Wall clock time and date at job start Tue Mar 31 2020 11:30:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.42903 * 114.00097 * 2 1 4 4 H 1.09000 * 112.94825 * 338.09332 * 3 2 1 5 5 C 1.53945 * 113.66449 * 109.49914 * 3 2 1 6 6 C 1.53953 * 87.29304 * 89.73745 * 5 3 2 7 7 H 1.08996 * 113.66666 * 270.16962 * 6 5 3 8 8 N 1.46503 * 113.66098 * 139.20527 * 6 5 3 9 9 C 1.34779 * 119.99787 * 104.50761 * 8 6 5 10 10 O 1.21548 * 120.00116 * 359.97438 * 9 8 6 11 11 C 1.47882 * 119.99771 * 179.97438 * 9 8 6 12 12 C 1.39927 * 120.02701 * 359.97438 * 11 9 8 13 13 C 1.38332 * 120.35728 * 179.70257 * 12 11 9 14 14 C 1.37751 * 120.41225 * 0.02562 * 13 12 11 15 15 C 1.40749 * 120.04249 * 0.03942 * 14 13 12 16 16 C 1.41436 * 120.17889 * 179.97438 * 15 14 13 17 17 H 1.08002 * 120.00151 * 24.44939 * 16 15 14 18 18 C 1.39932 * 120.00115 * 204.45340 * 16 15 14 19 19 N 1.30827 * 120.00024 * 17.86231 * 18 16 15 20 20 Si 1.86805 * 120.00013 * 197.86613 * 18 16 15 21 21 H 1.48498 * 109.47063 * 89.99836 * 20 18 16 22 22 H 1.48501 * 109.47253 * 209.99697 * 20 18 16 23 23 H 1.48500 * 109.47213 * 329.99809 * 20 18 16 24 24 C 1.38998 * 120.02548 * 179.72312 * 11 9 8 25 25 C 1.52906 * 86.78327 * 24.73507 * 6 5 3 26 26 C 1.52910 * 121.14414 * 209.38105 * 25 6 5 27 27 C 1.53947 * 86.78397 * 209.37704 * 26 25 6 28 28 C 1.52908 * 121.13906 * 100.81299 * 25 6 5 29 29 H 1.08997 * 109.47424 * 300.00178 * 1 2 3 30 30 H 1.08995 * 109.46722 * 60.00620 * 1 2 3 31 31 H 1.09004 * 109.47174 * 180.02562 * 1 2 3 32 32 H 1.09002 * 113.58263 * 335.14069 * 5 3 2 33 33 H 1.08999 * 113.58498 * 204.34008 * 5 3 2 34 34 H 0.97000 * 120.00171 * 284.50199 * 8 6 5 35 35 H 1.07994 * 119.82078 * 359.72734 * 12 11 9 36 36 H 1.08001 * 119.79022 * 180.02562 * 13 12 11 37 37 H 1.08000 * 119.98031 * 180.02562 * 14 13 12 38 38 H 0.97003 * 119.99885 * 180.02562 * 19 18 16 39 39 H 1.07996 * 120.20122 * 0.27446 * 24 11 9 40 40 H 1.09004 * 113.65546 * 323.84466 * 26 25 6 41 41 H 1.08994 * 113.66140 * 94.89860 * 26 25 6 42 42 H 1.09002 * 113.58148 * 270.13490 * 27 26 25 43 43 H 1.08999 * 113.65256 * 139.34704 * 27 26 25 44 44 H 1.09002 * 113.66592 * 265.09923 * 28 25 6 45 45 H 1.09002 * 113.66461 * 36.06454 * 28 25 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 1 1.3324 2.0725 -0.3745 5 6 2.6916 1.6785 1.3291 6 6 3.9819 1.0650 0.7557 7 1 4.0935 0.0020 0.9695 8 7 5.1878 1.8378 1.0639 9 6 6.0435 1.4027 2.0099 10 8 5.8145 0.3695 2.6077 11 6 7.2610 2.1825 2.3205 12 6 7.5254 3.3718 1.6323 13 6 8.6591 4.1097 1.9216 14 6 9.5409 3.6825 2.8898 15 6 9.2925 2.4881 3.5917 16 6 10.1962 2.0465 4.5859 17 1 10.8341 2.7574 5.0900 18 6 10.2640 0.6885 4.9165 19 7 9.7743 -0.2087 4.0999 20 14 11.0535 0.1567 6.5238 21 1 10.0216 0.1099 7.5905 22 1 11.6552 -1.1908 6.3577 23 1 12.1115 1.1282 6.9008 24 6 8.1410 1.7373 3.3000 25 6 3.4030 1.3571 -0.6291 26 6 3.7588 0.4864 -1.8347 27 6 3.5449 1.7441 -2.6965 28 6 3.8609 2.5717 -1.4373 29 1 -0.3634 0.5138 0.8899 30 1 -0.3632 0.5137 -0.8900 31 1 -0.3634 -1.0277 0.0005 32 1 2.2961 1.1374 2.1888 33 1 2.7577 2.7532 1.4987 34 1 5.3703 2.6625 0.5870 35 1 6.8405 3.7155 0.8713 36 1 8.8540 5.0265 1.3851 37 1 10.4237 4.2644 3.1104 38 1 9.8209 -1.1501 4.3293 39 1 7.9412 0.8198 3.8335 40 1 4.7891 0.1306 -1.8283 41 1 3.0365 -0.3060 -2.0303 42 1 2.5204 1.8616 -3.0497 43 1 4.2820 1.8603 -3.4910 44 1 3.2201 3.4450 -1.3157 45 1 4.9194 2.8027 -1.3182 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000458182946.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:30:10 Heat of formation + Delta-G solvation = -37.328305 kcal Electronic energy + Delta-G solvation = -26127.534701 eV Core-core repulsion = 22496.307783 eV Total energy + Delta-G solvation = -3631.226918 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 315.162 amu Computer time = 1.09 seconds Orbital eigenvalues (eV) -42.10070 -40.47615 -38.75154 -38.03751 -35.96998 -35.59154 -33.81713 -31.77948 -31.26286 -27.74701 -27.26630 -26.73938 -25.98819 -25.39513 -23.71498 -22.80201 -21.90001 -21.21461 -19.71929 -19.22044 -18.23104 -17.64419 -17.03904 -16.86426 -16.65119 -16.50955 -16.04952 -15.80590 -15.66281 -15.28916 -15.08016 -14.60644 -14.47889 -14.28260 -13.98395 -13.49385 -13.31778 -13.21418 -13.09506 -12.92908 -12.84655 -12.81597 -12.55198 -12.45055 -12.18829 -11.94554 -11.89005 -11.51463 -11.40467 -11.32051 -11.09246 -11.03457 -10.74322 -10.39569 -9.99583 -9.47063 -9.38787 -8.67426 -6.39029 0.37393 1.00311 1.35157 1.47340 1.49903 2.08777 2.18208 2.25036 2.58418 2.77805 3.33844 3.49972 3.68559 3.74731 3.76069 3.87340 3.94844 4.02233 4.24750 4.40793 4.45720 4.50842 4.55889 4.58638 4.59071 4.75359 4.83686 4.85370 4.87525 4.90121 4.96437 4.99915 5.08096 5.11019 5.17748 5.19653 5.30627 5.35582 5.50051 5.52334 5.58843 5.86443 5.92280 6.04995 6.28176 6.28692 6.51801 6.70089 6.87092 6.94424 7.32693 8.29255 Molecular weight = 315.16amu Principal moments of inertia in cm(-1) A = 0.019384 B = 0.003155 C = 0.002882 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1444.164543 B = 8873.743209 C = 9713.020452 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.391 6.391 3 C 0.104 3.896 4 H 0.112 0.888 5 C -0.168 4.168 6 C 0.127 3.873 7 H 0.074 0.926 8 N -0.698 5.698 9 C 0.558 3.442 10 O -0.593 6.593 11 C -0.139 4.139 12 C -0.196 4.196 13 C -0.094 4.094 14 C -0.217 4.217 15 C 0.067 3.933 16 C -0.497 4.497 17 H 0.085 0.915 18 C 0.028 3.972 19 N -0.826 5.826 20 Si 0.984 3.016 21 H -0.267 1.267 22 H -0.270 1.270 23 H -0.249 1.249 24 C -0.132 4.132 25 C -0.107 4.107 26 C -0.131 4.131 27 C -0.123 4.123 28 C -0.110 4.110 29 H 0.048 0.952 30 H 0.061 0.939 31 H 0.092 0.908 32 H 0.059 0.941 33 H 0.109 0.891 34 H 0.412 0.588 35 H 0.137 0.863 36 H 0.141 0.859 37 H 0.109 0.891 38 H 0.286 0.714 39 H 0.096 0.904 40 H 0.066 0.934 41 H 0.070 0.930 42 H 0.095 0.905 43 H 0.077 0.923 44 H 0.097 0.903 45 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.471 6.412 -12.617 21.716 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.310 6.310 3 C 0.046 3.954 4 H 0.130 0.870 5 C -0.207 4.207 6 C 0.022 3.978 7 H 0.092 0.908 8 N -0.350 5.350 9 C 0.349 3.651 10 O -0.475 6.475 11 C -0.143 4.143 12 C -0.216 4.216 13 C -0.112 4.112 14 C -0.237 4.237 15 C 0.065 3.935 16 C -0.526 4.526 17 H 0.103 0.897 18 C -0.187 4.187 19 N -0.451 5.451 20 Si 0.804 3.196 21 H -0.192 1.192 22 H -0.194 1.194 23 H -0.172 1.172 24 C -0.153 4.153 25 C -0.108 4.108 26 C -0.168 4.168 27 C -0.160 4.160 28 C -0.147 4.147 29 H 0.066 0.934 30 H 0.080 0.920 31 H 0.111 0.889 32 H 0.078 0.922 33 H 0.128 0.872 34 H 0.251 0.749 35 H 0.154 0.846 36 H 0.159 0.841 37 H 0.128 0.872 38 H 0.096 0.904 39 H 0.114 0.886 40 H 0.084 0.916 41 H 0.089 0.911 42 H 0.114 0.886 43 H 0.095 0.905 44 H 0.116 0.884 45 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -16.557 5.264 -12.266 21.268 hybrid contribution 0.549 -0.540 0.963 1.233 sum -16.008 4.724 -11.303 20.158 Atomic orbital electron populations 1.23012 0.79136 1.03791 1.01164 1.87886 1.21669 1.26962 1.94490 1.22532 0.92896 0.85735 0.94272 0.87031 1.24006 0.95904 1.02365 0.98445 1.22273 0.83035 0.95530 0.96918 0.90766 1.45695 1.22931 1.27448 1.38927 1.18850 0.83284 0.83972 0.79031 1.90667 1.76974 1.26730 1.53118 1.19802 0.95450 0.97814 1.01203 1.20832 1.00894 0.95679 1.04161 1.20934 0.93868 0.99384 0.97007 1.21419 1.01480 0.99977 1.00790 1.17951 0.91317 0.92195 0.92062 1.19876 1.19962 0.93652 1.19158 0.89691 1.26880 0.94624 0.96366 1.00804 1.69903 1.36429 1.03141 1.35672 0.85182 0.79005 0.78358 0.77059 1.19192 1.19447 1.17193 1.21439 0.94089 1.00690 0.99053 1.23236 0.94957 1.00754 0.91825 1.22654 1.01024 0.97827 0.95329 1.22782 1.02870 0.94232 0.96152 1.22655 1.02169 0.95551 0.94339 0.93376 0.92013 0.88907 0.92171 0.87225 0.74864 0.84584 0.84105 0.87244 0.90386 0.88610 0.91560 0.91138 0.88609 0.90466 0.88449 0.89408 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.35 10.86 113.37 1.23 1.58 16 2 O -0.39 -8.75 10.20 -148.98 -1.52 -10.27 16 3 C 0.10 2.02 4.15 30.88 0.13 2.15 16 4 H 0.11 1.44 7.90 -2.39 -0.02 1.42 16 5 C -0.17 -4.12 7.72 31.23 0.24 -3.88 16 6 C 0.13 3.86 4.03 45.28 0.18 4.05 16 7 H 0.07 2.88 7.54 -2.39 -0.02 2.87 16 8 N -0.70 -23.26 5.24 -443.99 -2.33 -25.59 16 9 C 0.56 25.77 7.77 86.80 0.67 26.44 16 10 O -0.59 -32.81 15.97 -3.87 -0.06 -32.87 16 11 C -0.14 -6.77 5.87 -20.13 -0.12 -6.89 16 12 C -0.20 -7.71 9.55 22.70 0.22 -7.50 16 13 C -0.09 -3.70 10.01 22.18 0.22 -3.48 16 14 C -0.22 -10.18 9.78 22.77 0.22 -9.96 16 15 C 0.07 3.70 5.57 -21.32 -0.12 3.58 16 16 C -0.50 -27.51 9.05 23.47 0.21 -27.30 16 17 H 0.09 4.42 7.91 -2.91 -0.02 4.40 16 18 C 0.03 1.50 5.14 85.25 0.44 1.94 16 19 N -0.83 -47.33 10.96 21.82 0.24 -47.09 16 20 Si 0.98 40.53 29.60 68.60 2.03 42.56 16 21 H -0.27 -10.89 7.11 99.48 0.71 -10.18 16 22 H -0.27 -10.65 7.11 99.48 0.71 -9.95 16 23 H -0.25 -9.59 7.11 99.48 0.71 -8.88 16 24 C -0.13 -7.53 8.24 23.01 0.19 -7.34 16 25 C -0.11 -2.25 0.98 -52.32 -0.05 -2.30 16 26 C -0.13 -2.76 7.71 30.88 0.24 -2.52 16 27 C -0.12 -1.77 8.08 31.23 0.25 -1.52 16 28 C -0.11 -1.68 7.16 30.88 0.22 -1.46 16 29 H 0.05 0.62 8.14 -2.39 -0.02 0.60 16 30 H 0.06 0.62 8.14 -2.39 -0.02 0.60 16 31 H 0.09 1.16 8.14 -2.38 -0.02 1.14 16 32 H 0.06 1.68 8.14 -2.39 -0.02 1.66 16 33 H 0.11 2.27 8.14 -2.39 -0.02 2.25 16 34 H 0.41 10.95 4.94 -92.71 -0.46 10.49 16 35 H 0.14 3.99 6.38 -2.91 -0.02 3.97 16 36 H 0.14 4.24 8.06 -2.91 -0.02 4.22 16 37 H 0.11 4.72 8.06 -2.91 -0.02 4.70 16 38 H 0.29 15.14 8.30 -92.71 -0.77 14.37 16 39 H 0.10 6.13 5.74 -2.91 -0.02 6.11 16 40 H 0.07 1.63 8.14 -2.39 -0.02 1.61 16 41 H 0.07 1.53 7.83 -2.39 -0.02 1.51 16 42 H 0.10 1.07 8.14 -2.39 -0.02 1.05 16 43 H 0.08 1.02 8.14 -2.39 -0.02 1.01 16 44 H 0.10 1.04 8.14 -2.39 -0.02 1.02 16 45 H 0.09 1.43 6.96 -2.39 -0.02 1.41 16 Total: -1.00 -73.57 367.85 3.28 -70.29 By element: Atomic # 1 Polarization: 36.84 SS G_CDS: 0.54 Total: 37.38 kcal Atomic # 6 Polarization: -38.79 SS G_CDS: 4.38 Total: -34.41 kcal Atomic # 7 Polarization: -70.59 SS G_CDS: -2.09 Total: -72.68 kcal Atomic # 8 Polarization: -41.56 SS G_CDS: -1.58 Total: -43.15 kcal Atomic # 14 Polarization: 40.53 SS G_CDS: 2.03 Total: 42.56 kcal Total: -73.57 3.28 -70.29 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000458182946.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.958 kcal (2) G-P(sol) polarization free energy of solvation -73.571 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.612 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.284 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.286 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.328 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.09 seconds