Wall clock time and date at job start Tue Mar 31 2020 11:30:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.42897 * 114.00395 * 2 1 4 4 H 1.09006 * 112.88410 * 21.83482 * 3 2 1 5 5 C 1.53956 * 113.66265 * 250.49703 * 3 2 1 6 6 C 1.53945 * 87.29527 * 220.78881 * 5 3 2 7 7 H 1.08997 * 113.66471 * 270.17195 * 6 5 3 8 8 N 1.46494 * 113.66340 * 139.20505 * 6 5 3 9 9 C 1.34777 * 120.00251 * 104.50698 * 8 6 5 10 10 O 1.21549 * 119.99662 * 359.97438 * 9 8 6 11 11 C 1.47886 * 120.00142 * 180.02562 * 9 8 6 12 12 C 1.39923 * 120.02534 * 359.97438 * 11 9 8 13 13 C 1.38327 * 120.35446 * 179.74326 * 12 11 9 14 14 C 1.37745 * 120.41710 * 0.28053 * 13 12 11 15 15 C 1.40750 * 120.04046 * 359.97438 * 14 13 12 16 16 C 1.41437 * 120.18095 * 180.02562 * 15 14 13 17 17 H 1.07997 * 119.99766 * 24.45670 * 16 15 14 18 18 C 1.39937 * 119.99936 * 204.45288 * 16 15 14 19 19 N 1.30822 * 119.99963 * 17.87369 * 18 16 15 20 20 Si 1.86797 * 119.99825 * 197.87493 * 18 16 15 21 21 H 1.48507 * 109.47384 * 94.69357 * 20 18 16 22 22 H 1.48501 * 109.47411 * 214.69330 * 20 18 16 23 23 H 1.48506 * 109.47326 * 334.69263 * 20 18 16 24 24 C 1.38992 * 120.02580 * 180.27525 * 11 9 8 25 25 C 1.52905 * 113.66811 * 153.30573 * 3 2 1 26 26 C 1.52905 * 121.13920 * 265.09617 * 25 3 2 27 27 C 1.53951 * 86.78299 * 100.81103 * 26 25 3 28 28 C 1.52909 * 121.13211 * 13.65580 * 25 3 2 29 29 H 1.08994 * 109.46930 * 180.02562 * 1 2 3 30 30 H 1.08997 * 109.47062 * 300.00365 * 1 2 3 31 31 H 1.08995 * 109.47054 * 59.99959 * 1 2 3 32 32 H 1.09003 * 113.57818 * 106.18011 * 5 3 2 33 33 H 1.08997 * 113.64607 * 335.40417 * 5 3 2 34 34 H 0.97006 * 119.99705 * 284.50396 * 8 6 5 35 35 H 1.08000 * 119.82079 * 0.02694 * 12 11 9 36 36 H 1.08007 * 119.78729 * 180.25371 * 13 12 11 37 37 H 1.07998 * 119.98638 * 179.97438 * 14 13 12 38 38 H 0.97002 * 119.99730 * 179.97438 * 19 18 16 39 39 H 1.08004 * 120.20152 * 359.97438 * 24 11 9 40 40 H 1.08997 * 113.66589 * 215.28529 * 26 25 3 41 41 H 1.09002 * 113.66105 * 346.34011 * 26 25 3 42 42 H 1.09001 * 113.58183 * 270.13741 * 27 26 25 43 43 H 1.09002 * 113.57986 * 139.34102 * 27 26 25 44 44 H 1.09003 * 113.65946 * 13.65348 * 28 25 3 45 45 H 1.08997 * 113.66486 * 144.71288 * 28 25 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 1 1.3311 2.0718 0.3735 5 6 2.6917 1.6783 -1.3292 6 6 3.8159 2.3131 -0.4906 7 1 3.6463 3.3638 -0.2554 8 7 5.1587 2.0568 -1.0173 9 6 5.8268 3.0328 -1.6635 10 8 5.3149 4.1255 -1.8098 11 6 7.1820 2.7738 -2.1957 12 6 7.7715 1.5159 -2.0280 13 6 9.0367 1.2647 -2.5276 14 6 9.7332 2.2509 -3.1906 15 6 9.1588 3.5240 -3.3643 16 6 9.8711 4.5387 -4.0450 17 1 10.6390 4.2746 -4.7570 18 6 9.5808 5.8848 -3.7961 19 7 8.9260 6.2237 -2.7155 20 14 