Wall clock time and date at job start Tue Mar 31 2020 11:30:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.42901 * 114.00105 * 2 1 4 4 H 1.08997 * 112.88309 * 338.16597 * 3 2 1 5 5 C 1.53949 * 113.65866 * 109.50503 * 3 2 1 6 6 C 1.53953 * 87.29457 * 89.73899 * 5 3 2 7 7 H 1.09001 * 113.66374 * 139.29507 * 6 5 3 8 8 N 1.46499 * 113.66332 * 270.26050 * 6 5 3 9 9 C 1.34779 * 120.00000 * 255.49392 * 8 6 5 10 10 O 1.21555 * 119.99917 * 0.02562 * 9 8 6 11 11 C 1.47886 * 119.99960 * 179.97438 * 9 8 6 12 12 C 1.39919 * 120.02307 * 0.02562 * 11 9 8 13 13 C 1.38331 * 120.35270 * 179.97438 * 12 11 9 14 14 C 1.37755 * 120.41436 * 359.72023 * 13 12 11 15 15 C 1.40746 * 120.03845 * 0.55819 * 14 13 12 16 16 C 1.41431 * 120.17944 * 179.71855 * 15 14 13 17 17 H 1.08005 * 120.00029 * 334.48730 * 16 15 14 18 18 C 1.39937 * 120.00349 * 154.48538 * 16 15 14 19 19 N 1.30818 * 119.99732 * 334.36872 * 18 16 15 20 20 Si 1.86803 * 119.99973 * 154.09125 * 18 16 15 21 21 H 1.48504 * 109.47296 * 0.02562 * 20 18 16 22 22 H 1.48492 * 109.47111 * 120.00099 * 20 18 16 23 23 H 1.48505 * 109.46873 * 240.00378 * 20 18 16 24 24 C 1.38999 * 120.02360 * 180.02562 * 11 9 8 25 25 C 1.52905 * 86.78283 * 24.73488 * 6 5 3 26 26 C 1.52913 * 121.14178 * 209.38270 * 25 6 5 27 27 C 1.53951 * 86.78425 * 209.37176 * 26 25 6 28 28 C 1.52905 * 121.14513 * 100.81277 * 25 6 5 29 29 H 1.09001 * 109.46914 * 299.99324 * 1 2 3 30 30 H 1.08995 * 109.46953 * 59.99763 * 1 2 3 31 31 H 1.09003 * 109.46820 * 179.97438 * 1 2 3 32 32 H 1.08999 * 113.58405 * 335.13603 * 5 3 2 33 33 H 1.09001 * 113.57696 * 204.34102 * 5 3 2 34 34 H 0.96996 * 119.99735 * 75.48979 * 8 6 5 35 35 H 1.07997 * 119.82169 * 0.02562 * 12 11 9 36 36 H 1.08001 * 119.79205 * 180.02562 * 13 12 11 37 37 H 1.07997 * 119.98181 * 180.28077 * 14 13 12 38 38 H 0.96997 * 120.00402 * 353.95424 * 19 18 16 39 39 H 1.07998 * 120.19849 * 0.04073 * 24 11 9 40 40 H 1.08997 * 113.65984 * 323.84447 * 26 25 6 41 41 H 1.08997 * 113.66024 * 94.89957 * 26 25 6 42 42 H 1.09001 * 113.58149 * 270.13310 * 27 26 25 43 43 H 1.08994 * 113.65256 * 139.34241 * 27 26 25 44 44 H 1.08997 * 113.66692 * 265.10641 * 28 25 6 45 45 H 1.09002 * 113.65817 * 36.15402 * 28 25 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 1 1.3311 2.0718 -0.3735 5 6 2.6916 1.6783 1.3292 6 6 3.9819 1.0649 0.7556 7 1 4.8794 1.6389 0.9862 8 7 4.1309 -0.3643 1.0410 9 6 4.9980 -0.7758 1.9872 10 8 5.6562 0.0389 2.6040 11 6 5.1479 -2.2185 2.2756 12 6 4.3902 -3.1567 1.5662 13 6 4.5254 -4.5079 1.8301 14 6 5.4112 -4.9458 2.7898 15 6 6.1777 -4.0164 3.5177 16 6 7.0837 -4.4624 4.5079 17 1 6.9210 -5.4090 5.0018 18 6 8.1911 -3.6773 4.8476 19 7 8.6855 -2.8330 3.9792 20 14 8.9587 -3.8293 6.5439 21 1 8.2153 -4.8428 7.3347 22 1 10.3766 -4.2495 6.4097 23 1 8.8947 -2.5167 7.2356 24 6 6.0417 -2.6434 3.2517 25 6 3.4030 1.3572 -0.6291 26 6 3.7588 0.4866 -1.8348 27 6 3.5447 1.7443 -2.6965 28 6 3.8607 2.5718 -1.4373 29 1 -0.3633 0.5137 0.8901 30 1 -0.3633 0.5138 -0.8899 31 1 -0.3633 -1.0277 -0.0005 32 1 2.2962 1.1372 2.1888 33 1 2.7577 2.7530 1.4988 34 1 3.6053 -1.0144 0.5490 35 1 3.6967 -2.8243 0.8080 36 1 3.9362 -5.2243 1.2768 37 1 5.5144 -6.0026 2.9870 38 1 8.3417 -2.8129 3.0724 39 1 6.6281 -1.9226 3.8021 40 1 4.7890 0.1307 -1.8286 41 1 3.0364 -0.3059 -2.0305 42 1 2.5202 1.8618 -3.0496 43 1 4.2818 1.8606 -3.4910 44 1 3.2200 3.4451 -1.3155 45 1 4.9196 2.8018 -1.3194 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000458182944.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:30:06 Heat of formation + Delta-G solvation = -42.381906 kcal Electronic energy + Delta-G solvation = -26488.222049 eV Core-core repulsion = 22856.775990 eV Total energy + Delta-G solvation = -3631.446059 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 315.162 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -42.15886 -40.58191 -38.96531 -38.00116 -36.09352 -35.81200 -33.69083 -31.74166 -31.18962 -27.81501 -27.18847 -26.64140 -25.94956 -25.40245 -24.06473 -22.85794 -21.86936 -21.27923 -20.15209 -19.40091 -18.13677 -17.51297 -17.13995 -16.79151 -16.67351 -16.36644 -16.00505 -15.88715 -15.78575 -15.56401 -15.29118 -14.65476 -14.58735 -14.19923 -13.97787 -13.84511 -13.36369 -13.27224 -13.11432 -13.01015 -12.85925 -12.70980 -12.44797 -12.19711 -12.05642 -12.00698 -11.97027 -11.50269 -11.41199 -11.24083 -11.10649 -10.93144 -10.82008 -10.38646 -10.05916 -9.66519 -9.62112 -9.20562 -6.51736 0.21559 0.85676 1.47071 1.57633 1.76130 2.00354 2.05132 2.30931 2.64544 2.69873 3.37072 3.48055 3.52062 3.73539 3.77528 3.83427 3.92376 3.96379 4.25279 4.27425 4.42313 4.46578 4.52240 4.59345 4.62829 4.68739 4.73040 4.79891 4.85453 4.88839 4.90695 4.94417 4.96315 5.02467 5.08460 5.13123 5.27862 5.36270 5.52720 5.54358 5.58345 5.70797 5.77453 5.79479 6.13572 6.23011 6.29223 6.60364 6.66917 6.88618 7.23409 8.00082 Molecular weight = 315.16amu Principal moments of inertia in cm(-1) A = 0.019252 B = 0.003378 C = 0.003173 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1454.028591 B = 8286.572616 C = 8823.067496 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.387 6.387 3 C 0.103 3.897 4 H 0.105 0.895 5 C -0.172 4.172 6 C 0.119 3.881 7 H 0.073 0.927 8 N -0.682 5.682 9 C 0.557 3.443 10 O -0.591 6.591 11 C -0.118 4.118 12 C -0.202 4.202 13 C -0.083 4.083 14 C -0.216 4.216 15 C 0.059 3.941 16 C -0.556 4.556 17 H 0.081 0.919 18 C -0.002 4.002 19 N -0.818 5.818 20 Si 1.120 2.880 21 H -0.256 1.256 22 H -0.262 1.262 23 H -0.274 1.274 24 C -0.181 4.181 25 C -0.109 4.109 26 C -0.128 4.128 27 C -0.125 4.125 28 C -0.101 4.101 29 H 0.044 0.956 30 H 0.060 0.940 31 H 0.093 0.907 32 H 0.057 0.943 33 H 0.117 0.883 34 H 0.413 0.587 35 H 0.132 0.868 36 H 0.142 0.858 37 H 0.110 0.890 38 H 0.280 0.720 39 H 0.083 0.917 40 H 0.066 0.934 41 H 0.074 0.926 42 H 0.095 0.905 43 H 0.076 0.924 44 H 0.094 0.906 45 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.669 9.015 -12.718 22.103 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.305 6.305 3 C 0.045 3.955 4 H 0.123 0.877 5 C -0.211 4.211 6 C 0.013 3.987 7 H 0.091 0.909 8 N -0.333 5.333 9 C 0.347 3.653 10 O -0.473 6.473 11 C -0.121 4.121 12 C -0.221 4.221 13 C -0.101 4.101 14 C -0.236 4.236 15 C 0.057 3.943 16 C -0.584 4.584 17 H 0.099 0.901 18 C -0.217 4.217 19 N -0.441 5.441 20 Si 0.937 3.063 21 H -0.180 1.180 22 H -0.187 1.187 23 H -0.200 1.200 24 C -0.202 4.202 25 C -0.110 4.110 26 C -0.166 4.166 27 C -0.162 4.162 28 C -0.138 4.138 29 H 0.062 0.938 30 H 0.079 0.921 31 H 0.111 0.889 32 H 0.076 0.924 33 H 0.135 0.865 34 H 0.251 0.749 35 H 0.150 0.850 36 H 0.160 0.840 37 H 0.128 0.872 38 H 0.092 0.908 39 H 0.101 0.899 40 H 0.085 0.915 41 H 0.092 0.908 42 H 0.114 0.886 43 H 0.094 0.906 44 H 0.112 0.888 45 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -13.932 10.075 -11.386 20.622 hybrid contribution -1.154 -0.804 -0.817 1.626 sum -15.086 9.270 -12.203 21.504 Atomic orbital electron populations 1.22976 0.79198 1.03764 1.00906 1.87811 1.21499 1.26787 1.94450 1.22710 0.93013 0.85756 0.94069 0.87694 1.24018 0.96404 1.02286 0.98383 1.21825 0.98137 0.81359 0.97356 0.90906 1.45308 1.41498 1.08300 1.38192 1.18764 0.78693 0.88665 0.79171 1.90669 1.48163 1.56414 1.52093 1.19723 1.00454 0.91907 1.00051 1.20811 1.04219 0.92831 1.04263 1.20972 0.97034 0.95401 0.96716 1.21385 1.03568 0.98189 1.00473 1.17969 0.93237 0.91251 0.91877 1.20806 1.09219 1.08076 1.20316 0.90129 1.28526 0.95060 0.90225 1.07917 1.70521 1.37143 1.30606 1.05822 0.83000 0.76361 0.78004 0.68941 1.17992 1.18679 1.19968 1.21207 1.02133 0.95568 1.01291 1.23203 0.95183 1.00873 0.91692 1.22578 1.01171 0.97790 0.95057 1.22803 1.02837 0.94438 0.96164 1.22609 1.02019 0.95209 0.93986 0.93759 0.92096 0.88871 0.92432 0.86493 0.74876 0.85034 0.83991 0.87158 0.90781 0.89864 0.91493 0.90754 0.88649 0.90563 0.88771 0.89722 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.39 10.86 113.37 1.23 1.62 16 2 O -0.39 -8.06 9.10 -148.98 -1.36 -9.41 16 3 C 0.10 1.91 4.15 30.89 