Wall clock time and date at job start Tue Mar 31 2020 11:29:59
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 O 1.42903 * 1
3 3 C 1.42899 * 114.00227 * 2 1
4 4 H 1.08999 * 112.88468 * 21.83599 * 3 2 1
5 5 C 1.53950 * 113.66125 * 250.49107 * 3 2 1
6 6 C 1.53947 * 87.29214 * 220.79045 * 5 3 2
7 7 H 1.09006 * 113.65774 * 139.30404 * 6 5 3
8 8 N 1.46505 * 113.66528 * 270.25882 * 6 5 3
9 9 C 1.34768 * 120.00219 * 253.99391 * 8 6 5
10 10 O 1.21594 * 120.00250 * 359.97438 * 9 8 6
11 11 C 1.47644 * 120.00189 * 179.97438 * 9 8 6
12 12 C 1.40009 * 119.89699 * 179.97438 * 11 9 8
13 13 C 1.36323 * 120.10381 * 179.97438 * 12 11 9
14 14 C 1.40887 * 119.89440 * 0.02978 * 13 12 11
15 15 C 1.41110 * 120.10345 * 179.97438 * 14 13 12
16 16 H 1.07997 * 119.99907 * 334.76579 * 15 14 13
17 17 C 1.40228 * 119.99675 * 155.04487 * 15 14 13
18 18 N 1.30651 * 120.00071 * 342.49843 * 17 15 14
19 19 Si 1.86798 * 119.99751 * 162.50194 * 17 15 14
20 20 H 1.48496 * 109.47274 * 359.97438 * 19 17 15
21 21 H 1.48510 * 109.47105 * 119.99774 * 19 17 15
22 22 H 1.48501 * 109.47092 * 239.99657 * 19 17 15
23 23 C 1.40885 * 119.79269 * 0.27122 * 14 13 12
24 24 C 1.36320 * 119.89027 * 359.42171 * 23 14 13
25 25 C 1.52906 * 86.88565 * 24.78004 * 6 5 3
26 26 C 1.52905 * 121.14081 * 209.32756 * 25 6 5
27 27 C 1.53953 * 86.78191 * 209.38131 * 26 25 6
28 28 C 1.52914 * 121.13289 * 100.76386 * 25 6 5
29 29 H 1.09001 * 109.47397 * 300.00411 * 1 2 3
30 30 H 1.09007 * 109.47001 * 60.00506 * 1 2 3
31 31 H 1.09000 * 109.47222 * 180.02562 * 1 2 3
32 32 H 1.09005 * 113.57696 * 106.18726 * 5 3 2
33 33 H 1.08995 * 113.65193 * 335.40779 * 5 3 2
34 34 H 0.96997 * 119.99132 * 73.99346 * 8 6 5
35 35 H 1.07998 * 119.94983 * 0.02802 * 12 11 9
36 36 H 1.08003 * 120.05116 * 180.02562 * 13 12 11
37 37 H 0.96995 * 119.99799 * 180.02562 * 18 17 15
38 38 H 1.08001 * 120.05718 * 179.72679 * 23 14 13
39 39 H 1.08003 * 119.95083 * 180.32136 * 24 23 14
40 40 H 1.08994 * 113.66425 * 323.85055 * 26 25 6
41 41 H 1.08996 * 113.65848 * 94.90957 * 26 25 6
42 42 H 1.09006 * 113.58053 * 270.13169 * 27 26 25
43 43 H 1.09003 * 113.65222 * 139.35738 * 27 26 25
44 44 H 1.08999 * 113.66468 * 265.09354 * 28 25 6
45 45 H 1.09003 * 113.66507 * 36.06779 * 28 25 6
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 8 1.4290 0.0000 0.0000
3 6 2.0103 1.3054 0.0000
4 1 1.3312 2.0718 0.3735
5 6 2.6918 1.6783 -1.3291
6 6 3.8159 2.3131 -0.4904
7 1 4.8149 2.1238 -0.8832
8 7 3.5869 3.7248 -0.1726
9 6 4.2936 4.6815 -0.8064
10 8 5.1216 4.3730 -1.6416
11 6 4.0624 6.1042 -0.4865
12 6 4.7982 7.0962 -1.1458
13 6 4.5877 8.4112 -0.8541
14 6 3.6285 8.7711 0.1129
15 6 3.4075 10.1309 0.4187
16 1 4.1913 10.8555 0.2546
17 6 2.1722 10.5402 0.9410
18 7 1.1269 9.7641 0.8309
19 14 2.0212 12.1950 1.7943
20 1 3.3400 12.8775 1.7879
21 1 1.0264 13.0327 1.0772
22 1 1.5770 11.9903 3.1964
23 6 2.8951 7.7690 0.7783
24 6 3.1080 6.4570 0.4754
25 6 3.4056 1.3573 0.6304
26 6 3.5985 1.7329 2.1000
27 6 3.7536 0.2260 2.3748
28 6 4.1965 0.0783 0.9077
29 1 -0.3634 0.5139 0.8899
30 1 -0.3633 0.5138 -0.8901
31 1 -0.3634 -1.0277 0.0005
32 1 2.1283 2.4000 -1.9206
33 1 3.0161 0.8158 -1.9113
34 1 2.9266 3.9708 0.4939
35 1 5.5330 6.8194 -1.8873
36 1 5.1555 9.1757 -1.3636
37 1 0.2724 10.0474 1.1919
38 1 2.1619 8.0399 1.5235
39 1 2.5426 5.6882 0.9811
40 1 4.5050 2.3076 2.2893
41 1 2.7130 2.1724 2.5590
42 1 2.8121 -0.2756 2.5987
43 1 4.5390 -0.0089 3.0932
44 1 3.7886 -0.8039 0.4144
45 1 5.2710 0.1877 0.7605
RHF calculation, no. of doubly occupied orbitals= 59
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000458159804.mol2 45
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 11:29:59
Heat of formation + Delta-G solvation = -39.825660 kcal
Electronic energy + Delta-G solvation = -25967.569085 eV
Core-core repulsion = 22336.233873 eV
Total energy + Delta-G solvation = -3631.335212 eV
No. of doubly occupied orbitals = 59
Molecular weight
(most abundant/longest-lived isotopes) = 315.162 amu
Computer time = 1.11 seconds
Orbital eigenvalues (eV)
-42.06360 -40.38469 -38.82721 -37.89479 -36.13655 -35.67004 -33.61606 -31.75280
-31.29458 -28.11473 -27.50405 -26.73654 -25.75679 -25.04041 -23.69383 -22.80710
-21.90643 -21.12982 -19.58275 -19.34768 -18.35434 -17.72243 -17.19946 -16.91015
-16.72342 -16.42241 -15.75430 -15.70869 -15.65068 -15.34768 -15.05451 -14.54936
-14.21319 -13.96832 -13.86877 -13.71119 -13.58798 -13.30719 -13.18871 -13.15532
-12.85927 -12.73764 -12.63132 -12.38443 -12.18306 -11.98890 -11.75986 -11.39273
-11.37061 -11.33722 -11.13274 -11.06808 -10.70830 -10.33052 -9.97245 -9.57851
-9.40372 -8.79786 -6.48791 0.42962 1.14467 1.38632 1.42137 1.55425
2.10741 2.17686 2.24659 2.77040 2.79507 3.30469 3.48475 3.67149
3.70655 3.78987 3.86026 3.94874 4.19863 4.25868 4.29706 4.43933
4.51233 4.53917 4.55567 4.59784 4.77151 4.85635 4.87955 4.89963
4.91642 4.92868 4.97055 5.03260 5.09122 5.15178 5.17669 5.29384
5.41509 5.55336 5.57369 5.63289 5.81899 5.93954 5.99090 6.22382
6.26760 6.53571 6.69266 6.76960 6.88370 7.43116 8.15818
Molecular weight = 315.16amu
Principal moments of inertia in cm(-1)
A = 0.018113 B = 0.002952 C = 0.002781
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1545.499740 B = 9484.155999 C =10065.008204
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C 0.023 3.977
2 O -0.383 6.383
3 C 0.097 3.903
4 H 0.095 0.905
5 C -0.165 4.165
6 C 0.130 3.870
7 H 0.085 0.915
8 N -0.703 5.703
9 C 0.575 3.425
10 O -0.604 6.604
11 C -0.292 4.292
12 C -0.032 4.032
13 C -0.253 4.253
14 C 0.103 3.897
15 C -0.473 4.473
16 H 0.084 0.916
17 C 0.039 3.961
18 N -0.798 5.798
19 Si 0.987 3.013
20 H -0.258 1.258
21 H -0.264 1.264
22 H -0.260 1.260
23 C -0.196 4.196
24 C -0.052 4.052
25 C -0.104 4.104
26 C -0.128 4.128
27 C -0.124 4.124
28 C -0.103 4.103
29 H 0.049 0.951
30 H 0.042 0.958
31 H 0.100 0.900
32 H 0.063 0.937
33 H 0.099 0.901
34 H 0.406 0.594
35 H 0.102 0.898
36 H 0.103 0.897
37 H 0.297 0.703
38 H 0.114 0.886
39 H 0.122 0.878
40 H 0.079 0.921
41 H 0.074 0.926
42 H 0.085 0.915
43 H 0.076 0.924
44 H 0.078 0.922
45 H 0.084 0.916
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -4.155 -14.939 5.237 16.366
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.073 4.073
2 O -0.301 6.301
3 C 0.039 3.961
4 H 0.113 0.887
5 C -0.204 4.204
6 C 0.024 3.976
7 H 0.103 0.897
8 N -0.353 5.353
9 C 0.369 3.631
10 O -0.488 6.488
11 C -0.297 4.297
12 C -0.052 4.052
13 C -0.273 4.273
14 C 0.099 3.901
15 C -0.501 4.501
16 H 0.102 0.898
17 C -0.180 4.180
18 N -0.422 5.422
19 Si 0.807 3.193
20 H -0.181 1.181
21 H -0.189 1.189
22 H -0.184 1.184
23 C -0.215 4.215
24 C -0.071 4.071
25 C -0.105 4.105
26 C -0.166 4.166
27 C -0.161 4.161
28 C -0.140 4.140
29 H 0.068 0.932
30 H 0.061 0.939
31 H 0.118 0.882
32 H 0.082 0.918
33 H 0.118 0.882
34 H 0.243 0.757
35 H 0.120 0.880
36 H 0.122 0.878
37 H 0.108 0.892
38 H 0.132 0.868
39 H 0.140 0.860
40 H 0.098 0.902
41 H 0.093 0.907
42 H 0.104 0.896
43 H 0.095 0.905
44 H 0.096 0.904
45 H 0.103 0.897
Dipole moment (debyes) X Y Z Total
from point charges -3.746 -15.365 4.701 16.499
hybrid contribution -0.566 1.247 0.101 1.373
sum -4.311 -14.118 4.802 15.523
Atomic orbital electron populations
1.22967 0.80012 1.03836 1.00526 1.87890 1.20844 1.26867 1.94524
1.23392 0.92423 0.85491 0.94815 0.88707 1.23938 0.97913 1.00864
0.97731 1.21476 0.99073 0.79997 0.97007 0.89709 1.45330 1.42049
1.04745 1.43172 1.18403 0.79215 0.86045 0.79409 1.90617 1.37690
1.84126 1.36415 1.19153 1.09046 0.91285 1.10189 1.20505 0.95917
0.92578 0.96158 1.20865 1.07080 0.95153 1.04159 1.18132 0.89598
0.94339 0.87981 1.20134 0.99491 0.94083 1.36345 0.89752 1.26909
0.94144 1.03458 0.93532 1.69760 1.01404 1.38942 1.32048 0.85074
0.79653 0.76116 0.78469 1.18139 1.18877 1.18385 1.20999 1.04775
0.92012 1.03738 1.20698 0.95047 0.96143 0.95226 1.23239 0.95501
0.97408 0.94341 1.22733 1.02385 0.97745 0.93715 1.22730 1.02054
0.95231 0.96113 1.22473 0.99110 0.95431 0.97027 0.93197 0.93943
0.88183 0.91800 0.88215 0.75692 0.88014 0.87844 0.89185 0.86821
0.85990 0.90215 0.90685 0.89638 0.90515 0.90376 0.89741
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 18.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C 0.02 0.34 10.86 113.37 1.23 1.57 16
2 O -0.38 -7.80 9.91 -148.98 -1.48 -9.28 16
3 C 0.10 2.06 4.10 30.98 0.13 2.19 16
4 H 0.10 1.89 7.90 -2.39 -0.02 1.87 16
5 C -0.17 -4.14 7.72 31.23 0.24 -3.90 16
6 C 0.13 3.66 4.09 45.28 0.19 3.84 16
7 H 0.08 2.74 7.50 -2.38 -0.02 2.72 16
8 N -0.70 -22.55 5.01 -444.20 -2.22 -24.78 16
9 C 0.58 24.14 7.76 86.73 0.67 24.81 16
10 O -0.60 -28.96 15.94 -4.01 -0.06 -29.02 16
11 C -0.29 -13.24 5.89 -19.93 -0.12 -13.36 16
12 C -0.03 -1.55 9.52 22.25 0.21 -1.34 16
13 C -0.25 -12.54 9.73 22.47 0.22 -12.32 16
14 C 0.10 5.29 5.57 -21.28 -0.12 5.17 16
15 C -0.47 -23.73 9.04 23.46 0.21 -23.52 16
16 H 0.08 4.08 7.91 -2.91 -0.02 4.06 16
17 C 0.04 1.77 5.14 85.35 0.44 2.21 16
18 N -0.80 -37.58 10.97 21.87 0.24 -37.34 16
19 Si 0.99 34.38 29.59 68.60 2.03 36.41 16
20 H -0.26 -8.93 7.11 99.48 0.71 -8.22 16
21 H -0.26 -8.84 7.11 99.48 0.71 -8.14 16
22 H -0.26 -8.60 7.11 99.48 0.71 -7.89 16
23 C -0.20 -9.53 8.63 22.47 0.19 -9.34 16
24 C -0.05 -2.25 9.47 22.25 0.21 -2.04 16
25 C -0.10 -2.26 0.93 -52.21 -0.05 -2.31 16
26 C -0.13 -2.55 7.46 30.88 0.23 -2.32 16
27 C -0.12 -2.11 8.08 31.23 0.25 -1.86 16
28 C -0.10 -1.99 7.56 30.89 0.23 -1.75 16
29 H 0.05 0.66 8.14 -2.39 -0.02 0.64 16
30 H 0.04 0.62 8.14 -2.38 -0.02 0.61 16
31 H 0.10 1.15 8.14 -2.39 -0.02 1.13 16
32 H 0.06 1.73 8.14 -2.38 -0.02 1.71 16
33 H 0.10 2.38 8.14 -2.39 -0.02 2.36 16
34 H 0.41 11.42 6.58 -92.71 -0.61 10.81 16
35 H 0.10 4.77 7.63 -2.91 -0.02 4.75 16
36 H 0.10 4.83 8.06 -2.91 -0.02 4.80 16
37 H 0.30 12.35 8.29 -92.71 -0.77 11.58 16
38 H 0.11 5.59 6.19 -2.91 -0.02 5.58 16
39 H 0.12 4.26 6.37 -2.91 -0.02 4.24 16
40 H 0.08 1.74 8.14 -2.39 -0.02 1.72 16
41 H 0.07 1.38 8.14 -2.39 -0.02 1.36 16
42 H 0.09 1.40 8.14 -2.38 -0.02 1.38 16
43 H 0.08 1.16 8.14 -2.39 -0.02 1.14 16
44 H 0.08 1.52 7.66 -2.39 -0.02 1.50 16
45 H 0.08 1.62 8.14 -2.39 -0.02 1.60 16
Total: -1.00 -60.24 369.82 3.27 -56.97
By element:
Atomic # 1 Polarization: 40.92 SS G_CDS: 0.39 Total: 41.30 kcal
Atomic # 6 Polarization: -38.64 SS G_CDS: 4.38 Total: -34.26 kcal
Atomic # 7 Polarization: -60.14 SS G_CDS: -1.98 Total: -62.12 kcal
Atomic # 8 Polarization: -36.76 SS G_CDS: -1.54 Total: -38.30 kcal
Atomic # 14 Polarization: 34.38 SS G_CDS: 2.03 Total: 36.41 kcal
Total: -60.24 3.27 -56.97 kcal
The number of atoms in the molecule is 45
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000458159804.mol2 45
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 17.142 kcal
(2) G-P(sol) polarization free energy of solvation -60.236 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.094 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.268 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.968 kcal
(6) G-S(sol) free energy of system = (1) + (5) -39.826 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 1.11 seconds