10.1282 7.1976 -5.0069 21 1 9.0204 7.4937 -5.9506 22 1 10.4915 8.4329 -4.2671 23 1 11.3079 6.7102 -5.7659 24 6 7.8738 3.7817 -2.8572 25 6 3.4030 1.3571 0.6291 26 6 3.5931 1.7321 2.0992 27 6 3.7469 0.2251 2.3739 28 6 4.1927 0.0777 0.9077 29 1 -0.3633 -1.0276 0.0005 30 1 -0.3633 0.5139 0.8899 31 1 -0.3633 0.5138 -0.8899 32 1 2.1282 2.4000 -1.9207 33 1 3.0159 0.8158 -1.9114 34 1 5.5670 1.1846 -0.9008 35 1 7.2339 0.7357 -1.5098 36 1 9.4813 0.2891 -2.3966 37 1 10.7208 2.0472 -3.5775 38 1 8.7251 7.1569 -2.5428 39 1 7.4245 4.7555 -2.9850 40 1 4.4995 2.3065 2.2906 41 1 2.7068 2.1719 2.5566 42 1 2.8047 -0.2761 2.5956 43 1 4.5312 -0.0091 3.0937 44 1 3.7854 -0.8041 0.4131 45 1 5.2676 0.1871 0.7642 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000458182950.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:30:19 Heat of formation + Delta-G solvation = -21.406975 kcal Electronic energy + Delta-G solvation = -26108.956947 eV Core-core repulsion = 22478.420430 eV Total energy + Delta-G solvation = -3630.536518 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 315.162 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -41.04286 -38.82912 -37.17119 -36.89790 -34.83483 -33.76378 -32.47508 -29.99384 -29.41720 -27.11961 -25.87291 -25.39462 -24.83370 -24.17390 -22.12241 -21.10322 -20.81361 -19.52281 -18.47979 -17.69564 -17.08173 -16.26362 -15.90943 -15.61168 -15.38226 -14.93188 -14.80430 -14.44699 -14.23823 -14.01864 -13.65102 -13.17273 -12.96459 -12.67678 -12.52568 -12.47758 -12.30197 -12.05489 -11.83410 -11.65087 -11.47718 -11.24393 -11.16105 -11.06846 -10.73536 -10.61214 -10.48845 -10.35564 -10.26096 -9.99802 -9.68391 -9.50033 -9.21722 -8.98840 -8.56770 -7.62532 -7.51510 -6.79883 -4.41024 2.21425 2.81790 3.08027 3.11564 3.15926 3.37552 3.84620 3.90218 3.92351 4.26138 4.39725 4.49066 4.63444 4.66926 4.75168 4.87791 5.01323 5.14756 5.19362 5.34476 5.41013 5.48458 5.57667 5.61785 5.69387 5.72466 5.78368 5.83399 5.92792 5.99090 6.07723 6.22099 6.25803 6.29494 6.37226 6.72886 6.91371 6.99790 7.03527 7.04386 7.21959 7.38872 7.70979 7.77304 7.93590 8.11717 8.20367 8.51298 8.80738 8.84048 8.97130 10.14812 Molecular weight = 315.16amu Principal moments of inertia in cm(-1) A = 0.021651 B = 0.003017 C = 0.002865 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1292.933403 B = 9279.862337 C = 9771.192687 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.370 6.370 3 C 0.089 3.911 4 H 0.091 0.909 5 C -0.167 4.167 6 C 0.142 3.858 7 H 0.114 0.886 8 N -0.721 5.721 9 C 0.565 3.435 10 O -0.547 6.547 11 C -0.129 4.129 12 C -0.217 4.217 13 C -0.097 4.097 14 C -0.212 4.212 15 C 0.098 3.902 16 C -0.460 4.460 17 H 0.081 0.919 18 C 0.073 3.927 