 1.09007 * 109.47001 * 60.00506 * 1 2 3
31 31 H 1.09000 * 109.47222 * 180.02562 * 1 2 3
32 32 H 1.09005 * 113.57696 * 106.18726 * 5 3 2
33 33 H 1.08995 * 113.65193 * 335.40779 * 5 3 2
34 34 H 0.96997 * 119.99132 * 73.99346 * 8 6 5
35 35 H 1.07998 * 119.94983 * 0.02802 * 12 11 9
36 36 H 1.08003 * 120.05116 * 180.02562 * 13 12 11
37 37 H 0.96995 * 119.99799 * 180.02562 * 18 17 15
38 38 H 1.08001 * 120.05718 * 179.72679 * 23 14 13
39 39 H 1.08003 * 119.95083 * 180.32136 * 24 23 14
40 40 H 1.08994 * 113.66425 * 323.85055 * 26 25 6
41 41 H 1.08996 * 113.65848 * 94.90957 * 26 25 6
42 42 H 1.09006 * 113.58053 * 270.13169 * 27 26 25
43 43 H 1.09003 * 113.65222 * 139.35738 * 27 26 25
44 44 H 1.08999 * 113.66468 * 265.09354 * 28 25 6
45 45 H 1.09003 * 113.66507 * 36.06779 * 28 25 6
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 8 1.4290 0.0000 0.0000
3 6 2.0103 1.3054 0.0000
4 1 1.3312 2.0718 0.3735
5 6 2.6918 1.6783 -1.3291
6 6 3.8159 2.3131 -0.4904
7 1 4.8149 2.1238 -0.8832
8 7 3.5869 3.7248 -0.1726
9 6 4.2936 4.6815 -0.8064
10 8 5.1216 4.3730 -1.6416
11 6 4.0624 6.1042 -0.4865
12 6 4.7982 7.0962 -1.1458
13 6 4.5877 8.4112 -0.8541
14 6 3.6285 8.7711 0.1129
15 6 3.4075 10.1309 0.4187
16 1 4.1913 10.8555 0.2546
17 6 2.1722 10.5402 0.9410
18 7 1.1269 9.7641 0.8309
19 14 2.0212 12.1950 1.7943
20 1 3.3400 12.8775 1.7879
21 1 1.0264 13.0327 1.0772
22 1 1.5770 11.9903 3.1964
23 6 2.8951 7.7690 0.7783
24 6 3.1080 6.4570 0.4754
25 6 3.4056 1.3573 0.6304
26 6 3.5985 1.7329 2.1000
27 6 3.7536 0.2260 2.3748
28 6 4.1965 0.0783 0.9077
29 1 -0.3634 0.5139 0.8899
30 1 -0.3633 0.5138 -0.8901
31 1 -0.3634 -1.0277 0.0005
32 1 2.1283 2.4000 -1.9206
33 1 3.0161 0.8158 -1.9113
34 1 2.9266 3.9708 0.4939
35 1 5.5330 6.8194 -1.8873
36 1 5.1555 9.1757 -1.3636
37 1 0.2724 10.0474 1.1919
38 1 2.1619 8.0399 1.5235
39 1 2.5426 5.6882 0.9811
40 1 4.5050 2.3076 2.2893
41 1 2.7130 2.1724 2.5590
42 1 2.8121 -0.2756 2.5987
43 1 4.5390 -0.0089 3.0932
44 1 3.7886 -0.8039 0.4144
45 1 5.2710 0.1877 0.7605
RHF calculation, no. of doubly occupied orbitals= 59
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000458159804.mol2 45
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 11:30:00
Heat of formation + Delta-G solvation = -25.629213 kcal
Electronic energy + Delta-G solvation = -25966.953481 eV
Core-core repulsion = 22336.233873 eV
Total energy + Delta-G solvation = -3630.719608 eV
No. of doubly occupied orbitals = 59
Molecular weight
(most abundant/longest-lived isotopes) = 315.162 amu
Computer time = 1.10 seconds
Orbital eigenvalues (eV)
-41.00316 -38.76934 -37.15487 -36.97845 -34.94741 -33.88953 -32.21820 -30.02401
-29.46440 -27.09824 -26.02979 -25.84779 -24.75677 -23.93606 -22.11946 -21.06119
-20.68003 -19.58618 -18.47847 -17.54591 -17.01402 -16.61884 -15.87424 -15.69554
-15.57914 -15.26150 -14.68126 -14.22416 -14.05746 -13.96793 -13.29439 -13.23793
-12.91413 -12.80847 -12.52449 -12.40764 -12.30123 -12.11700 -11.95595 -11.84577
-11.45980 -11.33066 -11.26943 -11.09926 -10.97920 -10.68526 -10.44917 -10.37677
-10.13752 -10.04567 -9.58599 -9.43939 -9.38655 -8.99053 -8.56420 -7.74789
-7.56538 -7.06054 -4.62888 2.19946 2.88434 2.93451 2.98996 3.00972
3.52776 3.71758 3.72639 3.82275 4.26984 4.45089 4.54589 4.63576
4.70245 4.78928 4.90797 5.10920 5.22009 5.25689 5.37517 5.46649
5.54819 5.58962 5.66502 5.73909 5.80278 5.85841 5.88513 5.95621
6.01735 6.02907 6.21743 6.29475 6.30612 6.41232 6.74382 6.80476
6.92452 7.02974 7.10495 7.13051 7.41219 7.62843 7.76153 7.83653
8.04661 8.22107 8.37418 8.60735 8.72562 9.05826 9.86216
Molecular weight = 315.16amu
Principal moments of inertia in cm(-1)
A = 0.018113 B = 0.002952 C = 0.002781
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1545.499740 B = 9484.155999 C =10065.008204
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C 0.029 3.971
2 O -0.373 6.373
3 C 0.087 3.913
4 H 0.088 0.912
5 C -0.168 4.168
6 C 0.143 3.857
7 H 0.104 0.896
8 N -0.722 5.722
9 C 0.574 3.426
10 O -0.573 6.573
11 C -0.284 4.284
12 C -0.021 4.021
13 C -0.238 4.238
14 C 0.129 3.871
15 C -0.442 4.442
16 H 0.085 0.915
17 C 0.074 3.926
18 N -0.773 5.773
19 Si 0.913 3.087
20 H -0.257 1.257
21 H -0.271 1.271
22 H -0.269 1.269
23 C -0.177 4.177
24 C -0.062 4.062
25 C -0.110 4.110
26 C -0.126 4.126
27 C -0.135 4.135
28 C -0.103 4.103
29 H 0.040 0.960
30 H 0.041 0.959
31 H 0.083 0.917
32 H 0.074 0.926
33 H 0.094 0.906
34 H 0.396 0.604
35 H 0.101 0.899
36 H 0.098 0.902
37 H 0.286 0.714
38 H 0.120 0.880
39 H 0.087 0.913
40 H 0.088 0.912
41 H 0.066 0.934
42 H 0.079 0.921
43 H 0.065 0.935
44 H 0.077 0.923
45 H 0.083 0.917
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -2.781 -14.067 3.700 14.809
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.067 4.067
2 O -0.291 6.291
3 C 0.029 3.971
4 H 0.106 0.894
5 C -0.207 4.207
6 C 0.036 3.964
7 H 0.122 0.878
8 N -0.373 5.373
9 C 0.370 3.630
10 O -0.455 6.455
11 C -0.288 4.288
12 C -0.041 4.041
13 C -0.258 4.258
14 C 0.126 3.874
15 C -0.470 4.470
16 H 0.103 0.897
17 C -0.147 4.147
18 N -0.396 5.396
19 Si 0.736 3.264
20 H -0.181 1.181
21 H -0.197 1.197
22 H -0.194 1.194
23 C -0.197 4.197
24 C -0.082 4.082
25 C -0.111 4.111
26 C -0.164 4.164
27 C -0.172 4.172
28 C -0.141 4.141
29 H 0.059 0.941
30 H 0.060 0.940
31 H 0.101 0.899
32 H 0.093 0.907
33 H 0.112 0.888
34 H 0.232 0.768
35 H 0.119 0.881
36 H 0.116 0.884
37 H 0.097 0.903
38 H 0.137 0.863
39 H 0.105 0.895
40 H 0.106 0.894
41 H 0.085 0.915
42 H 0.098 0.902
43 H 0.083 0.917
44 H 0.096 0.904
45 H 0.101 0.899
Dipole moment (debyes) X Y Z Total
from point charges -2.345 -14.449 3.151 14.973
hybrid contribution -0.974 1.089 0.640 1.595
sum -3.318 -13.360 3.791 14.278
Atomic orbital electron populations
1.22771 0.81478 1.02460 1.00018 1.87908 1.19251 1.27393 1.94574
1.23541 0.92357 0.84914 0.96246 0.89425 1.23964 0.98525 1.01116
0.97074 1.21317 0.99420 0.80951 0.94677 0.87798 1.45553 1.43189
1.04351 1.44214 1.18600 0.79088 0.85947 0.79403 1.90635 1.36178
1.83754 1.34912 1.18885 1.09244 0.90351 1.10343 1.20365 0.95523
0.92351 0.95823 1.20731 1.06639 0.94649 1.03779 1.17789 0.88861
0.93418 0.87343 1.19883 0.98416 0.94068 1.34645 0.89665 1.26101
0.95157 0.99773 0.93653 1.69748 1.00692 1.37147 1.31990 0.86172
0.79784 0.80944 0.79461 1.18052 1.19663 1.19387 1.20965 1.04258
0.91203 1.03242 1.20455 0.95670 0.96049 0.95986 1.23253 0.95428
0.97658 0.94761 1.22716 1.02407 0.96760 0.94472 1.22783 1.01445
0.96417 0.96576 1.22440 0.99158 0.96196 0.96310 0.94127 0.94034
0.89889 0.90741 0.88754 0.76829 0.88087 0.88360 0.90304 0.86266
0.89476 0.89359 0.91498 0.90202 0.91669 0.90448 0.89850
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 18.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C 0.03 0.26 10.86 101.05 1.10 1.35 16
2 O -0.37 -4.26 9.91 -35.23 -0.35 -4.61 16
3 C 0.09 1.02 4.10 -26.13 -0.11 0.91 16
4 H 0.09 0.99 7.90 -51.93 -0.41 0.58 16
5 C -0.17 -2.18 7.72 -25.75 -0.20 -2.38 16
6 C 0.14 2.06 4.09 -67.48 -0.28 1.78 16
7 H 0.10 1.67 7.50 -51.93 -0.39 1.28 16
8 N -0.72 -11.90 5.01 -54.37 -0.27 -12.17 16
9 C 0.57 12.06 7.76 -12.42 -0.10 11.96 16
10 O -0.57 -13.54 15.94 5.28 0.08 -13.46 16
11 C -0.28 -6.40 5.89 -104.73 -0.62 -7.02 16
12 C -0.02 -0.50 9.52 -39.61 -0.38 -0.88 16
13 C -0.24 -5.73 9.73 -39.27 -0.38 -6.11 16
14 C 0.13 3.25 5.57 -106.80 -0.59 2.66 16
15 C -0.44 -10.90 9.04 -37.75 -0.34 -11.24 16
16 H 0.09 2.01 7.91 -52.49 -0.41 1.60 16
17 C 0.07 1.71 5.14 -17.31 -0.09 1.62 16
18 N -0.77 -18.28 10.97 55.56 0.61 -17.68 16
19 Si 0.91 17.08 29.59 -169.99 -5.03 12.05 16
20 H -0.26 -4.79 7.11 56.52 0.40 -4.39 16
21 H -0.27 -5.02 7.11 56.52 0.40 -4.62 16
22 H -0.27 -4.94 7.11 56.52 0.40 -4.54 16
23 C -0.18 -4.28 8.63 -39.27 -0.34 -4.62 16
24 C -0.06 -1.36 9.47 -39.61 -0.38 -1.73 16
25 C -0.11 -1.29 0.93 -154.56 -0.14 -1.43 16
26 C -0.13 -1.39 7.46 -26.28 -0.20 -1.59 16
27 C -0.13 -1.33 8.08 -25.75 -0.21 -1.54 16
28 C -0.10 -1.10 7.56 -26.28 -0.20 -1.30 16
29 H 0.04 0.32 8.14 -51.93 -0.42 -0.10 16
30 H 0.04 0.35 8.14 -51.93 -0.42 -0.07 16
31 H 0.08 0.59 8.14 -51.93 -0.42 0.17 16
32 H 0.07 1.04 8.14 -51.93 -0.42 0.61 16
33 H 0.09 1.17 8.14 -51.93 -0.42 0.75 16
34 H 0.40 5.93 6.58 -40.82 -0.27 5.66 16
35 H 0.10 2.29 7.63 -52.49 -0.40 1.89 16
36 H 0.10 2.21 8.06 -52.48 -0.42 1.78 16
37 H 0.29 6.06 8.29 -40.82 -0.34 5.72 16
38 H 0.12 2.91 6.19 -52.49 -0.32 2.59 16
39 H 0.09 1.61 6.37 -52.48 -0.33 1.27 16
40 H 0.09 1.04 8.14 -51.93 -0.42 0.62 16
41 H 0.07 0.71 8.14 -51.93 -0.42 0.28 16
42 H 0.08 0.78 8.14 -51.93 -0.42 0.36 16
43 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16
44 H 0.08 0.83 7.66 -51.93 -0.40 0.43 16
45 H 0.08 0.86 8.14 -51.93 -0.42 0.43 16
LS Contribution 369.82 15.07 5.57 5.57
Total: -1.00 -27.82 369.82 -9.55 -37.37
By element:
Atomic # 1 Polarization: 19.19 SS G_CDS: -6.72 Total: 12.46 kcal
Atomic # 6 Polarization: -16.10 SS G_CDS: -3.44 Total: -19.55 kcal
Atomic # 7 Polarization: -30.18 SS G_CDS: 0.34 Total: -29.85 kcal
Atomic # 8 Polarization: -17.80 SS G_CDS: -0.27 Total: -18.07 kcal
Atomic # 14 Polarization: 17.08 SS G_CDS: -5.03 Total: 12.05 kcal
Total LS contribution 5.57 Total: 5.57 kcal
Total: -27.82 -9.55 -37.37 kcal
The number of atoms in the molecule is 45
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000458159804.mol2 45
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 11.743 kcal
(2) G-P(sol) polarization free energy of solvation -27.820 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.076 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.553 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.373 kcal
(6) G-S(sol) free energy of system = (1) + (5) -25.629 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 1.10 seconds