Wall clock time and date at job start Tue Mar 31 2020 11:30:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.42897 * 114.00395 * 2 1 4 4 H 1.09006 * 112.88410 * 21.83482 * 3 2 1 5 5 C 1.53956 * 113.66265 * 250.49703 * 3 2 1 6 6 C 1.53945 * 87.29527 * 220.78881 * 5 3 2 7 7 H 1.08997 * 113.66471 * 270.17195 * 6 5 3 8 8 N 1.46494 * 113.66340 * 139.20505 * 6 5 3 9 9 C 1.34777 * 120.00251 * 104.50698 * 8 6 5 10 10 O 1.21549 * 119.99662 * 359.97438 * 9 8 6 11 11 C 1.47886 * 120.00142 * 180.02562 * 9 8 6 12 12 C 1.39923 * 120.02534 * 359.97438 * 11 9 8 13 13 C 1.38327 * 120.35446 * 179.74326 * 12 11 9 14 14 C 1.37745 * 120.41710 * 0.28053 * 13 12 11 15 15 C 1.40750 * 120.04046 * 359.97438 * 14 13 12 16 16 C 1.41437 * 120.18095 * 180.02562 * 15 14 13 17 17 H 1.07997 * 119.99766 * 24.45670 * 16 15 14 18 18 C 1.39937 * 119.99936 * 204.45288 * 16 15 14 19 19 N 1.30822 * 119.99963 * 17.87369 * 18 16 15 20 20 Si 1.86797 * 119.99825 * 197.87493 * 18 16 15 21 21 H 1.48507 * 109.47384 * 94.69357 * 20 18 16 22 22 H 1.48501 * 109.47411 * 214.69330 * 20 18 16 23 23 H 1.48506 * 109.47326 * 334.69263 * 20 18 16 24 24 C 1.38992 * 120.02580 * 180.27525 * 11 9 8 25 25 C 1.52905 * 113.66811 * 153.30573 * 3 2 1 26 26 C 1.52905 * 121.13920 * 265.09617 * 25 3 2 27 27 C 1.53951 * 86.78299 * 100.81103 * 26 25 3 28 28 C 1.52909 * 121.13211 * 13.65580 * 25 3 2 29 29 H 1.08994 * 109.46930 * 180.02562 * 1 2 3 30 30 H 1.08997 * 109.47062 * 300.00365 * 1 2 3 31 31 H 1.08995 * 109.47054 * 59.99959 * 1 2 3 32 32 H 1.09003 * 113.57818 * 106.18011 * 5 3 2 33 33 H 1.08997 * 113.64607 * 335.40417 * 5 3 2 34 34 H 0.97006 * 119.99705 * 284.50396 * 8 6 5 35 35 H 1.08000 * 119.82079 * 0.02694 * 12 11 9 36 36 H 1.08007 * 119.78729 * 180.25371 * 13 12 11 37 37 H 1.07998 * 119.98638 * 179.97438 * 14 13 12 38 38 H 0.97002 * 119.99730 * 179.97438 * 19 18 16 39 39 H 1.08004 * 120.20152 * 359.97438 * 24 11 9 40 40 H 1.08997 * 113.66589 * 215.28529 * 26 25 3 41 41 H 1.09002 * 113.66105 * 346.34011 * 26 25 3 42 42 H 1.09001 * 113.58183 * 270.13741 * 27 26 25 43 43 H 1.09002 * 113.57986 * 139.34102 * 27 26 25 44 44 H 1.09003 * 113.65946 * 13.65348 * 28 25 3 45 45 H 1.08997 * 113.66486 * 144.71288 * 28 25 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 1 1.3311 2.0718 0.3735 5 6 2.6917 1.6783 -1.3292 6 6 3.8159 2.3131 -0.4906 7 1 3.6463 3.3638 -0.2554 8 7 5.1587 2.0568 -1.0173 9 6 5.8268 3.0328 -1.6635 10 8 5.3149 4.1255 -1.8098 11 6 7.1820 2.7738 -2.1957 12 6 7.7715 1.5159 -2.0280 13 6 9.0367 1.2647 -2.5276 14 6 9.7332 2.2509 -3.1906 15 6 9.1588 3.5240 -3.3643 16 6 9.8711 4.5387 -4.0450 17 1 10.6390 4.2746 -4.7570 18 6 9.5808 5.8848 -3.7961 19 7 8.9260 6.2237 -2.7155 20 14 10.1282 7.1976 -5.0069 21 1 9.0204 7.4937 -5.9506 22 1 10.4915 8.4329 -4.2671 23 1 11.3079 6.7102 -5.7659 24 6 7.8738 3.7817 -2.8572 25 6 3.4030 1.3571 0.6291 26 6 3.5931 1.7321 2.0992 27 6 3.7469 0.2251 2.3739 28 6 4.1927 0.0777 0.9077 29 1 -0.3633 -1.0276 0.0005 30 1 -0.3633 0.5139 0.8899 31 1 -0.3633 0.5138 -0.8899 32 1 2.1282 2.4000 -1.9207 33 1 3.0159 0.8158 -1.9114 34 1 5.5670 1.1846 -0.9008 35 1 7.2339 0.7357 -1.5098 36 1 9.4813 0.2891 -2.3966 37 1 10.7208 2.0472 -3.5775 38 1 8.7251 7.1569 -2.5428 39 1 7.4245 4.7555 -2.9850 40 1 4.4995 2.3065 2.2906 41 1 2.7068 2.1719 2.5566 42 1 2.8047 -0.2761 2.5956 43 1 4.5312 -0.0091 3.0937 44 1 3.7854 -0.8041 0.4131 45 1 5.2676 0.1871 0.7642 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000458182950.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:30:18 Heat of formation + Delta-G solvation = -38.309162 kcal Electronic energy + Delta-G solvation = -26109.689881 eV Core-core repulsion = 22478.420430 eV Total energy + Delta-G solvation = -3631.269452 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 315.162 amu Computer time = 1.13 seconds Orbital eigenvalues (eV) -42.08791 -40.47491 -38.75859 -37.91011 -36.02787 -35.60607 -33.89232 -31.78753 -31.26658 -27.85172 -27.23624 -26.73046 -25.93324 -25.29198 -23.60789 -22.80143 -21.95907 -21.20384 -19.72613 -19.21918 -18.18002 -17.75033 -17.05202 -16.82989 -16.65192 -16.51913 -16.09342 -15.80801 -15.55766 -15.23298 -15.09527 -14.78627 -14.39964 -14.28484 -13.97071 -13.49334 -13.37485 -13.17284 -13.05764 -12.94763 -12.81891 -12.62691 -12.53792 -12.40678 -12.18275 -12.05354 -11.88200 -11.51996 -11.45542 -11.31747 -11.15012 -11.09040 -10.75139 -10.33470 -10.00753 -9.47509 -9.39129 -8.67299 -6.38759 0.36928 1.00058 1.35940 1.47310 1.50768 2.08197 2.15811 2.18887 2.77356 2.89376 3.30606 3.43907 3.60030 3.68613 3.77091 3.84761 3.93384 4.02054 4.24964 4.39418 4.43289 4.51878 4.57814 4.58231 4.60787 4.69043 4.82502 4.85963 4.89183 4.89817 4.95294 5.02868 5.08348 5.11017 5.17568 5.18753 5.30676 5.37924 5.50231 5.53366 5.57863 5.85902 5.92258 6.04797 6.27806 6.28460 6.50804 6.67892 6.87289 6.93983 7.30269 8.29539 Molecular weight = 315.16amu Principal moments of inertia in cm(-1) A = 0.021651 B = 0.003017 C = 0.002865 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1292.933403 B = 9279.862337 C = 9771.192687 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.023 3.977 2 O -0.382 6.382 3 C 0.103 3.897 4 H 0.107 0.893 5 C -0.166 4.166 6 C 0.125 3.875 7 H 0.095 0.905 8 N -0.697 5.697 9 C 0.562 3.438 10 O -0.589 6.589 11 C -0.140 4.140 12 C -0.198 4.198 13 C -0.095 4.095 14 