19 N -0.783 5.783 20 Si 0.910 3.090 21 H -0.267 1.267 22 H -0.277 1.277 23 H -0.261 1.261 24 C -0.092 4.092 25 C -0.109 4.109 26 C -0.127 4.127 27 C -0.133 4.133 28 C -0.111 4.111 29 H 0.083 0.917 30 H 0.040 0.960 31 H 0.041 0.959 32 H 0.073 0.927 33 H 0.093 0.907 34 H 0.400 0.600 35 H 0.089 0.911 36 H 0.093 0.907 37 H 0.096 0.904 38 H 0.284 0.716 39 H 0.134 0.866 40 H 0.087 0.913 41 H 0.066 0.934 42 H 0.080 0.920 43 H 0.066 0.934 44 H 0.078 0.922 45 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.117 -9.483 7.573 17.870 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.288 6.288 3 C 0.031 3.969 4 H 0.108 0.892 5 C -0.206 4.206 6 C 0.036 3.964 7 H 0.132 0.868 8 N -0.374 5.374 9 C 0.356 3.644 10 O -0.425 6.425 11 C -0.132 4.132 12 C -0.238 4.238 13 C -0.116 4.116 14 C -0.232 4.232 15 C 0.096 3.904 16 C -0.489 4.489 17 H 0.099 0.901 18 C -0.146 4.146 19 N -0.407 5.407 20 Si 0.735 3.265 21 H -0.192 1.192 22 H -0.202 1.202 23 H -0.185 1.185 24 C -0.112 4.112 25 C -0.110 4.110 26 C -0.164 4.164 27 C -0.171 4.171 28 C -0.148 4.148 29 H 0.102 0.898 30 H 0.058 0.942 31 H 0.060 0.940 32 H 0.092 0.908 33 H 0.111 0.889 34 H 0.237 0.763 35 H 0.107 0.893 36 H 0.111 0.889 37 H 0.114 0.886 38 H 0.095 0.905 39 H 0.152 0.848 40 H 0.106 0.894 41 H 0.085 0.915 42 H 0.098 0.902 43 H 0.084 0.916 44 H 0.097 0.903 45 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -13.447 -8.638 7.605 17.699 hybrid contribution 0.164 0.422 -0.385 0.594 sum -13.282 -8.216 7.220 17.206 Atomic orbital electron populations 1.22770 0.81459 1.02566 0.99886 1.87929 1.19245 1.27077 1.94556 1.23187 0.92304 0.85157 0.96273 0.89151 1.23977 0.97934 1.01532 0.97182 1.21807 0.82281 0.99374 0.92947 0.86834 1.45821 1.16605 1.15941 1.58999 1.18883 0.85811 0.83250 0.76446 1.90684 1.69654 1.24041 1.58107 1.19480 0.92971 0.95945 1.04781 1.20331 0.97731 0.95536 1.10157 1.20431 0.94661 0.97437 0.99050 1.21096 0.99412 0.95419 1.07264 1.17609 0.90857 0.91910 0.90054 1.19604 1.17991 0.90019 1.21262 0.90055 1.25965 0.93548 1.00262 0.94832 1.69794 1.29471 1.20088 1.21371 0.86261 0.79935 0.79456 0.80880 1.19210 1.20204 1.18531 1.21641 0.93622 0.98106 0.97817 1.23208 0.95322 0.97822 0.94651 1.22782 1.02239 0.96922 0.94448 1.22763 1.01443 0.96267 0.96604 1.22434 0.99351 0.96479 0.96571 0.89822 0.94185 0.94039 0.90811 0.88851 0.76340 0.89337 0.88907 0.88627 0.90470 0.84836 0.89422 0.91515 0.90178 0.91565 0.90311 0.89749 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.23 10.86 101.05 1.10 1.33 16 2 O -0.37 -4.00 9.90 -35.23 -0.35 -4.35 16 3 C 0.09 0.96 4.17 -26.28 -0.11 0.85 16 4 H 0.09 0.85 7.90 -51.93 -0.41 0.44 16 5 C -0.17 -2.12 7.72 -25.75 -0.20 -2.32 16 6 C 0.14 2.04 4.08 -67.48 -0.28 1.76 16 7 H 0.11 1.79 7.54 -51.93 -0.39 1.40 16 8 N -0.72 -12.11 5.24 -54.30 -0.28 -12.40 16 9 C 0.57 12.42 7.77 -12.31 -0.10 12.32 16 10 O -0.55 -13.70 15.97 5.32 0.09 -13.62 16 11 C -0.13 -3.05 5.87 -105.04 -0.62 -3.67 16 12 C -0.22 -4.59 9.55 -38.92 -0.37 -4.97 16 13 C -0.10 -2.09 10.01 -39.73 -0.40 -2.49 16 14 C -0.21 -5.05 9.78 -38.81 -0.38 -5.43 16 15 C 0.10 2.61 5.57 -106.87 -0.60 2.01 16 16 C -0.46 -12.12 9.05 -37.73 -0.34 -12.46 16 17 H 0.08 2.04 7.91 -52.49 -0.42 1.62 16 18 C 0.07 1.85 5.14 -17.35 -0.09 1.76 16 19 N -0.78 -20.79 10.95 55.55 0.61 -20.18 16 20 Si 0.91 18.85 29.59 -169.99 -5.03 13.82 16 21 H -0.27 -5.51 7.11 56.52 0.40 -5.11 16 22 H -0.28 -5.61 7.11 56.52 0.40 -5.21 16 23 H -0.26 -5.28 7.11 56.52 0.40 -4.88 16 24 C -0.09 -2.46 8.24 -38.44 -0.32 -2.77 16 25 C -0.11 -1.25 1.07 -154.71 -0.17 -1.42 16 26 C -0.13 -1.33 7.84 -26.28 -0.21 -1.54 16 27 C -0.13 -1.30 8.08 -25.75 -0.21 -1.51 16 28 C -0.11 -1.21 6.87 -26.28 -0.18 -1.39 16 29 H 0.08 0.54 8.14 -51.93 -0.42 0.11 16 30 H 0.04 0.27 8.14 -51.93 -0.42 -0.16 16 31 H 0.04 0.30 8.14 -51.93 -0.42 -0.12 16 32 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 33 H 0.09 1.24 8.14 -51.93 -0.42 0.82 16 34 H 0.40 6.01 4.94 -40.82 -0.20 5.81 16 35 H 0.09 1.56 6.38 -52.49 -0.33 1.22 16 36 H 0.09 1.68 8.06 -52.48 -0.42 1.26 16 37 H 0.10 2.12 8.06 -52.49 -0.42 1.70 16 38 H 0.28 6.93 8.30 -40.82 -0.34 6.59 16 39 H 0.13 3.87 5.74 -52.48 -0.30 3.57 16 40 H 0.09 0.99 8.14 -51.93 -0.42 0.57 16 41 H 0.07 0.63 8.14 -51.93 -0.42 0.20 16 42 H 0.08 0.75 8.14 -51.93 -0.42 0.33 16 43 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 44 H 0.08 0.88 7.65 -51.93 -0.40 0.48 16 45 H 0.08 0.94 6.96 -51.93 -0.36 0.58 16 LS Contribution 367.36 15.07 5.54 5.54 Total: -1.00 -29.71 367.36 -9.48 -39.19 By element: Atomic # 1 Polarization: 18.52 SS G_CDS: -6.60 Total: 11.92 kcal Atomic # 6 Polarization: -16.47 SS G_CDS: -3.45 Total: -19.92 kcal Atomic # 7 Polarization: -32.90 SS G_CDS: 0.32 Total: -32.57 kcal Atomic # 8 Polarization: -17.70 SS G_CDS: -0.26 Total: -17.97 kcal Atomic # 14 Polarization: 18.85 SS G_CDS: -5.03 Total: 13.82 kcal Total LS contribution 5.54 Total: 5.54 kcal Total: -29.71 -9.48 -39.19 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000458182950.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.785 kcal (2) G-P(sol) polarization free energy of solvation -29.709 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.925 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.482 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.192 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.407 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds