Wall clock time and date at job start Tue Mar 31 2020 11:30:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.42903 * 114.00097 * 2 1 4 4 H 1.09000 * 112.94825 * 338.09332 * 3 2 1 5 5 C 1.53945 * 113.66449 * 109.49914 * 3 2 1 6 6 C 1.53953 * 87.29304 * 89.73745 * 5 3 2 7 7 H 1.08996 * 113.66666 * 270.16962 * 6 5 3 8 8 N 1.46503 * 113.66098 * 139.20527 * 6 5 3 9 9 C 1.34779 * 119.99787 * 104.50761 * 8 6 5 10 10 O 1.21548 * 120.00116 * 359.97438 * 9 8 6 11 11 C 1.47882 * 119.99771 * 179.97438 * 9 8 6 12 12 C 1.39927 * 120.02701 * 359.97438 * 11 9 8 13 13 C 1.38332 * 120.35728 * 179.70257 * 12 11 9 14 14 C 1.37751 * 120.41225 * 0.02562 * 13 12 11 15 15 C 1.40749 * 120.04249 * 0.03942 * 14 13 12 16 16 C 1.41436 * 120.17889 * 179.97438 * 15 14 13 17 17 H 1.08002 * 120.00151 * 24.44939 * 16 15 14 18 18 C 1.39932 * 120.00115 * 204.45340 * 16 15 14 19 19 N 1.30827 * 120.00024 * 17.86231 * 18 16 15 20 20 Si 1.86805 * 120.00013 * 197.86613 * 18 16 15 21 21 H 1.48498 * 109.47063 * 89.99836 * 20 18 16 22 22 H 1.48501 * 109.47253 * 209.99697 * 20 18 16 23 23 H 1.48500 * 109.47213 * 329.99809 * 20 18 16 24 24 C 1.38998 * 120.02548 * 179.72312 * 11 9 8 25 25 C 1.52906 * 86.78327 * 24.73507 * 6 5 3 26 26 C 1.52910 * 121.14414 * 209.38105 * 25 6 5 27 27 C 1.53947 * 86.78397 * 209.37704 * 26 25 6 28 28 C 1.52908 * 121.13906 * 100.81299 * 25 6 5 29 29 H 1.08997 * 109.47424 * 300.00178 * 1 2 3 30 30 H 1.08995 * 109.46722 * 60.00620 * 1 2 3 31 31 H 1.09004 * 109.47174 * 180.02562 * 1 2 3 32 32 H 1.09002 * 113.58263 * 335.14069 * 5 3 2 33 33 H 1.08999 * 113.58498 * 204.34008 * 5 3 2 34 34 H 0.97000 * 120.00171 * 284.50199 * 8 6 5 35 35 H 1.07994 * 119.82078 * 359.72734 * 12 11 9 36 36 H 1.08001 * 119.79022 * 180.02562 * 13 12 11 37 37 H 1.08000 * 119.98031 * 180.02562 * 14 13 12 38 38 H 0.97003 * 119.99885 * 180.02562 * 19 18 16 39 39 H 1.07996 * 120.20122 * 0.27446 * 24 11 9 40 40 H 1.09004 * 113.65546 * 323.84466 * 26 25 6 41 41 H 1.08994 * 113.66140 * 94.89860 * 26 25 6 42 42 H 1.09002 * 113.58148 * 270.13490 * 27 26 25 43 43 H 1.08999 * 113.65256 * 139.34704 * 27 26 25 44 44 H 1.09002 * 113.66592 * 265.09923 * 28 25 6 45 45 H 1.09002 * 113.66461 * 36.06454 * 28 25 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 1 1.3324 2.0725 -0.3745 5 6 2.6916 1.6785 1.3291 6 6 3.9819 1.0650 0.7557 7 1 4.0935 0.0020 0.9695 8 7 5.1878 1.8378 1.0639 9 6 6.0435 1.4027 2.0099 10 8 5.8145 0.3695 2.6077 11 6 7.2610 2.1825 2.3205 12 6 7.5254 3.3718 1.6323 13 6 8.6591 4.1097 1.9216 14 6 9.5409 3.6825 2.8898 15 6 9.2925 2.4881 3.5917 16 6 10.1962 2.0465 4.5859 17 1 10.8341 2.7574 5.0900 18 6 10.2640 0.6885 4.9165 19 7 9.7743 -0.2087 4.0999 20 14 11.0535 