Wall clock time and date at job start Tue Mar 31 2020 11:29:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42907 * 1 3 3 C 1.42902 * 113.99448 * 2 1 4 4 C 1.53002 * 109.46625 * 180.02562 * 3 2 1 5 5 N 1.46498 * 109.47277 * 65.00367 * 4 3 2 6 6 C 1.36939 * 120.00043 * 266.92696 * 5 4 3 7 7 H 1.07995 * 119.99491 * 321.66509 * 6 5 4 8 8 C 1.38811 * 120.00150 * 141.66643 * 6 5 4 9 9 N 1.31621 * 119.99866 * 340.24567 * 8 6 5 10 10 Si 1.86797 * 120.00019 * 160.24126 * 8 6 5 11 11 H 1.48497 * 109.47136 * 89.99692 * 10 8 6 12 12 H 1.48497 * 109.47141 * 210.00331 * 10 8 6 13 13 H 1.48502 * 109.46953 * 330.00180 * 10 8 6 14 14 C 1.46499 * 120.00074 * 86.92392 * 5 4 3 15 15 C 1.52994 * 109.47438 * 89.99988 * 14 5 4 16 16 O 1.42902 * 109.47015 * 64.99911 * 15 14 5 17 17 C 1.35808 * 116.99957 * 179.97438 * 16 15 14 18 18 C 1.36662 * 120.22710 * 0.02571 * 17 16 15 19 19 C 1.39197 * 120.91565 * 179.97438 * 18 17 16 20 20 C 1.36173 * 121.06574 * 0.06494 * 19 18 17 21 21 C 1.40528 * 119.76519 * 359.95211 * 20 19 18 22 22 C 1.40552 * 121.27333 * 180.02562 * 21 20 19 23 23 C 1.36097 * 119.64990 * 179.97438 * 22 21 20 24 24 C 1.39353 * 120.98336 * 359.97438 * 23 22 21 25 25 C 1.36141 * 120.97283 * 0.02562 * 24 23 22 26 26 C 1.40417 * 119.66300 * 359.97438 * 25 24 23 27 27 H 1.09001 * 109.47355 * 59.99628 * 1 2 3 28 28 H 1.08996 * 109.46669 * 180.02562 * 1 2 3 29 29 H 1.09001 * 109.46960 * 299.99176 * 1 2 3 30 30 H 1.09002 * 109.47370 * 60.00633 * 3 2 1 31 31 H 1.08996 * 109.47582 * 300.00072 * 3 2 1 32 32 H 1.08994 * 109.47196 * 304.99792 * 4 3 2 33 33 H 1.09000 * 109.46815 * 185.00273 * 4 3 2 34 34 H 0.97000 * 119.99318 * 180.02562 * 9 8 6 35 35 H 1.09004 * 109.47246 * 330.00095 * 14 5 4 36 36 H 1.08998 * 109.47175 * 210.00280 * 14 5 4 37 37 H 1.09001 * 109.47424 * 304.99991 * 15 14 5 38 38 H 1.09001 * 109.47454 * 185.00342 * 15 14 5 39 39 H 1.07996 * 119.54308 * 359.97438 * 18 17 16 40 40 H 1.08007 * 119.46358 * 180.02562 * 19 18 17 41 41 H 1.07993 * 120.11532 * 180.23679 * 20 19 18 42 42 H 1.08003 * 120.17375 * 359.95738 * 22 21 20 43 43 H 1.08007 * 119.51006 * 179.97438 * 23 22 21 44 44 H 1.08000 * 119.51921 * 179.97438 * 24 23 22 45 45 H 1.08003 * 120.16737 * 180.02562 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1847 -0.0006 5 7 3.9757 0.5646 -1.2528 6 6 4.1574 -0.7911 -1.3185 7 1 4.5838 -1.3200 -0.4791 8 6 3.7935 -1.4854 -2.4641 9 7 2.9414 -0.9523 -3.3140 10 14 4.5131 -3.1762 -2.7997 11 1 3.6415 -4.2144 -2.1935 12 1 4.5984 -3.3957 -4.2659 13 1 5.8717 -3.2625 -2.2065 14 6 4.2215 1.3948 -2.4345 15 6 5.6825 1.8487 -2.4440 16 8 6.5337 0.7112 -2.5974 17 6 7.8718 0.9418 -2.6262 18 6 8.3530 2.2157 -2.5108 19 6 9.7216 2.4684 -2.5379 20 6 10.6204 1.4555 -2.6814 21 6 10.1659 0.1314 -2.8035 22 6 11.0656 -0.9381 -2.9525 23 6 10.5891 -2.2077 -3.0675 24 6 9.2199 -2.4654 -3.0393 25 6 8.3195 -1.4543 -2.8965 26 6 8.7738 -0.1312 -2.7749 27 1 -0.3634 0.5139 -0.8899 28 1 -0.3632 -1.0277 0.0005 29 1 -0.3633 0.5137 0.8901 30 1 1.6886 1.8464 0.8900 31 1 1.6886 1.8465 -0.8899 32 1 3.8514 0.5684 0.8409 33 1 3.9784 2.1766 0.0890 34 1 2.6869 -1.4376 -4.1143 35 1 3.5699 2.2682 -2.4070 36 1 4.0151 0.8157 -3.3346 37 1 5.9131 2.3510 -1.5045 38 1 5.8436 2.5376 -3.2733 39 1 7.6619 3.0377 -2.3969 40 1 10.0762 3.4842 -2.4443 41 1 11.6790 1.6687 -2.6966 42 1 12.1294 -0.7533 -2.9759 43 1 11.2825 -3.0278 -3.1823 44 1 8.8677 -3.4820 -3.1330 45 1 7.2612 -1.6688 -2.8759 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000459544650.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:29:24 Heat of formation + Delta-G solvation = -10.269179 kcal Electronic energy + Delta-G solvation = -26712.199690 eV Core-core repulsion = 23082.146144 eV Total energy + Delta-G solvation = -3630.053547 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 315.162 amu Computer time = 1.13 seconds Orbital eigenvalues (eV) -40.32086 -38.16316 -37.10564 -35.78492 -35.08611 -31.87529 -31.40614 -30.18565 -29.59889 -28.25625 -27.50227 -25.55608 -23.99819 -23.04864 -22.90048 -21.95771 -21.19980 -19.80681 -17.63200 -17.16871 -16.66520 -16.34157 -15.62475 -15.38633 -15.27898 -14.95917 -14.61772 -14.31304 -13.99446 -13.84171 -13.51527 -13.44335 -13.31519 -12.82494 -12.71593 -12.46990 -11.87742 -11.76011 -11.55901 -11.39615 -11.19286 -10.98834 -10.86064 -10.79548 -10.67443 -10.49135 -10.47717 -10.18589 -9.95980 -9.78401 -9.74489 -9.03949 -8.75279 -8.40161 -8.33462 -7.18018 -6.47656 -5.64177 -3.18611 0.94438 1.25492 2.40737 3.30417 3.45326 3.52521 3.54400 3.80886 4.42294 4.60285 4.72083 4.92366 5.08047 5.17458 5.27143 5.36164 5.39601 5.50014 5.53920 5.67555 5.69804 5.78451 5.82183 5.90898 5.94129 5.97498 6.12264 6.19724 6.23908 6.25625 6.28458 6.34025 6.34956 6.44658 6.45733 6.51697 6.62119 6.72298 6.83366 6.89395 6.91878 7.05544 7.26090 7.58863 7.97440 8.07075 8.12963 8.65952 9.29777 9.92417 10.47884 11.39844 Molecular weight = 315.16amu Principal moments of inertia in cm(-1) A = 0.015222 B = 0.004569 C = 0.003763 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1838.966859 B = 6126.959795 C = 7438.824552 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.037 3.963 2 O -0.351 6.351 3 C 0.047 3.953 4 C 0.143 3.857 5 N -0.570 5.570 6 C -0.225 4.225 7 H 0.056 0.944 8 C 0.021 3.979 9 N -0.891 5.891 10 Si 0.884 3.116 11 H -0.290 1.290 12 H -0.291 1.291 13 H -0.273 1.273 14 C 0.142 3.858 15 C 0.043 3.957 16 O -0.265 6.265 17 C 0.171 3.829 18 C -0.250 4.250 19 C -0.065 4.065 20 C -0.173 4.173 21 C -0.014 4.014 22 C -0.132 4.132 23 C -0.100 4.100 24 C -0.147 4.147 25 C -0.065 4.065 26 C -0.078 4.078 27 H 0.031 0.969 28 H 0.074 0.926 29 H 0.021 0.979 30 H 0.019 0.981 31 H 0.035 0.965 32 H 0.054 0.946 33 H 0.045 0.955 34 H 0.249 0.751 35 H 0.047 0.953 36 H 0.108 0.892 37 H 0.045 0.955 38 H 0.043 0.957 39 H 0.124 0.876 40 H 0.117 0.883 41 H 0.120 0.880 42 H 0.123 0.877 43 H 0.118 0.882 44 H 0.119 0.881 45 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.199 5.786 1.449 10.963 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 O -0.268 6.268 3 C -0.032 4.032 4 C 0.016 3.984 5 N -0.289 5.289 6 C -0.355 4.355 7 H 0.074 0.926 8 C -0.178 4.178 9 N -0.534 5.534 10 Si 0.714 3.286 11 H -0.217 1.217 12 H -0.217 1.217 13 H -0.199 1.199 14 C 0.015 3.985 15 C -0.034 4.034 16 O -0.175 6.175 17 C 0.122 3.878 18 C -0.269 4.269 19 C -0.083 4.083 20 C -0.191 4.191 21 C -0.014 4.014 22 C -0.150 4.150 23 C -0.118 4.118 24 C -0.165 4.165 25 C -0.082 4.082 26 C -0.078 4.078 27 H 0.050 0.950 28 H 0.092 0.908 29 H 0.040 0.960 30 H 0.037 0.963 31 H 0.054 0.946 32 H 0.072 0.928 33 H 0.064 0.936 34 H 0.059 0.941 35 H 0.065 0.935 36 H 0.125 0.875 37 H 0.063 0.937 38 H 0.061 0.939 39 H 0.142 0.858 40 H 0.135 0.865 41 H 0.138 0.862 42 H 0.141 0.859 43 H 0.136 0.864 44 H 0.137 0.863 45 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges 9.105 5.354 1.291 10.641 hybrid contribution -0.037 -0.287 -0.219 0.362 sum 9.067 5.068 1.072 10.442 Atomic orbital electron populations 1.22563 0.83866 1.01488 0.98140 1.88171 1.16904 1.26969 1.94762 1.23303 0.98066 0.84797 0.97060 1.21072 0.89532 0.96176 0.91622 1.43668 1.75390 1.03735 1.06132 1.18755 1.33261 0.82368 1.01091 0.92639 1.24985 0.96354 0.96819 0.99620 1.69928 1.31947 1.38265 1.13306 0.86630 0.79626 0.85278 0.77095 1.21721 1.21691 1.19854 1.21057 0.87034 0.94615 0.95818 1.23987 0.94302 0.86821 0.98335 1.86421 1.11334 1.35394 1.84396 1.19067 0.85058 0.92529 0.91135 1.20792 0.96608 0.96030 1.13480 1.20497 0.92477 0.98706 0.96598 1.20687 0.99188 0.91656 1.07589 1.17870 0.91527 0.94015 0.98011 1.20849 0.98678 0.92261 1.03196 1.20836 0.95500 0.96721 0.98740 1.20806 0.93077 0.99431 1.03214 1.21338 1.01280 0.91286 0.94323 1.17536 0.91550 0.92819 1.05925 0.95032 0.90761 0.96007 0.96265 0.94622 0.92751 0.93632 0.94052 0.93520 0.87458 0.93670 0.93878 0.85772 0.86544 0.86231 0.85911 0.86405 0.86269 0.84171 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.66 11.01 101.05 1.11 1.77 16 2 O -0.35 -7.87 10.32 -35.23 -0.36 -8.23 16 3 C 0.05 0.93 6.28 37.16 0.23 1.17 16 4 C 0.14 2.92 6.08 -4.04 -0.02 2.89 16 5 N -0.57 -13.52 2.37 -173.25 -0.41 -13.93 16 6 C -0.22 -6.04 8.61 -15.06 -0.13 -6.17 16 7 H 0.06 1.55 7.90 -52.49 -0.41 1.14 16 8 C 0.02 0.58 4.99 -17.43 -0.09 0.50 16 9 N -0.89 -25.27 11.42 55.49 0.63 -24.64 16 10 Si 0.88 21.84 28.97 -169.99 -4.93 16.92 16 11 H -0.29 -7.29 7.11 56.52 0.40 -6.89 16 12 H -0.29 -7.24 7.11 56.52 0.40 -6.84 16 13 H -0.27 -6.50 6.55 56.52 0.37 -6.13 16 14 C 0.14 3.11 5.73 -4.05 -0.02 3.09 16 15 C 0.04 0.82 5.08 37.15 0.19 1.01 16 16 O -0.27 -5.67 8.84 -19.14 -0.17 -5.84 16 17 C 0.17 3.26 6.67 -39.12 -0.26 2.99 16 18 C -0.25 -4.05 8.99 -39.79 -0.36 -4.40 16 19 C -0.06 -0.90 9.94 -39.97 -0.40 -1.30 16 20 C -0.17 -2.42 9.77 -39.46 -0.39 -2.81 16 21 C -0.01 -0.23 5.74 -106.84 -0.61 -0.84 16 22 C -0.13 -1.82 9.77 -39.48 -0.39 -2.21 16 23 C -0.10 -1.38 9.95 -39.94 -0.40 -1.78 16 24 C -0.15 -2.40 9.95 -39.92 -0.40 -2.79 16 25 C -0.06 -1.24 9.56 -39.52 -0.38 -1.62 16 26 C -0.08 -1.46 5.75 -106.73 -0.61 -2.07 16 27 H 0.03 0.55 8.14 -51.93 -0.42 0.13 16 28 H 0.07 1.25 8.14 -51.93 -0.42 0.82 16 29 H 0.02 0.32 8.14 -51.93 -0.42 -0.10 16 30 H 0.02 0.32 8.14 -51.93 -0.42 -0.10 16 31 H 0.04 0.72 8.14 -51.93 -0.42 0.30 16 32 H 0.05 1.14 8.01 -51.93 -0.42 0.72 16 33 H 0.05 0.80 8.10 -51.93 -0.42 0.38 16 34 H 0.25 6.96 8.31 -40.82 -0.34 6.62 16 35 H 0.05 0.93 8.07 -51.93 -0.42 0.51 16 36 H 0.11 2.75 5.51 -51.93 -0.29 2.46 16 37 H 0.05 0.80 7.66 -51.93 -0.40 0.40 16 38 H 0.04 0.72 7.65 -51.93 -0.40 0.32 16 39 H 0.12 1.82 6.21 -52.49 -0.33 1.50 16 40 H 0.12 1.27 8.06 -52.48 -0.42 0.85 16 41 H 0.12 1.33 8.06 -52.49 -0.42 0.90 16 42 H 0.12 1.32 8.06 -52.48 -0.42 0.89 16 43 H 0.12 1.26 8.06 -52.48 -0.42 0.83 16 44 H 0.12 1.75 8.06 -52.49 -0.42 1.33 16 45 H 0.14 3.04 6.39 -52.48 -0.34 2.71 16 LS Contribution 371.35 15.07 5.60 5.60 Total: -1.00 -30.58 371.35 -9.36 -39.94 By element: Atomic # 1 Polarization: 9.57 SS G_CDS: -6.81 Total: 2.76 kcal Atomic # 6 Polarization: -9.66 SS G_CDS: -2.92 Total: -12.57 kcal Atomic # 7 Polarization: -38.80 SS G_CDS: 0.22 Total: -38.57 kcal Atomic # 8 Polarization: -13.53 SS G_CDS: -0.53 Total: -14.07 kcal Atomic # 14 Polarization: 21.84 SS G_CDS: -4.93 Total: 16.92 kcal Total LS contribution 5.60 Total: 5.60 kcal Total: -30.58 -9.36 -39.94 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000459544650.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.672 kcal (2) G-P(sol) polarization free energy of solvation -30.580 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.908 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.361 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.941 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.269 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.13 seconds