C -0.217 4.217 15 C 0.067 3.933 16 C -0.497 4.497 17 H 0.084 0.916 18 C 0.029 3.971 19 N -0.824 5.824 20 Si 0.983 3.017 21 H -0.267 1.267 22 H -0.268 1.268 23 H -0.250 1.250 24 C -0.130 4.130 25 C -0.103 4.103 26 C -0.128 4.128 27 C -0.122 4.122 28 C -0.113 4.113 29 H 0.097 0.903 30 H 0.053 0.947 31 H 0.044 0.956 32 H 0.070 0.930 33 H 0.089 0.911 34 H 0.410 0.590 35 H 0.133 0.867 36 H 0.139 0.861 37 H 0.109 0.891 38 H 0.286 0.714 39 H 0.099 0.901 40 H 0.076 0.924 41 H 0.080 0.920 42 H 0.088 0.912 43 H 0.075 0.925 44 H 0.079 0.921 45 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.887 -11.997 8.565 20.252 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 O -0.301 6.301 3 C 0.045 3.955 4 H 0.125 0.875 5 C -0.205 4.205 6 C 0.020 3.980 7 H 0.113 0.887 8 N -0.349 5.349 9 C 0.352 3.648 10 O -0.470 6.470 11 C -0.143 4.143 12 C -0.218 4.218 13 C -0.113 4.113 14 C -0.237 4.237 15 C 0.065 3.935 16 C -0.526 4.526 17 H 0.102 0.898 18 C -0.186 4.186 19 N -0.450 5.450 20 Si 0.804 3.196 21 H -0.192 1.192 22 H -0.193 1.193 23 H -0.173 1.173 24 C -0.151 4.151 25 C -0.104 4.104 26 C -0.165 4.165 27 C -0.160 4.160 28 C -0.151 4.151 29 H 0.116 0.884 30 H 0.072 0.928 31 H 0.063 0.937 32 H 0.089 0.911 33 H 0.107 0.893 34 H 0.249 0.751 35 H 0.150 0.850 36 H 0.157 0.843 37 H 0.127 0.873 38 H 0.097 0.903 39 H 0.117 0.883 40 H 0.095 0.905 41 H 0.098 0.902 42 H 0.107 0.893 43 H 0.093 0.907 44 H 0.098 0.902 45 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -14.233 -11.219 8.622 20.069 hybrid contribution 0.304 0.991 -0.615 1.206 sum -13.928 -10.228 8.007 19.045 Atomic orbital electron populations 1.22980 0.79793 1.03836 1.00718 1.87903 1.21059 1.26632 1.94493 1.23027 0.92292 0.85915 0.94304 0.87489 1.23949 0.97407 1.01062 0.98122 1.22042 0.81156 0.99446 0.95337 0.88712 1.45624 1.17211 1.15056 1.57042 1.18768 0.85602 0.83559 0.76876 1.90658 1.70428 1.25934 1.59987 1.19794 0.93877 0.96485 1.04128 1.20815 0.97665 0.95084 1.08234 1.20916 0.94394 0.98697 0.97254 1.21408 1.00212 0.94957 1.07128 1.17957 0.91131 0.93477 0.90965 1.19877 1.19130 0.91108 1.22476 0.89764 1.26864 0.93279 1.02278 0.96191 1.69894 1.31239 1.20554 1.23310 0.85174 0.79608 0.76558 0.78285 1.19220 1.19302 1.17334 1.21442 0.94649 0.97911 1.01060 1.23212 0.95663 0.97346 0.94220 1.22793 1.02390 0.97715 0.93601 1.22715 1.02099 0.95286 0.95857 1.22477 0.99082 0.95910 0.97597 0.88417 0.92828 0.93746 0.91090 0.89274 0.75064 0.84973 0.84337 0.87291 0.90303 0.88306 0.90542 0.90171 0.89311 0.90679 0.90224 0.89976 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.29 10.86 113.37 1.23 1.52 16 2 O -0.38 -7.21 9.90 -148.98 -1.48 -8.68 16 3 C 0.10 2.01 4.17 30.89 0.13 2.14 16 4 H 0.11 1.74 7.90 -2.38 -0.02 1.72 16 5 C -0.17 -4.07 7.72 31.23 0.24 -3.83 16 6 C 0.13 3.54 4.08 45.28 0.18 3.72 16 7 H 0.09 3.07 7.54 -2.39 -0.02 3.05 16 8 N -0.70 -23.00 5.24 -444.00 -2.33 -25.33 16 9 C 0.56 25.25 7.77 86.80 0.67 25.93 16 10 O -0.59 -31.07 15.97 -3.87 -0.06 -31.14 16 11 C -0.14 -6.73 5.87 -20.13 -0.12 -6.85 16 12 C -0.20 -7.93 9.55 22.70 0.22 -7.71 16 13 C -0.09 -3.79 10.01 22.17 0.22 -3.57 16 14 C -0.22 -10.25 9.78 22.77 0.22 -10.03 16 15 C 0.07 3.68 5.57 -21.32 -0.12 3.56 16 16 C -0.50 -27.30 9.05 23.47 0.21 -27.09 16 17 H 0.08 4.37 7.91 -2.91 -0.02 4.35 16 18 C 0.03 1.52 5.14 85.25 0.44 1.96 16 19 N -0.82 -46.44 10.95 21.82 0.24 -46.20 16 20 Si 0.98 40.02 29.59 68.60 2.03 42.05 16 21 H -0.27 -10.75 7.11 99.48 0.71 -10.05 16 22 H -0.27 -10.42 7.11 99.48 0.71 -9.71 16 23 H -0.25 -9.59 7.11 99.48 0.71 -8.89 16 24 C -0.13 -7.33 8.24 23.01 0.19 -7.14 16 25 C -0.10 -2.18 1.07 -52.31 -0.06 -2.24 16 26 C -0.13 -2.41 7.84 30.88 0.24 -2.17 16 27 C -0.12 -2.01 8.08 31.23 0.25 -1.76 16 28 C -0.11 -2.18 6.87 30.89 0.21 -1.96 16 29 H 0.10 0.96 8.14 -2.39 -0.02 0.94 16 30 H 0.05 0.54 8.14 -2.39 -0.02 0.52 16 31 H 0.04 0.54 8.14 -2.39 -0.02 0.52 16 32 H 0.07 1.76 8.14 -2.39 -0.02 1.74 16 33 H 0.09 2.26 8.14 -2.39 -0.02 2.24 16 34 H 0.41 11.48 4.94 -92.70 -0.46 11.02 16 35 H 0.13 4.07 6.38 -2.91 -0.02 4.06 16 36 H 0.14 4.31 8.06 -2.91 -0.02 4.29 16 37 H 0.11 4.73 8.06 -2.91 -0.02 4.71 16 38 H 0.29 14.85 8.30 -92.71 -0.77 14.08 16 39 H 0.10 6.20 5.74 -2.91 -0.02 6.18 16 40 H 0.08 1.63 8.14 -2.39 -0.02 1.61 16 41 H 0.08 1.30 8.14 -2.39 -0.02 1.28 16 42 H 0.09 1.35 8.14 -2.39 -0.02 1.33 16 43 H 0.07 1.13 8.14 -2.39 -0.02 1.11 16 44 H 0.08 1.54 7.65 -2.39 -0.02 1.53 16 45 H 0.08 1.60 6.96 -2.39 -0.02 1.59 16 Total: -1.00 -68.91 367.36 3.32 -65.59 By element: Atomic # 1 Polarization: 38.67 SS G_CDS: 0.54 Total: 39.21 kcal Atomic # 6 Polarization: -39.89 SS G_CDS: 4.38 Total: -35.51 kcal Atomic # 7 Polarization: -69.44 SS G_CDS: -2.09 Total: -71.52 kcal Atomic # 8 Polarization: -38.28 SS G_CDS: -1.54 Total: -39.82 kcal Atomic # 14 Polarization: 40.02 SS G_CDS: 2.03 Total: 42.05 kcal Total: -68.91 3.32 -65.59 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000458182950.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.280 kcal (2) G-P(sol) polarization free energy of solvation -68.912 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.632 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.322 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.589 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.309 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.13 seconds