0.1567 6.5238 21 1 10.0216 0.1099 7.5905 22 1 11.6552 -1.1908 6.3577 23 1 12.1115 1.1282 6.9008 24 6 8.1410 1.7373 3.3000 25 6 3.4030 1.3571 -0.6291 26 6 3.7588 0.4864 -1.8347 27 6 3.5449 1.7441 -2.6965 28 6 3.8609 2.5717 -1.4373 29 1 -0.3634 0.5138 0.8899 30 1 -0.3632 0.5137 -0.8900 31 1 -0.3634 -1.0277 0.0005 32 1 2.2961 1.1374 2.1888 33 1 2.7577 2.7532 1.4987 34 1 5.3703 2.6625 0.5870 35 1 6.8405 3.7155 0.8713 36 1 8.8540 5.0265 1.3851 37 1 10.4237 4.2644 3.1104 38 1 9.8209 -1.1501 4.3293 39 1 7.9412 0.8198 3.8335 40 1 4.7891 0.1306 -1.8283 41 1 3.0365 -0.3060 -2.0303 42 1 2.5204 1.8616 -3.0497 43 1 4.2820 1.8603 -3.4910 44 1 3.2201 3.4450 -1.3157 45 1 4.9194 2.8027 -1.3182 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000458182946.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:30:11 Heat of formation + Delta-G solvation = -19.208628 kcal Electronic energy + Delta-G solvation = -26126.748973 eV Core-core repulsion = 22496.307783 eV Total energy + Delta-G solvation = -3630.441190 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 315.162 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -41.05914 -38.79984 -37.24479 -36.90574 -34.73017 -33.74808 -32.40082 -29.98010 -29.40813 -26.99446 -25.92733 -25.38610 -24.86886 -24.34075 -22.17152 -21.07219 -20.79604 -19.50386 -18.48303 -17.71918 -16.99341 -16.20505 -15.90603 -15.62646 -15.34121 -14.94849 -14.85835 -14.52379 -14.17452 -13.86490 -13.64573 -13.15875 -12.90744 -12.77117 -12.53309 -12.47160 -12.30543 -12.01962 -11.98186 -11.71271 -11.59488 -11.18961 -11.13509 -11.05522 -10.72834 -10.55045 -10.48730 -10.38026 -10.11701 -9.97873 -9.67671 -9.54232 -9.20513 -8.94764 -8.53122 -7.61442 -7.50880 -6.78761 -4.40209 2.23368 2.82830 3.08878 3.12062 3.16955 3.32616 3.75908 3.87736 3.93289 4.28811 4.42490 4.59620 4.61388 4.64883 4.77820 4.92576 4.98901 5.12753 5.19493 5.29371 5.42185 5.50078 5.54895 5.62539 5.66417 5.72945 5.75329 5.78680 5.95881 6.00273 6.07282 6.21664 6.27039 6.31237 6.34401 6.73705 6.94099 7.00504 7.02971 7.07242 7.22906 7.39683 7.71754 7.78397 7.94521 8.13828 8.22119 8.52289 8.81647 8.85021 9.01205 10.15917 Molecular weight = 315.16amu Principal moments of inertia in cm(-1) A = 0.019384 B = 0.003155 C = 0.002882 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1444.164543 B = 8873.743209 C = 9713.020452 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.362 6.362 3 C 0.092 3.908 4 H 0.077 0.923 5 C -0.171 4.171 6 C 0.149 3.851 7 H 0.116 0.884 8 N -0.725 5.725 9 C 0.564 3.436 10 O -0.545 6.545 11 C -0.128 4.128 12 C -0.218 4.218 13 C -0.098 4.098 14 C -0.213 4.213 15 C 0.099 3.901 16 C -0.460 4.460 17 H 0.081 0.919 18 C 0.073 3.927 19 N -0.782 5.782 20 Si 0.911 3.089 21 H -0.266 1.266 22 H -0.277 1.277 23 H -0.262 1.262 24 C -0.092 4.092 25 C -0.113 4.113 26 C -0.120 4.120 27 C -0.138 4.138 28 C -0.114 4.114 29 H 0.042 0.958 30 H 0.040 0.960 31 H 0.086 0.914 32 H 0.078 0.922 33 H 0.091 0.909 34 H 0.397 0.603 35 H 0.088 0.912 36 H 0.092 0.908 37 H 0.095 0.905 38 H 0.285 0.715 39 H 0.134 0.866 40 H 0.085 0.915 41 H 0.074 0.926 42 H 0.076 0.924 43 H 0.068 0.932 44 H 0.070 0.930 45 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.949 3.380 -10.387 18.514 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.280 6.280 3 C 0.033 3.967 4 H 0.095 0.905 5 C -0.210 4.210 6 C 0.043 3.957 7 H 0.134 0.866 8 N -0.378 5.378 9 C 0.355 3.645 10 O -0.423 6.423 11 C -0.131 4.131 12 C -0.239 4.239 13 C -0.116 4.116 14 C -0.233 4.233 15 C 0.096 3.904 16 C -0.489 4.489 17 H 0.099 0.901 18 C -0.146 4.146 19 N -0.406 5.406 20 Si 0.735 3.265 21 H -0.191 1.191 22 H -0.202 1.202 23 H -0.186 1.186 24 C -0.112 4.112 25 C -0.114 4.114 26 C -0.158 4.158 27 C -0.176 4.176 28 C -0.152 4.152 29 H 0.060 0.940 30 H 0.059 0.941 31 H 0.105 0.895 32 H 0.096 0.904 33 H 0.109 0.891 34 H 0.234 0.766 35 H 0.106 0.894 36 H 0.110 0.890 37 H 0.113 0.887 38 H 0.096 0.904 39 H 0.151 0.849 40 H 0.103 0.897 41 H 0.093 0.907 42 H 0.095 0.905 43 H 0.087 0.913 44 H 0.089 0.911 45 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -15.007 2.185 -9.984 18.157 hybrid contribution 0.204 0.337 0.419 0.575 sum -14.803 2.522 -9.566 17.804 Atomic orbital electron populations 1.22804 0.81026 1.02795 0.99889 1.87905 1.19476 1.26162 1.94488 1.22577 0.92725 0.85159 0.96250 0.90540 1.23989 0.97467 1.01799 0.97786 1.22070 0.83072 0.97560 0.92955 0.86649 1.45925 1.23509 1.27335 1.41021 1.18880 0.82833 0.84587 0.78248 1.90693 1.75915 1.24667 1.50990 1.19500 0.95371 0.96575 1.01671 1.20315 1.00651 0.97827 1.05065 1.20426 0.94997 0.98058 0.98107 1.21090 1.00419 1.01051 1.00729 1.17605 0.91131 0.90720 0.90923 1.19596 1.18824 0.92798 1.17682 0.90075 1.25968 0.94350 0.96657 0.97643 1.69793 1.34351 1.02897 1.33592 0.86270 0.79880 0.78424 0.81934 1.19144 1.20221 1.18597 1.21645 0.92125 1.00725 0.96727 1.23156 0.95119 0.99065 0.94054 1.22619 1.02212 0.96673 0.94257 1.22821 1.01493 0.96735 0.96503 1.22597 1.01902 0.95538 0.95136 0.93958 0.94119 0.89541 0.90378 0.89054 0.76604 0.89400 0.88951 0.88652 0.90424 0.84855 0.89673 0.90707 0.90487 0.91283 0.91105 0.89037 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.26 10.86 101.05 1.10 1.35 16 2 O -0.36 -4.27 10.20 -35.23 -0.36 -4.63 16 3 C 0.09 1.00 4.15 -26.29 -0.11 0.89 16 4 H 0.08 0.68 7.90 -51.93 -0.41 0.27 16 5 C -0.17 -2.19 7.72 -25.75 -0.20 -2.39 16 6 C 0.15 2.25 4.03 -67.48 -0.27 1.98 16 7 H 0.12 2.08 7.54 -51.93 -0.39 1.68 16 8 N -0.73 -12.30 5.24 -54.30 -0.28 -12.58 16 9 C 0.56 12.59 7.77 -12.31 -0.10 12.49 16 10 O -0.54 -14.03 15.97 5.32 0.09 -13.94 16 11 C -0.13 -3.05 5.87 -105.04 -0.62 -3.67 16 12 C -0.22 -4.60 9.55 -38.91 -0.37 -4.97 16 13 C -0.10 -2.08 10.01 -39.72 -0.40 -2.48 16 14 C -0.21 -5.08 9.78 -38.81 -0.38 -5.46 16 15 C 0.10 2.63 5.57 -106.87 -0.60 2.04 16 16 C -0.46 -12.17 9.05 -37.73 -0.34 -12.51 16 17 H 0.08 2.04 7.91 -52.49 -0.41 1.62 16 18 C 0.07 1.86 5.14 -17.35 -0.09 1.77 16 19 N -0.78 -20.93 10.96 55.55 0.61 -20.32 16 20 Si 0.91 18.96 29.60 -169.99 -5.03 13.93 16 21 H -0.27 -5.53 7.11 56.52 0.40 -5.13 16 22 H -0.28 -5.65 7.11 56.52 0.40 -5.24 16 23 H -0.26 -5.31 7.11 56.52 0.40 -4.91 16 24 C -0.09 -2.48 8.24 -38.44 -0.32 -2.80 16 25 C -0.11 -1.31 0.98 -154.71 -0.15 -1.46 16 26 C -0.12 -1.35 7.71 -26.28 -0.20 -1.55 16 27 C -0.14 -1.25 8.08 -25.75 -0.21 -1.46 16 28 C -0.11 -1.11 7.16 -26.28 -0.19 -1.30 16 29 H 0.04 0.32 8.14 -51.93 -0.42 -0.11 16 30 H 0.04 0.27 8.14 -51.93 -0.42 -0.15 16 31 H 0.09 0.60 8.14 -51.93 -0.42 0.18 16 32 H 0.08 1.07 8.14 -51.93 -0.42 0.65 16 33 H 0.09 1.08 8.14 -51.93 -0.42 0.65 16 34 H 0.40 5.85 4.94 -40.82 -0.20 5.64 16 35 H 0.09 1.52 6.38 -52.49 -0.33 1.19 16 36 H 0.09 1.66 8.06 -52.49 -0.42 1.24 16 37 H 0.10 2.12 8.06 -52.49 -0.42 1.69 16 38 H 0.28 7.01 8.30 -40.82 -0.34 6.67 16 39 H 0.13 3.90 5.74 -52.49 -0.30 3.60 16 40 H 0.08 1.04 8.14 -51.93 -0.42 0.62 16 41 H 0.07 0.84 7.83 -51.93 -0.41 0.44 16 42 H 0.08 0.62 8.14 -51.93 -0.42 0.20 16 43 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 44 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 45 H 0.09 0.93 6.96 -51.93 -0.36 0.57 16 LS Contribution 367.85 15.07 5.54 5.54 Total: -1.00 -30.35 367.85 -9.48 -39.83 By element: Atomic # 1 Polarization: 18.32 SS G_CDS: -6.61 Total: 11.72 kcal Atomic # 6 Polarization: -16.10 SS G_CDS: -3.44 Total: -19.53 kcal Atomic # 7 Polarization: -33.23 SS G_CDS: 0.32 Total: -32.91 kcal Atomic # 8 Polarization: -18.30 SS G_CDS: -0.27 Total: -18.57 kcal Atomic # 14 Polarization: 18.96 SS G_CDS: -5.03 Total: 13.93 kcal Total LS contribution 5.54 Total: 5.54 kcal Total: -30.35 -9.48 -39.83 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000458182946.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.621 kcal (2) G-P(sol) polarization free energy of solvation -30.348 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.727 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.482 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.830 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.209 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds