Wall clock time and date at job start Tue Mar 31 2020 11:30:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.42901 * 114.00105 * 2 1 4 4 H 1.08997 * 112.88309 * 338.16597 * 3 2 1 5 5 C 1.53949 * 113.65866 * 109.50503 * 3 2 1 6 6 C 1.53953 * 87.29457 * 89.73899 * 5 3 2 7 7 H 1.09001 * 113.66374 * 139.29507 * 6 5 3 8 8 N 1.46499 * 113.66332 * 270.26050 * 6 5 3 9 9 C 1.34779 * 120.00000 * 255.49392 * 8 6 5 10 10 O 1.21555 * 119.99917 * 0.02562 * 9 8 6 11 11 C 1.47886 * 119.99960 * 179.97438 * 9 8 6 12 12 C 1.39919 * 120.02307 * 0.02562 * 11 9 8 13 13 C 1.38331 * 120.35270 * 179.97438 * 12 11 9 14 14 C 1.37755 * 120.41436 * 359.72023 * 13 12 11 15 15 C 1.40746 * 120.03845 * 0.55819 * 14 13 12 16 16 C 1.41431 * 120.17944 * 179.71855 * 15 14 13 17 17 H 1.08005 * 120.00029 * 334.48730 * 16 15 14 18 18 C 1.39937 * 120.00349 * 154.48538 * 16 15 14 19 19 N 1.30818 * 119.99732 * 334.36872 * 18 16 15 20 20 Si 1.86803 * 119.99973 * 154.09125 * 18 16 15 21 21 H 1.48504 * 109.47296 * 0.02562 * 20 18 16 22 22 H 1.48492 * 109.47111 * 120.00099 * 20 18 16 23 23 H 1.48505 * 109.46873 * 240.00378 * 20 18 16 24 24 C 1.38999 * 120.02360 * 180.02562 * 11 9 8 25 25 C 1.52905 * 86.78283 * 24.73488 * 6 5 3 26 26 C 1.52913 * 121.14178 * 209.38270 * 25 6 5 27 27 C 1.53951 * 86.78425 * 209.37176 * 26 25 6 28 28 C 1.52905 * 121.14513 * 100.81277 * 25 6 5 29 29 H 1.09001 * 109.46914 * 299.99324 * 1 2 3 30 30 H 1.08995 * 109.46953 * 59.99763 * 1 2 3 31 31 H 1.09003 * 109.46820 * 179.97438 * 1 2 3 32 32 H 1.08999 * 113.58405 * 335.13603 * 5 3 2 33 33 H 1.09001 * 113.57696 * 204.34102 * 5 3 2 34 34 H 0.96996 * 119.99735 * 75.48979 * 8 6 5 35 35 H 1.07997 * 119.82169 * 0.02562 * 12 11 9 36 36 H 1.08001 * 119.79205 * 180.02562 * 13 12 11 37 37 H 1.07997 * 119.98181 * 180.28077 * 14 13 12 38 38 H 0.96997 * 120.00402 * 353.95424 * 19 18 16 39 39 H 1.07998 * 120.19849 * 0.04073 * 24 11 9 40 40 H 1.08997 * 113.65984 * 323.84447 * 26 25 6 41 41 H 1.08997 * 113.66024 * 94.89957 * 26 25 6 42 42 H 1.09001 * 113.58149 * 270.13310 * 27 26 25 43 43 H 1.08994 * 113.65256 * 139.34241 * 27 26 25 44 44 H 1.08997 * 113.66692 * 265.10641 * 28 25 6 45 45 H 1.09002 * 113.65817 * 36.15402 * 28 25 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 1 1.3311 2.0718 -0.3735 5 6 2.6916 1.6783 1.3292 6 6 3.9819 1.0649 0.7556 7 1 4.8794 1.6389 0.9862 8 7 4.1309 -0.3643 1.0410 9 6 4.9980 -0.7758 1.9872 10 8 5.6562 0.0389 2.6040 11 6 5.1479 -2.2185 2.2756 12 6 4.3902 -3.1567 1.5662 13 6 4.5254 -4.5079 1.8301 14 6 5.4112 -4.9458 2.7898 15 6 6.1777 -4.0164 3.5177 16 6 7.0837 -4.4624 4.5079 17 1 6.9210 -5.4090 5.0018 18 6 8.1911 -3.6773 4.8476 19 7 8.6855 -2.8330 3.9792 20 14 8.9587 -3.8293 6.5439 21 1 8.2153 -4.8428 7.3347 22 1 10.3766 -4.2495 6.4097 23 1 8.8947 -2.5167 7.2356 24 6 6.0417 -2.6434 3.2517 25 6 3.4030 1.3572 -0.6291 26 6 3.7588 0.4866 -1.8348 27 6 3.5447 1.7443 -2.6965 28 6 3.8607 2.5718 -1.4373 29 1 -0.3633 0.5137 0.8901 30 1 -0.3633 0.5138 -0.8899 31 1 -0.3633 -1.0277 -0.0005 32 1 2.2962 1.1372 2.1888 33 1 2.7577 2.7530 1.4988 34 1 3.6053 -1.0144 0.5490 35 1 3.6967 -2.8243 0.8080 36 1 3.9362 -5.2243 1.2768 37 1 5.5144 -6.0026 2.9870 38 1 8.3417 -2.8129 3.0724 39 1 6.6281 -1.9226 3.8021 40 1 4.7890 0.1307 -1.8286 41 1 3.0364 -0.3059 -2.0305 42 1 2.5202 1.8618 -3.0496 43 1 4.2818 1.8606 -3.4910 44 1 3.2200 3.4451 -1.3155 45 1 4.9196 2.8018 -1.3194 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000458182944.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:30:07 Heat of formation + Delta-G solvation = -24.638840 kcal Electronic energy + Delta-G solvation = -26487.452651 eV Core-core repulsion = 22856.775990 eV Total energy + Delta-G solvation = -3630.676662 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 315.162 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -41.11690 -38.87062 -37.21178 -37.09634 -34.83501 -33.93124 -32.24042 -29.91641 -29.25613 -27.08231 -25.84839 -25.23476 -24.86999 -24.36140 -22.49570 -21.03908 -20.69114 -19.59910 -18.63620 -18.07908 -16.76816 -16.33705 -15.92310 -15.65211 -15.53344 -14.88432 -14.61431 -14.32936 -14.15055 -14.02458 -13.70761 -13.63010 -13.00029 -12.69378 -12.54701 -12.44673 -12.30349 -12.16010 -12.01216 -11.86302 -11.37774 -11.23488 -11.17152 -10.89704 -10.61871 -10.52544 -10.39107 -10.37712 -10.13915 -10.10448 -9.60039 -9.52034 -9.07232 -8.96229 -8.55528 -7.76572 -7.66864 -7.17477 -4.45471 2.13021 2.77014 3.19026 3.22208 3.26972 3.37931 3.72340 3.82027 4.04857 4.35107 4.41061 4.56035 4.60719 4.61512 4.75175 4.87685 4.99510 5.15054 5.21940 5.27016 5.46592 5.46868 5.50564 5.56325 5.61662 5.64839 5.69980 5.75869 5.92403 5.99745 6.02166 6.09431 6.19671 6.24130 6.32807 6.63722 6.88699 6.91893 6.98393 7.09444 7.24504 7.55311 7.69471 7.74203 7.76633 8.06941 8.17084 8.27250 8.67132 8.85135 8.94675 10.06636 Molecular weight = 315.16amu Principal moments of inertia in cm(-1) A = 0.019252 B = 0.003378 C = 0.003173 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1454.028591 B = 8286.572616 C = 8823.067496 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.362 6.362 3 C 0.090 3.910 4 H 0.072 0.928 5 C -0.175 4.175 6 C 0.146 3.854 7 H 0.098 0.902 8 N -0.706 5.706 9 C 0.563 3.437 10 O -0.548 6.548 11 C -0.106 4.106 12 C -0.225 4.225 13 C -0.088 4.088 14 C -0.213 4.213 15 C 0.085 3.915 16 C -0.520 4.520 17 H 0.078 0.922 18 C 0.036 3.964 19 N -0.788 5.788 20 Si 1.070 2.930 21 H -0.276 1.276 22 H -0.278 1.278 23 H -0.273 1.273 24 C -0.150 4.150 25 C -0.116 4.116 26 C -0.120 4.120 27 C -0.139 4.139 28 C -0.105 4.105 29 H 0.041 0.959 30 H 0.039 0.961 31 H 0.087 0.913 32 H 0.079 0.921 33 H 0.095 0.905 34 H 0.406 0.594 35 H 0.093 0.907 36 H 0.094 0.906 37 H 0.096 0.904 38 H 0.300 0.700 39 H 0.121 0.879 40 H 0.085 0.915 41 H 0.074 0.926 42 H 0.077 0.923 43 H 0.068 0.932 44 H 0.070 0.930 45 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.766 8.826 -10.662 18.830 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 O -0.281 6.281 3 C 0.032 3.968 4 H 0.090 0.910 5 C -0.214 4.214 6 C 0.039 3.961 7 H 0.116 0.884 8 N -0.358 5.358 9 C 0.353 3.647 10 O -0.427 6.427 11 C -0.109 4.109 12 C -0.245 4.245 13 C -0.107 4.107 14 C -0.233 4.233 15 C 0.082 3.918 16 C -0.548 4.548 17 H 0.097 0.903 18 C -0.186 4.186 19 N -0.410 5.410 20 Si 0.894 3.106 21 H -0.201 1.201 22 H -0.204 1.204 23 H -0.198 1.198 24 C -0.170 4.170 25 C -0.117 4.117 26 C -0.157 4.157 27 C -0.177 4.177 28 C -0.143 4.143 29 H 0.060 0.940 30 H 0.058 0.942 31 H 0.106 0.894 32 H 0.098 0.902 33 H 0.113 0.887 34 H 0.243 0.757 35 H 0.111 0.889 36 H 0.112 0.888 37 H 0.114 0.886 38 H 0.114 0.886 39 H 0.139 0.861 40 H 0.104 0.896 41 H 0.093 0.907 42 H 0.095 0.905 43 H 0.087 0.913 44 H 0.088 0.912 45 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -10.974 9.895 -9.275 17.446 hybrid contribution -1.857 -0.738 -1.289 2.378 sum -12.830 9.157 -10.564 18.976 Atomic orbital electron populations 1.22794 0.80856 1.02915 0.99752 1.87853 1.19603 1.26142 1.94454 1.22768 0.92828 0.85172 0.96019 0.90961 1.23985 0.97987 1.01406 0.98040 1.21435 0.97738 0.83505 0.93382 0.88426 1.45503 1.43511 1.06496 1.40308 1.18853 0.78042 0.89424 0.78376 1.90697 1.46143 1.55673 1.50140 1.19412 1.00800 0.90217 1.00472 1.20351 1.05685 0.93119 1.05337 1.20484 0.97892 0.94547 0.97737 1.21068 1.03913 0.97824 1.00511 1.17645 0.92303 0.90802 0.91008 1.20597 1.08176 1.07266 1.18716 0.90342 1.27063 0.94939 0.91409 1.05237 1.70400 1.35840 1.28439 1.06334 0.83577 0.76157 0.77646 0.73229 1.20110 1.20358 1.19812 1.21427 1.00396 0.95874 0.99324 1.23140 0.95405 0.99292 0.93890 1.22556 1.02315 0.96691 0.94186 1.22840 1.01537 0.96782 0.96521 1.22569 1.01867 0.95154 0.94671 0.94029 0.94189 0.89419 0.90220 0.88709 0.75733 0.88862 0.88777 0.88585 0.88627 0.86138 0.89608 0.90687 0.90472 0.91322 0.91161 0.89063 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.29 10.86 101.05 1.10 1.39 16 2 O -0.36 -4.32 9.10 -35.23 -0.32 -4.64 16 3 C 0.09 0.98 4.15 -26.28 -0.11 0.87 16 4 H 0.07 0.64 7.90 -51.93 -0.41 0.23 16 5 C -0.18 -2.20 7.72 -25.75 -0.20 -2.40 16 6 C 0.15 2.16 4.08 -67.48 -0.28 1.89 16 7 H 0.10 1.60 7.54 -51.93 -0.39 1.21 16 8 N -0.71 -12.45 4.90 -54.30 -0.27 -12.72 16 9 C 0.56 12.68 7.77 -12.31 -0.10 12.59 16 10 O -0.55 -14.06 15.97 5.32 0.08 -13.97 16 11 C -0.11 -2.55 5.87 -105.04 -0.62 -3.17 16 12 C -0.22 -4.87 9.55 -38.92 -0.37 -5.24 16 13 C -0.09 -1.92 10.01 -39.72 -0.40 -2.32 16 14 C -0.21 -5.17 9.78 -38.81 -0.38 -5.55 16 15 C 0.09 2.29 5.30 -106.88 -0.57 1.72 16 16 C -0.52 -13.98 8.98 -37.73 -0.34 -14.32 16 17 H 0.08 2.03 7.97 -52.48 -0.42 1.62 16 18 C 0.04 0.94 4.93 -17.35 -0.09 0.86 16 19 N -0.79 -21.83 12.30 55.55 0.68 -21.15 16 20 Si 1.07 22.30 30.00 -169.99 -5.10 17.20 16 21 H -0.28 -5.44 7.11 56.52 0.40 -5.04 16 22 H -0.28 -5.57 7.11 56.52 0.40 -5.16 16 23 H -0.27 -5.66 7.11 56.52 0.40 -5.25 16 24 C -0.15 -4.05 7.50 -38.44 -0.29 -4.34 16 25 C -0.12 -1.31 0.83 -154.71 -0.13 -1.44 16 26 C -0.12 -1.33 7.30 -26.28 -0.19 -1.52 16 27 C -0.14 -1.21 8.08 -25.75 -0.21 -1.42 16 28 C -0.10 -0.95 7.84 -26.28 -0.21 -1.16 16 29 H 0.04 0.34 8.14 -51.93 -0.42 -0.08 16 30 H 0.04 0.28 8.14 -51.93 -0.42 -0.14 16 31 H 0.09 0.69 8.14 -51.93 -0.42 0.27 16 32 H 0.08 1.15 8.14 -51.93 -0.42 0.73 16 33 H 0.09 1.00 8.14 -51.93 -0.42 0.58 16 34 H 0.41 6.73 5.61 -40.82 -0.23 6.50 16 35 H 0.09 1.74 6.38 -52.49 -0.33 1.41 16 36 H 0.09 1.74 8.06 -52.49 -0.42 1.32 16 37 H 0.10 2.18 8.06 -52.49 -0.42 1.76 16 38 H 0.30 8.59 6.71 -40.82 -0.27 8.31 16 39 H 0.12 3.53 6.06 -52.49 -0.32 3.21 16 40 H 0.09 1.04 8.14 -51.93 -0.42 0.62 16 41 H 0.07 0.85 7.83 -51.93 -0.41 0.44 16 42 H 0.08 0.61 8.14 -51.93 -0.42 0.19 16 43 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 44 H 0.07 0.54 8.14 -51.93 -0.42 0.11 16 45 H 0.09 0.84 8.14 -51.93 -0.42 0.42 16 LS Contribution 367.68 15.07 5.54 5.54 Total: -1.00 -30.52 367.68 -9.39 -39.91 By element: Atomic # 1 Polarization: 20.02 SS G_CDS: -6.65 Total: 13.37 kcal Atomic # 6 Polarization: -20.19 SS G_CDS: -3.36 Total: -23.55 kcal Atomic # 7 Polarization: -34.28 SS G_CDS: 0.42 Total: -33.87 kcal Atomic # 8 Polarization: -18.37 SS G_CDS: -0.24 Total: -18.61 kcal Atomic # 14 Polarization: 22.30 SS G_CDS: -5.10 Total: 17.20 kcal Total LS contribution 5.54 Total: 5.54 kcal Total: -30.52 -9.39 -39.91 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000458182944.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.274 kcal (2) G-P(sol) polarization free energy of solvation -30.524 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.250 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.389 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.913 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.639 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds