Wall clock time and date at job start Tue Mar 31 2020 11:29:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42907 * 1 3 3 C 1.42902 * 113.99448 * 2 1 4 4 C 1.53002 * 109.46625 * 180.02562 * 3 2 1 5 5 N 1.46498 * 109.47277 * 65.00367 * 4 3 2 6 6 C 1.36939 * 120.00043 * 266.92696 * 5 4 3 7 7 H 1.07995 * 119.99491 * 321.66509 * 6 5 4 8 8 C 1.38811 * 120.00150 * 141.66643 * 6 5 4 9 9 N 1.31621 * 119.99866 * 340.24567 * 8 6 5 10 10 Si 1.86797 * 120.00019 * 160.24126 * 8 6 5 11 11 H 1.48497 * 109.47136 * 89.99692 * 10 8 6 12 12 H 1.48497 * 109.47141 * 210.00331 * 10 8 6 13 13 H 1.48502 * 109.46953 * 330.00180 * 10 8 6 14 14 C 1.46499 * 120.00074 * 86.92392 * 5 4 3 15 15 C 1.52994 * 109.47438 * 89.99988 * 14 5 4 16 16 O 1.42902 * 109.47015 * 64.99911 * 15 14 5 17 17 C 1.35808 * 116.99957 * 179.97438 * 16 15 14 18 18 C 1.36662 * 120.22710 * 0.02571 * 17 16 15 19 19 C 1.39197 * 120.91565 * 179.97438 * 18 17 16 20 20 C 1.36173 * 121.06574 * 0.06494 * 19 18 17 21 21 C 1.40528 * 119.76519 * 359.95211 * 20 19 18 22 22 C 1.40552 * 121.27333 * 180.02562 * 21 20 19 23 23 C 1.36097 * 119.64990 * 179.97438 * 22 21 20 24 24 C 1.39353 * 120.98336 * 359.97438 * 23 22 21 25 25 C 1.36141 * 120.97283 * 0.02562 * 24 23 22 26 26 C 1.40417 * 119.66300 * 359.97438 * 25 24 23 27 27 H 1.09001 * 109.47355 * 59.99628 * 1 2 3 28 28 H 1.08996 * 109.46669 * 180.02562 * 1 2 3 29 29 H 1.09001 * 109.46960 * 299.99176 * 1 2 3 30 30 H 1.09002 * 109.47370 * 60.00633 * 3 2 1 31 31 H 1.08996 * 109.47582 * 300.00072 * 3 2 1 32 32 H 1.08994 * 109.47196 * 304.99792 * 4 3 2 33 33 H 1.09000 * 109.46815 * 185.00273 * 4 3 2 34 34 H 0.97000 * 119.99318 * 180.02562 * 9 8 6 35 35 H 1.09004 * 109.47246 * 330.00095 * 14 5 4 36 36 H 1.08998 * 109.47175 * 210.00280 * 14 5 4 37 37 H 1.09001 * 109.47424 * 304.99991 * 15 14 5 38 38 H 1.09001 * 109.47454 * 185.00342 * 15 14 5 39 39 H 1.07996 * 119.54308 * 359.97438 * 18 17 16 40 40 H 1.08007 * 119.46358 * 180.02562 * 19 18 17 41 41 H 1.07993 * 120.11532 * 180.23679 * 20 19 18 42 42 H 1.08003 * 120.17375 * 359.95738 * 22 21 20 43 43 H 1.08007 * 119.51006 * 179.97438 * 23 22 21 44 44 H 1.08000 * 119.51921 * 179.97438 * 24 23 22 45 45 H 1.08003 * 120.16737 * 180.02562 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1847 -0.0006 5 7 3.9757 0.5646 -1.2528 6 6 4.1574 -0.7911 -1.3185 7 1 4.5838 -1.3200 -0.4791 8 6 3.7935 -1.4854 -2.4641 9 7 2.9414 -0.9523 -3.3140 10 14 4.5131 -3.1762 -2.7997 11 1 3.6415 -4.2144 -2.1935 12 1 4.5984 -3.3957 -4.2659 13 1 5.8717 -3.2625 -2.2065 14 6 4.2215 1.3948 -2.4345 15 6 5.6825 1.8487 -2.4440 16 8 6.5337 0.7112 -2.5974 17 6 7.8718 0.9418 -2.6262 18 6 8.3530 2.2157 -2.5108 19 6 9.7216 2.4684 -2.5379 20 6 10.6204 1.4555 -2.6814 21 6 10.1659 0.1314 -2.8035 22 6 11.0656 -0.9381 -2.9525 23 6 10.5891 -2.2077 -3.0675 24 6 9.2199 -2.4654 -3.0393 25 6 8.3195 -1.4543 -2.8965 26 6 8.7738 -0.1312 -2.7749 27 1 -0.3634 0.5139 -0.8899 28 1 -0.3632 -1.0277 0.0005 29 1 -0.3633 0.5137 0.8901 30 1 1.6886 1.8464 0.8900 31 1 1.6886 1.8465 -0.8899 32 1 3.8514 0.5684 0.8409 33 1 3.9784 2.1766 0.0890 34 1 2.6869 -1.4376 -4.1143 35 1 3.5699 2.2682 -2.4070 36 1 4.0151 0.8157 -3.3346 37 1 5.9131 2.3510 -1.5045 38 1 5.8436 2.5376 -3.2733 39 1 7.6619 3.0377 -2.3969 40 1 10.0762 3.4842 -2.4443 41 1 11.6790 1.6687 -2.6966 42 1 12.1294 -0.7533 -2.9759 43 1 11.2825 -3.0278 -3.1823 44 1 8.8677 -3.4820 -3.1330 45 1 7.2612 -1.6688 -2.8759 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000459544650.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:29:23 Heat of formation + Delta-G solvation = -26.992437 kcal Electronic energy + Delta-G solvation = -26712.924865 eV Core-core repulsion = 23082.146144 eV Total energy + Delta-G solvation = -3630.778721 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 315.162 amu Computer time = 1.08 seconds Orbital eigenvalues (eV) -41.56344 -39.55655 -38.70294 -37.18774 -36.64406 -33.48743 -33.05576 -31.47762 -31.04093 -29.55682 -29.19140 -27.10384 -25.73042 -24.49871 -24.16266 -23.35447 -22.52641 -21.50208 -18.93848 -18.76835 -18.18978 -17.61935 -17.20751 -16.85856 -16.79609 -16.43433 -16.33187 -15.78228 -15.47519 -15.33387 -15.07469 -14.89860 -14.64331 -14.23203 -14.01192 -13.90307 -13.40666 -13.14278 -13.11052 -12.84961 -12.76943 -12.59721 -12.54635 -12.42147 -12.10900 -12.01887 -11.92059 -11.78922 -11.59123 -11.56297 -11.44209 -10.42837 -10.33293 -10.28872 -9.58900 -8.44077 -8.41304 -7.71224 -5.27317 -0.26770 0.05928 1.18393 1.40197 1.43125 1.51799 2.13008 2.45516 2.57712 3.20674 3.21057 3.44791 3.67250 3.79927 3.94399 3.99870 4.13692 4.24013 4.37536 4.39042 4.42958 4.44111 4.53028 4.56473 4.57200 4.62042 4.62246 4.69582 4.71578 4.80237 4.84708 4.91855 4.94896 5.07411 5.18146 5.21136 5.25987 5.36030 5.52820 5.65361 5.66647 5.73343 5.81178 5.88266 6.10563 6.53096 6.65564 6.74889 7.30640 7.96084 8.45886 9.27375 Molecular weight = 315.16amu Principal moments of inertia in cm(-1) A = 0.015222 B = 0.004569 C = 0.003763 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1838.966859 B = 6126.959795 C = 7438.824552 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 O -0.395 6.395 3 C 0.051 3.949 4 C 0.139 3.861 5 N -0.583 5.583 6 C -0.214 4.214 7 H 0.035 0.965 8 C -0.018 4.018 9 N -0.913 5.913 10 Si 0.923 3.077 11 H -0.293 1.293 12 H -0.296 1.296 13 H -0.269 1.269 14 C 0.143 3.857 15 C 0.053 3.947 16 O -0.304 6.304 17 C 0.125 3.875 18 C -0.239 4.239 19 C -0.073 4.073 20 C -0.157 4.157 21 C -0.035 4.035 22 C -0.116 4.116 23 C -0.105 4.105 24 C -0.144 4.144 25 C -0.110 4.110 26 C -0.100 4.100 27 H 0.028 0.972 28 H 0.076 0.924 29 H 0.054 0.946 30 H 0.057 0.943 31 H 0.027 0.973 32 H 0.043 0.957 33 H 0.080 0.920 34 H 0.242 0.758 35 H 0.065 0.935 36 H 0.069 0.931 37 H 0.058 0.942 38 H 0.064 0.936 39 H 0.136 0.864 40 H 0.155 0.845 41 H 0.161 0.839 42 H 0.167 0.833 43 H 0.157 0.843 44 H 0.125 0.875 45 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.387 7.661 2.215 14.733 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 O -0.314 6.314 3 C -0.028 4.028 4 C 0.013 3.987 5 N -0.304 5.304 6 C -0.345 4.345 7 H 0.052 0.948 8 C -0.215 4.215 9 N -0.559 5.559 10 Si 0.754 3.246 11 H -0.221 1.221 12 H -0.222 1.222 13 H -0.194 1.194 14 C 0.016 3.984 15 C -0.024 4.024 16 O -0.217 6.217 17 C 0.078 3.922 18 C -0.258 4.258 19 C -0.090 4.090 20 C -0.175 4.175 21 C -0.035 4.035 22 C -0.133 4.133 23 C -0.122 4.122 24 C -0.162 4.162 25 C -0.128 4.128 26 C -0.101 4.101 27 H 0.046 0.954 28 H 0.095 0.905 29 H 0.073 0.927 30 H 0.075 0.925 31 H 0.045 0.955 32 H 0.061 0.939 33 H 0.098 0.902 34 H 0.051 0.949 35 H 0.083 0.917 36 H 0.087 0.913 37 H 0.077 0.923 38 H 0.082 0.918 39 H 0.154 0.846 40 H 0.173 0.827 41 H 0.178 0.822 42 H 0.184 0.816 43 H 0.175 0.825 44 H 0.143 0.857 45 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges 12.304 7.248 2.074 14.430 hybrid contribution -0.898 -0.808 -0.404 1.274 sum 11.407 6.440 1.670 13.205 Atomic orbital electron populations 1.22693 0.81763 1.02217 0.99505 1.88100 1.19460 1.28762 1.95097 1.23250 0.97089 0.84140 0.98295 1.21215 0.90608 0.97350 0.89505 1.43777 1.76047 1.02925 1.07617 1.18658 1.31670 0.84037 1.00156 0.94760 1.25356 0.97182 0.98957 0.99970 1.70039 1.33400 1.38954 1.13466 0.85985 0.79229 0.82968 0.76456 1.22062 1.22224 1.19432 1.20953 0.89519 0.94298 0.93596 1.23732 0.92247 0.86629 0.99807 1.86343 1.13037 1.36502 1.85776 1.19349 0.84120 0.94144 0.94569 1.21089 0.98291 0.94993 1.11459 1.20923 0.91268 1.00802 0.96054 1.21183 1.01245 0.90390 1.04638 1.18288 0.90508 0.96099 0.98595 1.21370 1.00386 0.91343 1.00213 1.21195 0.94481 0.98363 0.98200 1.21053 0.94403 0.98989 1.01779 1.21117 0.99771 0.93158 0.98756 1.17825 0.93231 0.92385 1.06635 0.95357 0.90519 0.92735 0.92522 0.95513 0.93872 0.90243 0.94855 0.91701 0.91348 0.92341 0.91778 0.84602 0.82700 0.82180 0.81590 0.82519 0.85682 0.88467 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 1.22 11.01 113.37 1.25 2.47 16 2 O -0.40 -17.85 10.32 -148.98 -1.54 -19.38 16 3 C 0.05 1.97 6.28 71.98 0.45 2.42 16 4 C 0.14 5.65 6.08 86.38 0.52 6.17 16 5 N -0.58 -28.49 2.37 -702.03 -1.66 -30.15 16 6 C -0.21 -12.08 8.61 84.03 0.72 -11.36 16 7 H 0.03 2.05 7.90 -2.91 -0.02 2.03 16 8 C -0.02 -1.06 4.99 84.86 0.42 -0.63 16 9 N -0.91 -54.55 11.42 21.65 0.25 -54.30 16 10 Si 0.92 47.72 28.97 68.60 1.99 49.71 16 11 H -0.29 -15.10 7.11 99.48 0.71 -14.39 16 12 H -0.30 -15.33 7.11 99.48 0.71 -14.63 16 13 H -0.27 -13.53 6.55 99.48 0.65 -12.88 16 14 C 0.14 6.45 5.73 86.38 0.49 6.94 16 15 C 0.05 2.04 5.08 71.98 0.37 2.40 16 16 O -0.30 -13.71 8.84 -91.40 -0.81 -14.52 16 17 C 0.13 4.89 6.67 22.57 0.15 5.04 16 18 C -0.24 -7.40 8.99 22.13 0.20 -7.20 16 19 C -0.07 -1.77 9.94 22.02 0.22 -1.55 16 20 C -0.16 -3.73 9.77 22.35 0.22 -3.51 16 21 C -0.03 -1.04 5.74 -21.30 -0.12 -1.16 16 22 C -0.12 -2.75 9.77 22.34 0.22 -2.53 16 23 C -0.10 -2.62 9.95 22.04 0.22 -2.40 16 24 C -0.14 -4.75 9.95 22.05 0.22 -4.53 16 25 C -0.11 -4.49 9.56 22.31 0.21 -4.27 16 26 C -0.10 -3.84 5.75 -21.23 -0.12 -3.96 16 27 H 0.03 0.98 8.14 -2.39 -0.02 0.96 16 28 H 0.08 2.57 8.14 -2.39 -0.02 2.55 16 29 H 0.05 1.53 8.14 -2.39 -0.02 1.51 16 30 H 0.06 1.76 8.14 -2.39 -0.02 1.74 16 31 H 0.03 1.07 8.14 -2.39 -0.02 1.05 16 32 H 0.04 1.83 8.01 -2.39 -0.02 1.81 16 33 H 0.08 2.65 8.10 -2.39 -0.02 2.63 16 34 H 0.24 14.29 8.31 -92.71 -0.77 13.52 16 35 H 0.06 2.60 8.07 -2.38 -0.02 2.58 16 36 H 0.07 3.70 5.51 -2.39 -0.01 3.68 16 37 H 0.06 2.04 7.66 -2.39 -0.02 2.02 16 38 H 0.06 2.13 7.65 -2.39 -0.02 2.11 16 39 H 0.14 3.73 6.21 -2.91 -0.02 3.71 16 40 H 0.16 2.55 8.06 -2.91 -0.02 2.53 16 41 H 0.16 2.50 8.06 -2.91 -0.02 2.48 16 42 H 0.17 2.50 8.06 -2.91 -0.02 2.48 16 43 H 0.16 2.66 8.06 -2.91 -0.02 2.64 16 44 H 0.13 3.78 8.06 -2.91 -0.02 3.75 16 45 H 0.10 4.70 6.39 -2.91 -0.02 4.68 16 Total: -1.00 -72.53 371.35 4.79 -67.74 By element: Atomic # 1 Polarization: 17.64 SS G_CDS: 0.91 Total: 18.56 kcal Atomic # 6 Polarization: -23.30 SS G_CDS: 5.65 Total: -17.65 kcal Atomic # 7 Polarization: -83.04 SS G_CDS: -1.41 Total: -84.45 kcal Atomic # 8 Polarization: -31.56 SS G_CDS: -2.35 Total: -33.91 kcal Atomic # 14 Polarization: 47.72 SS G_CDS: 1.99 Total: 49.71 kcal Total: -72.53 4.79 -67.74 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000459544650.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.752 kcal (2) G-P(sol) polarization free energy of solvation -72.531 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.779 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.786 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.744 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.992 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.08 seconds