0.13 2.04 16 4 H 0.11 1.34 7.90 -2.39 -0.02 1.32 16 5 C -0.17 -4.11 7.72 31.23 0.24 -3.87 16 6 C 0.12 3.50 4.08 45.28 0.18 3.69 16 7 H 0.07 2.50 7.54 -2.39 -0.02 2.49 16 8 N -0.68 -24.11 4.90 -443.98 -2.17 -26.29 16 9 C 0.56 26.11 7.77 86.80 0.67 26.78 16 10 O -0.59 -32.37 15.97 -3.89 -0.06 -32.44 16 11 C -0.12 -5.84 5.87 -20.13 -0.12 -5.96 16 12 C -0.20 -8.35 9.55 22.70 0.22 -8.13 16 13 C -0.08 -3.40 10.01 22.18 0.22 -3.18 16 14 C -0.22 -10.37 9.78 22.77 0.22 -10.15 16 15 C 0.06 3.30 5.30 -21.32 -0.11 3.19 16 16 C -0.56 -31.24 8.98 23.47 0.21 -31.02 16 17 H 0.08 4.32 7.97 -2.91 -0.02 4.29 16 18 C 0.00 -0.08 4.93 85.26 0.42 0.34 16 19 N -0.82 -48.39 12.30 21.82 0.27 -48.12 16 20 Si 1.12 46.33 30.00 68.60 2.06 48.39 16 21 H -0.26 -9.64 7.11 99.48 0.71 -8.93 16 22 H -0.26 -10.09 7.11 99.48 0.71 -9.38 16 23 H -0.27 -11.30 7.11 99.48 0.71 -10.60 16 24 C -0.18 -10.37 7.50 23.01 0.17 -10.19 16 25 C -0.11 -2.21 0.83 -52.31 -0.04 -2.26 16 26 C -0.13 -2.57 7.30 30.89 0.23 -2.35 16 27 C -0.13 -1.75 8.08 31.23 0.25 -1.50 16 28 C -0.10 -1.54 7.84 30.88 0.24 -1.29 16 29 H 0.04 0.59 8.14 -2.39 -0.02 0.57 16 30 H 0.06 0.61 8.14 -2.39 -0.02 0.59 16 31 H 0.09 1.19 8.14 -2.39 -0.02 1.17 16 32 H 0.06 1.63 8.14 -2.39 -0.02 1.61 16 33 H 0.12 2.24 8.14 -2.39 -0.02 2.22 16 34 H 0.41 13.14 5.61 -92.71 -0.52 12.62 16 35 H 0.13 4.42 6.38 -2.91 -0.02 4.40 16 36 H 0.14 4.50 8.06 -2.91 -0.02 4.47 16 37 H 0.11 4.89 8.06 -2.91 -0.02 4.86 16 38 H 0.28 17.38 6.71 -92.71 -0.62 16.76 16 39 H 0.08 5.32 6.06 -2.91 -0.02 5.30 16 40 H 0.07 1.59 8.14 -2.39 -0.02 1.57 16 41 H 0.07 1.50 7.83 -2.39 -0.02 1.48 16 42 H 0.10 1.04 8.14 -2.39 -0.02 1.02 16 43 H 0.08 0.99 8.14 -2.39 -0.02 0.97 16 44 H 0.09 1.03 8.14 -2.39 -0.02 1.01 16 45 H 0.08 1.43 8.14 -2.39 -0.02 1.41 16 Total: -1.00 -72.61 367.68 3.73 -68.88 By element: Atomic # 1 Polarization: 40.61 SS G_CDS: 0.62 Total: 41.23 kcal Atomic # 6 Polarization: -46.61 SS G_CDS: 4.37 Total: -42.24 kcal Atomic # 7 Polarization: -72.50 SS G_CDS: -1.91 Total: -74.41 kcal Atomic # 8 Polarization: -40.43 SS G_CDS: -1.42 Total: -41.85 kcal Atomic # 14 Polarization: 46.33 SS G_CDS: 2.06 Total: 48.39 kcal Total: -72.61 3.73 -68.88 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000458182944.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.499 kcal (2) G-P(sol) polarization free energy of solvation -72.609 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.110 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.728 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.881 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.382 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds